Wall clock time and date at job start Sat Apr 11 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00097 * 2 1 4 4 H 1.48500 * 109.47034 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.46772 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47409 * 119.99310 * 3 2 1 7 7 C 1.37879 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53943 * 113.84263 * 81.35060 * 9 7 2 11 11 N 1.47584 * 86.11852 * 137.96418 * 10 9 7 12 12 C 1.34768 * 134.49124 * 155.36623 * 11 10 9 13 13 O 1.21285 * 120.00073 * 174.47269 * 12 11 10 14 14 C 1.50704 * 119.99937 * 354.46205 * 12 11 10 15 15 C 1.52872 * 118.99629 * 157.70549 * 14 12 11 16 16 C 1.53997 * 120.83192 * 86.20837 * 14 12 11 17 17 H 1.09007 * 122.23971 * 359.08909 * 16 14 12 18 18 C 1.54701 * 105.06723 * 221.78692 * 16 14 12 19 19 C 1.54955 * 102.70092 * 337.54461 * 18 16 14 20 20 N 1.47378 * 117.18568 * 312.50311 * 14 12 11 21 21 C 1.34774 * 126.94239 * 344.29206 * 20 14 12 22 22 O 1.21553 * 120.00466 * 5.38933 * 21 20 14 23 23 C 1.47854 * 119.99915 * 185.38387 * 21 20 14 24 24 C 1.39574 * 120.14217 * 19.26913 * 23 21 20 25 25 C 1.37958 * 119.84953 * 179.74140 * 24 23 21 26 26 C 1.38355 * 120.14367 * 0.53503 * 25 24 23 27 27 C 1.38352 * 120.29661 * 359.74000 * 26 25 24 28 28 C 1.37962 * 120.14480 * 359.97438 * 27 26 25 29 29 C 1.47582 * 91.01522 * 335.36080 * 11 10 9 30 30 H 0.96993 * 119.99981 * 0.02562 * 1 2 3 31 31 H 1.09002 * 112.94487 * 309.66032 * 9 7 2 32 32 H 1.08995 * 113.77215 * 252.27114 * 10 9 7 33 33 H 1.09007 * 113.76439 * 23.66322 * 10 9 7 34 34 H 1.09006 * 117.45449 * 356.77191 * 15 14 12 35 35 H 1.08998 * 117.45618 * 141.54176 * 15 14 12 36 36 H 1.09006 * 110.77153 * 219.24557 * 18 16 14 37 37 H 1.09001 * 110.76865 * 95.84588 * 18 16 14 38 38 H 1.09000 * 110.66438 * 279.11251 * 19 18 16 39 39 H 1.08996 * 110.80677 * 156.05698 * 19 18 16 40 40 H 1.08001 * 120.07141 * 0.02562 * 24 23 21 41 41 H 1.08001 * 119.92305 * 180.27020 * 25 24 23 42 42 H 1.08007 * 119.84779 * 179.76471 * 26 25 24 43 43 H 1.07998 * 119.93312 * 180.02562 * 27 26 25 44 44 H 1.07997 * 120.07599 * 180.02562 * 28 27 26 45 45 H 1.08997 * 113.77155 * 270.34125 * 29 11 10 46 46 H 1.08996 * 113.87040 * 138.95152 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7571 -2.9325 -1.3916 11 7 1.1907 -4.2912 -1.0120 12 6 0.8410 -5.5354 -1.3941 13 8 1.4514 -6.4939 -0.9702 14 6 -0.3085 -5.7356 -2.3478 15 6 -0.3795 -7.0275 -3.1620 16 6 -0.0902 -5.6747 -3.8710 17 1 0.8866 -5.4728 -4.3108 18 6 -1.2983 -4.8788 -4.4189 19 6 -2.3591 -5.0592 -3.3039 20 7 -1.5568 -5.0069 -2.0601 21 6 -1.8989 -4.4127 -0.8998 22 8 -1.1006 -4.3616 0.0154 23 6 -3.2453 -3.8230 -0.7401 24 6 -4.2846 -4.2091 -1.5879 25 6 -5.5399 -3.6589 -1.4301 26 6 -5.7668 -2.7182 -0.4412 27 6 -4.7395 -2.3269 0.3989 28 6 -3.4810 -2.8737 0.2556 29 6 2.1610 -3.7401 -0.0461 30 1 -0.4850 0.8400 -0.0004 31 1 0.4835 -2.5466 0.7730 32 1 -0.3203 -2.8363 -1.5251 33 1 1.3289 -2.5025 -2.2141 34 1 0.4435 -7.7344 -3.0558 35 1 -1.3630 -7.4718 -3.3150 36 1 -1.6488 -5.3062 -5.3584 37 1 -1.0435 -3.8263 -4.5432 38 1 -2.8576 -6.0237 -3.3997 39 1 -3.0865 -4.2477 -3.3266 40 1 -4.1077 -4.9403 -2.3628 41 1 -6.3460 -3.9600 -2.0826 42 1 -6.7505 -2.2878 -0.3243 43 1 -4.9233 -1.5925 1.1691 44 1 -2.6800 -2.5677 0.9122 45 1 3.1451 -3.5474 -0.4733 46 1 2.2058 -4.2877 0.8952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270314438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:53 Heat of formation + Delta-G solvation = 44.911309 kcal Electronic energy + Delta-G solvation = -31019.336840 eV Core-core repulsion = 27069.797907 eV Total energy + Delta-G solvation = -3949.538933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.32780 -40.60009 -39.96039 -38.88861 -38.29024 -34.63295 -34.42109 -31.90481 -31.78584 -31.54777 -30.59780 -27.32623 -26.91827 -25.93355 -25.16298 -23.61633 -23.43177 -22.23296 -21.32054 -21.02494 -19.38695 -18.87382 -18.39220 -17.82503 -17.47808 -17.17413 -16.65800 -16.45537 -16.29867 -16.13859 -15.45416 -15.33002 -15.17718 -14.81395 -14.67485 -14.44682 -14.18095 -13.97695 -13.77267 -13.70213 -13.48449 -13.23840 -13.12809 -12.97054 -12.73446 -12.64004 -12.58640 -12.25840 -12.19637 -11.79591 -11.68186 -11.61636 -11.24729 -11.15721 -10.90283 -10.67118 -10.49605 -9.93302 -9.89512 -9.54718 -9.45022 -8.14556 -6.28300 -0.07643 0.44100 1.23186 1.43566 1.45484 1.52966 1.77286 1.95219 1.97047 2.43153 2.61325 2.91480 3.13564 3.29222 3.34945 3.51772 3.68420 3.80024 3.96315 4.04458 4.09090 4.23971 4.25558 4.35161 4.42376 4.46831 4.49449 4.54578 4.56851 4.58428 4.62451 4.71546 4.77503 4.86879 4.95607 4.98261 5.02794 5.08049 5.08882 5.16306 5.24530 5.40086 5.50021 5.54471 5.59220 5.83409 5.99713 6.23742 6.42265 6.77902 6.90395 7.10290 7.17561 7.40435 8.94024 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008580 B = 0.005598 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3262.451092 B = 5000.564736 C = 7168.520002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.042 3.958 10 C 0.140 3.860 11 N -0.608 5.608 12 C 0.562 3.438 13 O -0.604 6.604 14 C 0.021 3.979 15 C -0.099 4.099 16 C -0.134 4.134 17 H 0.123 0.877 18 C -0.095 4.095 19 C 0.074 3.926 20 N -0.582 5.582 21 C 0.555 3.445 22 O -0.553 6.553 23 C -0.146 4.146 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.089 4.089 27 C -0.134 4.134 28 C -0.081 4.081 29 C 0.105 3.895 30 H 0.263 0.737 31 H 0.025 0.975 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.613 -7.850 -13.460 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.023 3.977 10 C 0.018 3.982 11 N -0.338 5.338 12 C 0.352 3.648 13 O -0.488 6.488 14 C -0.069 4.069 15 C -0.137 4.137 16 C -0.154 4.154 17 H 0.141 0.859 18 C -0.133 4.133 19 C -0.046 4.046 20 N -0.316 5.316 21 C 0.346 3.654 22 O -0.431 6.431 23 C -0.149 4.149 24 C -0.118 4.118 25 C -0.138 4.138 26 C -0.107 4.107 27 C -0.152 4.152 28 C -0.101 4.101 29 C -0.018 4.018 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.179 0.821 43 H 0.154 0.846 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.123 -8.294 -12.688 21.413 hybrid contribution 1.172 1.075 1.096 1.932 sum -13.951 -7.219 -11.592 19.523 Atomic orbital electron populations 1.70114 1.07316 1.27576 1.49693 1.25779 0.95647 1.02404 0.93942 0.85591 0.78359 0.78579 0.78967 1.19145 1.20810 1.19886 1.21257 0.93155 0.90834 1.52505 0.91905 1.20177 0.93315 0.91283 0.92923 1.23136 0.98174 0.77011 0.99893 1.49912 1.38753 1.04875 1.40250 1.19386 0.83719 0.81119 0.80532 1.90567 1.57882 1.41033 1.59315 1.21579 0.85935 1.04112 0.95236 1.23818 1.05773 0.89008 0.95147 1.24409 1.02388 0.99139 0.89478 0.85893 1.22443 0.91574 1.00026 0.99211 1.23542 0.95154 1.05039 0.80818 1.48099 1.17931 1.52818 1.12724 1.18663 0.87787 0.77752 0.81212 1.90912 1.52363 1.58307 1.41481 1.19787 0.92949 1.01568 1.00626 1.22193 0.92245 0.99835 0.97491 1.21600 0.96892 0.96580 0.98772 1.21794 0.99601 0.95762 0.93544 1.21334 0.92101 1.00606 1.01189 1.21226 0.97856 0.94801 0.96182 1.23359 0.94047 0.93445 0.90931 0.92822 0.95701 0.93193 0.91613 0.87221 0.84263 0.84651 0.90622 0.86594 0.86833 0.81444 0.81034 0.82093 0.84622 0.89141 0.89827 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.58 13.29 21.45 0.28 -52.30 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -30.23 8.78 25.60 0.22 -30.01 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 9 C 0.04 2.33 3.22 -10.88 -0.04 2.30 16 10 C 0.14 6.97 7.06 86.48 0.61 7.58 16 11 N -0.61 -29.69 2.41 -836.75 -2.02 -31.71 16 12 C 0.56 26.02 6.47 87.66 0.57 26.59 16 13 O -0.60 -31.30 17.39 -3.05 -0.05 -31.35 16 14 C 0.02 0.70 2.98 2.99 0.01 0.70 16 15 C -0.10 -2.28 9.55 31.40 0.30 -1.98 16 16 C -0.13 -3.06 7.15 -9.03 -0.06 -3.12 16 17 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 18 C -0.10 -1.48 7.02 31.84 0.22 -1.26 16 19 C 0.07 1.28 4.63 86.74 0.40 1.68 16 20 N -0.58 -18.22 2.97 -770.80 -2.29 -20.51 16 21 C 0.55 22.09 5.78 86.79 0.50 22.59 16 22 O -0.55 -28.35 11.88 -3.88 -0.05 -28.40 16 23 C -0.15 -4.84 5.78 -20.09 -0.12 -4.96 16 24 C -0.10 -2.11 8.00 22.53 0.18 -1.93 16 25 C -0.12 -1.93 10.03 22.23 0.22 -1.71 16 26 C -0.09 -1.64 10.04 22.32 0.22 -1.42 16 27 C -0.13 -3.59 10.03 22.23 0.22 -3.37 16 28 C -0.08 -2.94 9.59 22.53 0.22 -2.73 16 29 C 0.10 5.29 8.39 86.48 0.73 6.02 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.02 1.59 7.54 -2.39 -0.02 1.57 16 32 H 0.05 2.55 5.56 -2.39 -0.01 2.54 16 33 H 0.07 3.18 8.09 -2.38 -0.02 3.16 16 34 H 0.11 2.75 7.98 -2.38 -0.02 2.74 16 35 H 0.14 2.14 7.16 -2.39 -0.02 2.13 16 36 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.12 1.16 7.01 -2.39 -0.02 1.14 16 39 H 0.11 1.71 5.46 -2.39 -0.01 1.69 16 40 H 0.17 2.39 4.49 -2.91 -0.01 2.38 16 41 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.09 4.09 7.78 -2.91 -0.02 4.07 16 45 H 0.08 3.92 8.09 -2.39 -0.02 3.90 16 46 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -84.08 370.76 3.79 -80.29 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.01 Total: 22.18 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 4.88 Total: 16.71 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.02 Total: -104.51 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.10 Total: -59.75 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -84.08 3.79 -80.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270314438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.200 kcal (2) G-P(sol) polarization free energy of solvation -84.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds