Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47121 * 269.99520 * 3 2 1 5 5 H 1.48496 * 109.47177 * 30.00049 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99845 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99757 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00090 * 180.02562 * 7 2 1 10 10 C 1.53494 * 114.20706 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98739 * 139.85179 * 10 9 7 12 12 C 1.34772 * 136.05829 * 152.84012 * 11 10 9 13 13 O 1.21282 * 119.99983 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99949 * 179.97438 * 12 11 10 15 15 C 1.53008 * 119.53819 * 109.29579 * 14 12 11 16 16 C 1.53004 * 60.55243 * 111.76801 * 15 14 12 17 17 H 1.09006 * 119.53856 * 246.63231 * 16 15 14 18 18 C 1.54389 * 118.12410 * 91.54693 * 16 15 14 19 19 N 1.48145 * 104.61384 * 272.80682 * 18 16 15 20 20 C 1.34783 * 127.83513 * 219.58623 * 19 18 16 21 21 O 1.21549 * 119.99776 * 183.63709 * 20 19 18 22 22 C 1.47845 * 119.99687 * 3.63909 * 20 19 18 23 23 C 1.39571 * 120.14358 * 325.56760 * 22 20 19 24 24 C 1.37961 * 119.84803 * 180.28093 * 23 22 20 25 25 C 1.38355 * 120.14764 * 359.97438 * 24 23 22 26 26 C 1.38364 * 120.29487 * 0.02562 * 25 24 23 27 27 C 1.37963 * 120.13852 * 359.97438 * 26 25 24 28 28 C 1.48150 * 104.32750 * 39.84349 * 19 18 16 29 29 C 1.47075 * 87.88400 * 333.10040 * 11 10 9 30 30 H 0.96996 * 119.99602 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28208 * 46.93406 * 9 7 2 32 32 H 1.08994 * 113.46872 * 25.07256 * 10 9 7 33 33 H 1.09003 * 113.51890 * 254.63919 * 10 9 7 34 34 H 1.09001 * 117.43831 * 4.11688 * 15 14 12 35 35 H 1.08997 * 117.40323 * 219.43566 * 15 14 12 36 36 H 1.08995 * 110.41021 * 154.01601 * 18 16 15 37 37 H 1.08997 * 110.50621 * 31.63668 * 18 16 15 38 38 H 1.07998 * 120.07798 * 0.28853 * 23 22 20 39 39 H 1.08005 * 119.92418 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.85404 * 180.02562 * 25 24 23 41 41 H 1.07992 * 119.92783 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.06669 * 180.02562 * 27 26 25 43 43 H 1.08998 * 110.40420 * 78.93661 * 28 19 18 44 44 H 1.09004 * 110.40454 * 201.37487 * 28 19 18 45 45 H 1.09004 * 113.46424 * 141.67830 * 29 11 10 46 46 H 1.09002 * 113.46454 * 272.12135 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1447 -2.0862 -0.9461 12 6 6.4194 -2.3876 -1.2635 13 8 6.9904 -3.2900 -0.6885 14 6 7.1349 -1.6041 -2.3337 15 6 8.2609 -0.6453 -1.9412 16 6 8.5934 -1.9132 -2.7304 17 1 9.1849 -2.6991 -2.2604 18 6 8.6143 -1.8267 -4.2717 19 7 7.2124 -2.0786 -4.6792 20 6 6.7738 -2.8001 -5.7297 21 8 5.5841 -2.8601 -5.9715 22 6 7.7398 -3.5186 -6.5879 23 6 9.0009 -2.9730 -6.8326 24 6 9.8954 -3.6459 -7.6391 25 6 9.5449 -4.8591 -8.2043 26 6 8.2964 -5.4055 -7.9657 27 6 7.3925 -4.7429 -7.1611 28 6 6.4022 -1.3523 -3.6738 29 6 4.1477 -1.1003 -1.3899 30 1 -0.4849 0.8400 -0.0004 31 1 3.9421 -0.5103 0.7326 32 1 3.4930 -3.3612 -0.4230 33 1 4.5603 -2.8826 0.9649 34 1 8.5525 -0.6160 -0.8914 35 1 8.3176 0.3056 -2.4711 36 1 9.2736 -2.5891 -4.6863 37 1 8.9314 -0.8349 -4.5942 38 1 9.2759 -2.0263 -6.3916 39 1 10.8718 -3.2250 -7.8290 40 1 10.2491 -5.3820 -8.8345 41 1 8.0291 -6.3531 -8.4096 42 1 6.4184 -5.1707 -6.9754 43 1 6.3785 -0.2869 -3.9026 44 1 5.3906 -1.7567 -3.6369 45 1 4.5728 -0.1202 -1.6060 46 1 3.5016 -1.4656 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270313935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = 49.102042 kcal Electronic energy + Delta-G solvation = -29193.595868 eV Core-core repulsion = 25244.238659 eV Total energy + Delta-G solvation = -3949.357209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15271 -39.91741 -38.95212 -38.07141 -36.95111 -33.95218 -32.67012 -31.59010 -31.33204 -30.10142 -28.58290 -26.78860 -25.65699 -25.15345 -23.61035 -22.96792 -22.46924 -21.23978 -20.06461 -19.69675 -18.43921 -17.48460 -17.19707 -16.97036 -16.45079 -16.12721 -15.97472 -15.50473 -15.07806 -14.83980 -14.79708 -14.27760 -13.97745 -13.84696 -13.68405 -13.50813 -13.34290 -12.95061 -12.85383 -12.59434 -12.51435 -12.06111 -12.00852 -11.88942 -11.76925 -11.70381 -11.39595 -10.96309 -10.79066 -10.72142 -10.43617 -10.02350 -9.97812 -9.81238 -9.43637 -9.35266 -9.31270 -9.21414 -8.94982 -8.68927 -8.10952 -6.21324 -4.24579 0.59572 0.98740 2.48545 2.63498 2.70509 3.19392 3.23936 3.28650 3.29835 3.40946 3.46829 4.13723 4.19946 4.29337 4.36310 4.45516 4.55496 4.60775 4.66120 4.71178 4.86484 5.00489 5.00875 5.08758 5.11604 5.18600 5.39672 5.42395 5.47265 5.60211 5.62761 5.67889 5.73128 5.81361 5.88587 5.92292 5.94973 6.05284 6.07939 6.09000 6.21092 6.29394 6.36562 6.50484 6.51138 7.14827 7.25284 7.53142 7.90753 8.25351 8.35890 8.54556 8.82176 9.38768 10.90664 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.002817 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.492873 B = 9938.603139 C =10440.997256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.080 0.920 9 C -0.011 4.011 10 C 0.115 3.885 11 N -0.637 5.637 12 C 0.579 3.421 13 O -0.557 6.557 14 C -0.175 4.175 15 C -0.108 4.108 16 C -0.144 4.144 17 H 0.132 0.868 18 C 0.118 3.882 19 N -0.617 5.617 20 C 0.579 3.421 21 O -0.526 6.526 22 C -0.123 4.123 23 C -0.095 4.095 24 C -0.127 4.127 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.064 4.064 28 C 0.144 3.856 29 C 0.084 3.916 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.784 -2.769 -14.294 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.098 0.902 9 C -0.030 4.030 10 C -0.006 4.006 11 N -0.369 5.369 12 C 0.367 3.633 13 O -0.437 6.437 14 C -0.180 4.180 15 C -0.146 4.146 16 C -0.164 4.164 17 H 0.150 0.850 18 C -0.004 4.004 19 N -0.351 5.351 20 C 0.368 3.632 21 O -0.402 6.402 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.083 4.083 28 C 0.022 3.978 29 C -0.039 4.039 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.395 -3.288 -14.291 26.769 hybrid contribution 0.336 0.895 -0.056 0.958 sum 22.731 -2.392 -14.347 26.987 Atomic orbital electron populations 1.69890 1.06338 1.27320 1.49229 1.25007 0.94681 0.99122 0.93815 0.86882 0.80526 0.83672 0.78880 1.19881 1.21187 1.18678 1.20754 0.87377 0.94939 1.51801 0.90153 1.20853 0.97048 0.92917 0.92206 1.23151 0.86265 0.99594 0.91626 1.49805 1.09638 1.36929 1.40547 1.18462 0.80469 0.82477 0.81847 1.90657 1.66585 1.31858 1.54565 1.22733 0.91391 1.06710 0.97143 1.23117 0.96289 0.93611 1.01573 1.23747 0.96715 1.01806 0.94101 0.84972 1.22257 0.83674 1.02086 0.92406 1.49111 1.08045 1.50724 1.27211 1.17978 0.87985 0.77827 0.79365 1.90840 1.16551 1.62321 1.70533 1.19846 0.94726 0.97053 1.00998 1.21549 0.92199 1.00101 0.97516 1.21123 0.99806 0.95644 0.97913 1.21377 0.96463 0.95477 0.98422 1.21171 0.93862 1.00428 0.98815 1.21269 0.99736 0.93051 0.94195 1.21799 0.96052 0.96809 0.83142 1.23867 0.87077 0.90507 1.02412 0.92326 0.91532 0.90084 0.91925 0.87035 0.87608 0.88628 0.89918 0.84936 0.85321 0.85555 0.85200 0.84877 0.89615 0.88537 0.92553 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 19.83 27.42 -169.99 -4.66 15.17 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.65 6.22 56.52 0.35 -5.30 16 7 C -0.51 -13.25 9.39 -34.44 -0.32 -13.58 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C -0.01 -0.23 2.98 -91.39 -0.27 -0.50 16 10 C 0.12 2.33 8.18 -8.50 -0.07 2.26 16 11 N -0.64 -12.36 3.64 -185.37 -0.67 -13.04 16 12 C 0.58 10.85 7.70 -10.99 -0.08 10.77 16 13 O -0.56 -12.01 17.59 5.56 0.10 -11.92 16 14 C -0.18 -2.48 2.70 -154.04 -0.42 -2.90 16 15 C -0.11 -1.12 9.86 -26.72 -0.26 -1.38 16 16 C -0.14 -1.57 6.78 -89.22 -0.60 -2.17 16 17 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 18 C 0.12 1.07 5.09 -2.41 -0.01 1.05 16 19 N -0.62 -7.94 3.31 -170.16 -0.56 -8.50 16 20 C 0.58 8.46 7.61 -12.33 -0.09 8.36 16 21 O -0.53 -9.78 17.10 5.32 0.09 -9.68 16 22 C -0.12 -1.42 5.62 -104.97 -0.59 -2.01 16 23 C -0.10 -0.81 7.82 -39.19 -0.31 -1.12 16 24 C -0.13 -0.87 10.03 -39.64 -0.40 -1.27 16 25 C -0.10 -0.68 10.04 -39.49 -0.40 -1.08 16 26 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 27 C -0.06 -0.69 9.61 -39.18 -0.38 -1.06 16 28 C 0.14 2.00 6.15 -2.19 -0.01 1.99 16 29 C 0.08 1.64 6.14 -8.63 -0.05 1.58 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.07 1.46 6.50 -51.93 -0.34 1.13 16 32 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.74 5.61 -51.93 -0.29 0.44 16 37 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.13 0.88 5.73 -52.49 -0.30 0.58 16 39 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.13 1.49 7.99 -52.49 -0.42 1.07 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.61 6.85 -51.93 -0.36 1.26 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -33.81 380.99 -10.34 -44.15 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.38 Total: 3.56 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.77 Total: -0.48 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.46 Total: -46.54 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.19 Total: -21.60 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.66 Total: 15.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.81 -10.34 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270313935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.252 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds