Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48500 * 109.47121 * 269.99520 * 3 2 1 5 5 H 1.48496 * 109.47177 * 30.00049 * 3 2 1 6 6 H 1.48504 * 109.47179 * 149.99845 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99757 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00090 * 180.02562 * 7 2 1 10 10 C 1.53494 * 114.20706 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98739 * 139.85179 * 10 9 7 12 12 C 1.34772 * 136.05829 * 152.84012 * 11 10 9 13 13 O 1.21282 * 119.99983 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99949 * 179.97438 * 12 11 10 15 15 C 1.53008 * 119.53819 * 109.29579 * 14 12 11 16 16 C 1.53004 * 60.55243 * 111.76801 * 15 14 12 17 17 H 1.09006 * 119.53856 * 246.63231 * 16 15 14 18 18 C 1.54389 * 118.12410 * 91.54693 * 16 15 14 19 19 N 1.48145 * 104.61384 * 272.80682 * 18 16 15 20 20 C 1.34783 * 127.83513 * 219.58623 * 19 18 16 21 21 O 1.21549 * 119.99776 * 183.63709 * 20 19 18 22 22 C 1.47845 * 119.99687 * 3.63909 * 20 19 18 23 23 C 1.39571 * 120.14358 * 325.56760 * 22 20 19 24 24 C 1.37961 * 119.84803 * 180.28093 * 23 22 20 25 25 C 1.38355 * 120.14764 * 359.97438 * 24 23 22 26 26 C 1.38364 * 120.29487 * 0.02562 * 25 24 23 27 27 C 1.37963 * 120.13852 * 359.97438 * 26 25 24 28 28 C 1.48150 * 104.32750 * 39.84349 * 19 18 16 29 29 C 1.47075 * 87.88400 * 333.10040 * 11 10 9 30 30 H 0.96996 * 119.99602 * 0.02562 * 1 2 3 31 31 H 1.09001 * 113.28208 * 46.93406 * 9 7 2 32 32 H 1.08994 * 113.46872 * 25.07256 * 10 9 7 33 33 H 1.09003 * 113.51890 * 254.63919 * 10 9 7 34 34 H 1.09001 * 117.43831 * 4.11688 * 15 14 12 35 35 H 1.08997 * 117.40323 * 219.43566 * 15 14 12 36 36 H 1.08995 * 110.41021 * 154.01601 * 18 16 15 37 37 H 1.08997 * 110.50621 * 31.63668 * 18 16 15 38 38 H 1.07998 * 120.07798 * 0.28853 * 23 22 20 39 39 H 1.08005 * 119.92418 * 180.02562 * 24 23 22 40 40 H 1.08000 * 119.85404 * 180.02562 * 25 24 23 41 41 H 1.07992 * 119.92783 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.06669 * 180.02562 * 27 26 25 43 43 H 1.08998 * 110.40420 * 78.93661 * 28 19 18 44 44 H 1.09004 * 110.40454 * 201.37487 * 28 19 18 45 45 H 1.09004 * 113.46424 * 141.67830 * 29 11 10 46 46 H 1.09002 * 113.46454 * 272.12135 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.1409 -2.5942 0.0010 11 7 5.1447 -2.0862 -0.9461 12 6 6.4194 -2.3876 -1.2635 13 8 6.9904 -3.2900 -0.6885 14 6 7.1349 -1.6041 -2.3337 15 6 8.2609 -0.6453 -1.9412 16 6 8.5934 -1.9132 -2.7304 17 1 9.1849 -2.6991 -2.2604 18 6 8.6143 -1.8267 -4.2717 19 7 7.2124 -2.0786 -4.6792 20 6 6.7738 -2.8001 -5.7297 21 8 5.5841 -2.8601 -5.9715 22 6 7.7398 -3.5186 -6.5879 23 6 9.0009 -2.9730 -6.8326 24 6 9.8954 -3.6459 -7.6391 25 6 9.5449 -4.8591 -8.2043 26 6 8.2964 -5.4055 -7.9657 27 6 7.3925 -4.7429 -7.1611 28 6 6.4022 -1.3523 -3.6738 29 6 4.1477 -1.1003 -1.3899 30 1 -0.4849 0.8400 -0.0004 31 1 3.9421 -0.5103 0.7326 32 1 3.4930 -3.3612 -0.4230 33 1 4.5603 -2.8826 0.9649 34 1 8.5525 -0.6160 -0.8914 35 1 8.3176 0.3056 -2.4711 36 1 9.2736 -2.5891 -4.6863 37 1 8.9314 -0.8349 -4.5942 38 1 9.2759 -2.0263 -6.3916 39 1 10.8718 -3.2250 -7.8290 40 1 10.2491 -5.3820 -8.8345 41 1 8.0291 -6.3531 -8.4096 42 1 6.4184 -5.1707 -6.9754 43 1 6.3785 -0.2869 -3.9026 44 1 5.3906 -1.7567 -3.6369 45 1 4.5728 -0.1202 -1.6060 46 1 3.5016 -1.4656 -2.1882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270313935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = 27.391768 kcal Electronic energy + Delta-G solvation = -29194.537296 eV Core-core repulsion = 25244.238659 eV Total energy + Delta-G solvation = -3950.298637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.19639 -41.12253 -40.08468 -39.09145 -38.42620 -34.94920 -34.70012 -32.31061 -31.96160 -31.67509 -29.69036 -27.68728 -27.38558 -26.82945 -24.44903 -23.83434 -23.45678 -22.20797 -21.26902 -20.92439 -19.76734 -19.15442 -18.52922 -17.90180 -17.69182 -17.03353 -16.91901 -16.85058 -16.61012 -15.98225 -15.57770 -15.51869 -15.18364 -15.03130 -14.76200 -14.66106 -14.44127 -14.34616 -13.94181 -13.68250 -13.58910 -13.52216 -13.31624 -13.06118 -12.74599 -12.73714 -12.63827 -12.49745 -12.02506 -11.85188 -11.75775 -11.53130 -11.36698 -11.29564 -11.00107 -10.83169 -10.66721 -10.11120 -9.95021 -9.85169 -9.73850 -8.28902 -6.38182 -0.11009 0.37934 1.32689 1.41410 1.43868 1.53308 1.53729 1.71499 1.88586 2.37175 2.37995 2.79198 3.00332 3.23812 3.28529 3.36978 3.50979 3.73345 3.90361 3.94109 3.96200 4.00927 4.20996 4.22661 4.28224 4.35027 4.44961 4.45656 4.50556 4.51055 4.54414 4.58366 4.69174 4.70787 4.72787 4.77344 4.85173 4.91270 4.97645 5.03198 5.11082 5.33577 5.33947 5.41064 5.49017 5.57015 5.93292 6.25608 6.29685 6.67387 6.75743 6.87845 7.01704 7.29307 8.86798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.002817 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.492873 B = 9938.603139 C =10440.997256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.257 1.257 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.516 4.516 8 H 0.036 0.964 9 C -0.012 4.012 10 C 0.112 3.888 11 N -0.638 5.638 12 C 0.573 3.427 13 O -0.592 6.592 14 C -0.210 4.210 15 C -0.076 4.076 16 C -0.130 4.130 17 H 0.126 0.874 18 C 0.119 3.881 19 N -0.618 5.618 20 C 0.570 3.430 21 O -0.587 6.587 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.120 4.120 25 C -0.092 4.092 26 C -0.129 4.129 27 C -0.092 4.092 28 C 0.145 3.855 29 C 0.100 3.900 30 H 0.268 0.732 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.147 0.853 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.311 -0.316 -15.945 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.181 1.181 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.554 4.554 8 H 0.055 0.945 9 C -0.031 4.031 10 C -0.010 4.010 11 N -0.371 5.371 12 C 0.364 3.636 13 O -0.475 6.475 14 C -0.214 4.214 15 C -0.113 4.113 16 C -0.149 4.149 17 H 0.144 0.856 18 C -0.001 4.001 19 N -0.350 5.350 20 C 0.362 3.638 21 O -0.468 6.468 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.138 4.138 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.111 4.111 28 C 0.023 3.977 29 C -0.023 4.023 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.165 0.835 42 H 0.127 0.873 43 H 0.132 0.868 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 27.987 -0.840 -15.933 32.216 hybrid contribution -1.363 -0.070 0.473 1.445 sum 26.624 -0.910 -15.461 30.801 Atomic orbital electron populations 1.70052 1.08518 1.28463 1.51308 1.25944 0.95429 1.03393 0.93288 0.85800 0.79874 0.78024 0.79909 1.18141 1.21546 1.15988 1.20907 0.89744 0.93428 1.51310 0.94544 1.20736 0.94272 0.94050 0.94060 1.23016 0.86839 0.98759 0.92399 1.49806 1.10037 1.36892 1.40323 1.19338 0.79809 0.82260 0.82177 1.90627 1.67135 1.33452 1.56249 1.22604 0.92740 1.10006 0.96062 1.23336 0.91423 0.94494 1.02035 1.23920 0.93287 1.02264 0.95441 0.85601 1.22610 0.81620 1.05015 0.90889 1.49227 1.09771 1.49806 1.26232 1.18614 0.87836 0.77508 0.79886 1.90791 1.19165 1.64429 1.72425 1.19780 0.95764 0.97570 1.02131 1.21797 0.90793 1.00857 0.97533 1.21584 1.00762 0.95158 0.96283 1.21830 0.95996 0.95495 0.97712 1.21412 0.94134 1.00995 0.98099 1.21291 0.99778 0.93955 0.96106 1.21762 0.94328 0.98077 0.83579 1.23535 0.86782 0.91823 1.00122 0.92261 0.90547 0.91322 0.91307 0.87027 0.83762 0.87026 0.85660 0.82669 0.81654 0.82295 0.83513 0.87303 0.86781 0.92584 0.89638 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 2 C 0.02 0.99 5.47 84.66 0.46 1.45 16 3 Si 0.94 40.28 27.42 68.60 1.88 42.16 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -9.09 6.22 99.48 0.62 -8.47 16 7 C -0.52 -27.94 9.39 25.60 0.24 -27.70 16 8 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 9 C -0.01 -0.52 2.98 -11.29 -0.03 -0.55 16 10 C 0.11 4.71 8.18 83.18 0.68 5.39 16 11 N -0.64 -24.96 3.64 -858.77 -3.13 -28.09 16 12 C 0.57 21.31 7.70 87.66 0.67 21.99 16 13 O -0.59 -25.75 17.59 -3.04 -0.05 -25.80 16 14 C -0.21 -5.48 2.70 -51.88 -0.14 -5.62 16 15 C -0.08 -1.20 9.86 30.60 0.30 -0.90 16 16 C -0.13 -2.36 6.78 -9.89 -0.07 -2.43 16 17 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 18 C 0.12 1.65 5.09 86.53 0.44 2.09 16 19 N -0.62 -15.06 3.31 -810.55 -2.68 -17.75 16 20 C 0.57 17.08 7.61 86.79 0.66 17.74 16 21 O -0.59 -23.55 17.10 -3.87 -0.07 -23.62 16 22 C -0.15 -3.40 5.62 -20.09 -0.11 -3.51 16 23 C -0.09 -1.25 7.82 22.53 0.18 -1.08 16 24 C -0.12 -1.10 10.03 22.23 0.22 -0.88 16 25 C -0.09 -0.92 10.04 22.33 0.22 -0.70 16 26 C -0.13 -1.92 10.03 22.23 0.22 -1.69 16 27 C -0.09 -2.07 9.61 22.53 0.22 -1.85 16 28 C 0.15 3.84 6.15 86.67 0.53 4.38 16 29 C 0.10 3.87 6.14 83.09 0.51 4.38 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.08 3.23 6.50 -2.39 -0.02 3.22 16 32 H 0.07 3.00 8.10 -2.39 -0.02 2.98 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.23 5.61 -2.39 -0.01 1.22 16 37 H 0.13 0.79 8.07 -2.39 -0.02 0.77 16 38 H 0.16 1.30 5.73 -2.91 -0.02 1.28 16 39 H 0.17 0.35 8.06 -2.91 -0.02 0.32 16 40 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.11 2.81 7.99 -2.91 -0.02 2.79 16 43 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.06 1.93 6.85 -2.39 -0.02 1.92 16 45 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 46 H 0.07 3.01 8.10 -2.39 -0.02 2.99 16 Total: -1.00 -81.93 380.99 2.37 -79.55 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.91 Total: 19.58 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.21 Total: 10.51 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -5.51 Total: -102.39 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.12 Total: -49.42 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.16 kcal Total: -81.93 2.37 -79.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270313935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.946 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds