Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48505 * 109.46972 * 269.99682 * 3 2 1 5 5 H 1.48496 * 109.47365 * 29.99971 * 3 2 1 6 6 H 1.48495 * 109.47015 * 150.00113 * 3 2 1 7 7 C 1.38797 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.47167 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00344 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00458 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.79846 * 300.00426 * 19 17 16 21 21 C 1.54932 * 109.80105 * 60.81665 * 19 17 16 22 22 C 1.52724 * 108.56654 * 176.50281 * 21 19 17 23 23 C 1.50805 * 108.91074 * 57.90585 * 22 21 19 24 24 C 1.31660 * 118.08888 * 255.11523 * 23 22 21 25 25 C 1.50519 * 116.92440 * 359.71751 * 24 23 22 26 26 C 1.49511 * 113.04272 * 84.57241 * 25 24 23 27 27 C 1.51382 * 117.51608 * 280.28323 * 26 25 24 28 28 H 0.96993 * 120.00179 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 30 30 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 31 31 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 33 33 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 34 34 H 1.09004 * 109.47116 * 299.99365 * 15 14 13 35 35 H 1.08993 * 109.47352 * 59.99609 * 15 14 13 36 36 H 0.97004 * 120.00009 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.62185 * 296.28769 * 21 19 17 38 38 H 1.08999 * 109.62569 * 56.83666 * 21 19 17 39 39 H 1.09001 * 109.60997 * 298.06274 * 22 21 19 40 40 H 1.09005 * 109.55423 * 177.72038 * 22 21 19 41 41 H 1.08002 * 120.95152 * 75.13025 * 23 22 21 42 42 H 1.08002 * 121.53756 * 179.74434 * 24 23 22 43 43 H 1.08999 * 108.76482 * 323.65202 * 25 24 23 44 44 H 1.08997 * 108.76623 * 205.49223 * 25 24 23 45 45 H 1.08995 * 107.83097 * 158.24967 * 26 25 24 46 46 H 1.08999 * 107.79954 * 42.28962 * 26 25 24 47 47 H 1.09004 * 109.26818 * 313.53866 * 27 26 25 48 48 H 1.09004 * 109.23469 * 194.05761 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5733 -3.2323 0.0008 12 8 6.3442 -2.2960 0.0005 13 7 6.0459 -4.4944 0.0062 14 6 7.4910 -4.7354 0.0066 15 6 7.7567 -6.2421 0.0138 16 7 9.2017 -6.4831 0.0137 17 6 9.6745 -7.7453 0.0189 18 8 8.9036 -8.6815 0.0243 19 6 11.1609 -7.9932 0.0182 20 1 11.6083 -7.5522 -0.8726 21 6 11.7972 -7.3726 1.2872 22 6 13.2855 -7.7148 1.3020 23 6 13.9205 -7.1890 0.0392 24 6 14.2272 -8.0524 -0.9063 25 6 13.9183 -9.5001 -0.6337 26 6 12.5072 -9.8692 -0.9618 27 6 11.4370 -9.5065 0.0456 28 1 -0.4850 0.8400 -0.0004 29 1 3.6442 -3.4313 -0.8893 30 1 3.6435 -3.4316 0.8906 31 1 5.4294 -5.2432 0.0105 32 1 7.9335 -4.2923 -0.8856 33 1 7.9343 -4.2843 0.8944 34 1 7.3144 -6.6848 0.9063 35 1 7.3134 -6.6935 -0.8737 36 1 9.8184 -5.7343 0.0090 37 1 11.6697 -6.2902 1.2686 38 1 11.3189 -7.7849 2.1756 39 1 13.4117 -8.7963 1.3508 40 1 13.7578 -7.2513 2.1682 41 1 14.1181 -6.1346 -0.0858 42 1 14.6800 -7.7364 -1.8346 43 1 14.0979 -9.7042 0.4219 44 1 14.5901 -10.1198 -1.2275 45 1 12.4710 -10.9480 -1.1136 46 1 12.2498 -9.3936 -1.9082 47 1 11.7701 -9.7933 1.0431 48 1 10.5198 -10.0438 -0.1956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282917750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = -71.760649 kcal Electronic energy + Delta-G solvation = -26093.167264 eV Core-core repulsion = 22274.013007 eV Total energy + Delta-G solvation = -3819.154257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70358 -39.41078 -38.71814 -36.07769 -34.20413 -33.68457 -33.34235 -32.45596 -30.47341 -28.53537 -27.45429 -26.21254 -25.62149 -23.23455 -22.42392 -21.94348 -20.69670 -20.19539 -18.49042 -18.08848 -17.69406 -16.73674 -16.46985 -16.15992 -16.02958 -15.66627 -15.44890 -15.11763 -14.96531 -14.60483 -14.45937 -14.19665 -13.87229 -13.79090 -13.48363 -13.34691 -12.96210 -12.81643 -12.55389 -12.43671 -12.13176 -11.95389 -11.81758 -11.74412 -11.35933 -11.28969 -11.26104 -11.02585 -10.88626 -10.64516 -10.47822 -10.15469 -9.87973 -9.62937 -9.50977 -9.37724 -9.13039 -9.01390 -8.53316 -6.94566 -6.30491 -4.02797 1.74990 2.28344 2.47272 2.87477 2.88575 3.31083 3.38320 3.48625 3.67035 4.09928 4.16041 4.27901 4.31419 4.40927 4.48251 4.55847 4.57385 4.71194 4.75198 4.84815 4.88279 4.97336 5.05692 5.08505 5.10872 5.16328 5.25097 5.28445 5.34379 5.46367 5.51902 5.55349 5.60609 5.63585 5.66827 5.73366 5.74060 5.85867 5.92635 5.98099 6.05709 6.22588 6.37623 6.41579 7.06983 7.48281 7.84638 7.92456 8.38377 8.40253 9.15484 10.78703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.001546 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.622095 B =18101.151422 C =18675.533385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.111 3.889 15 C 0.108 3.892 16 N -0.727 5.727 17 C 0.519 3.481 18 O -0.537 6.537 19 C -0.109 4.109 20 H 0.104 0.896 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.098 4.098 26 C -0.114 4.114 27 C -0.110 4.110 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.337 -20.383 0.430 35.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.017 4.017 16 N -0.379 5.379 17 C 0.305 3.695 18 O -0.414 6.414 19 C -0.130 4.130 20 H 0.121 0.879 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.176 4.176 24 C -0.178 4.178 25 C -0.135 4.135 26 C -0.151 4.151 27 C -0.148 4.148 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.875 -19.403 0.433 35.626 hybrid contribution -0.800 -0.145 -0.164 0.830 sum 29.075 -19.549 0.269 35.037 Atomic orbital electron populations 1.69936 1.05912 1.27788 1.47973 1.24712 0.94448 0.98957 0.93157 0.86734 0.81879 0.83295 0.79930 1.19205 1.19913 1.15946 1.22315 0.88212 0.97581 1.58893 0.89338 1.84779 1.09381 0.99910 1.97444 1.23278 0.93686 1.04521 1.06007 1.20298 0.90721 0.81997 0.75063 1.90705 1.58789 1.42132 1.47613 1.45765 1.06777 1.08448 1.78021 1.21329 0.82781 0.94120 1.03124 1.21453 0.81575 0.95290 1.03338 1.45815 1.07656 1.08343 1.76123 1.20696 0.91313 0.82253 0.75189 1.90691 1.59109 1.42369 1.49221 1.22012 0.91059 0.98931 1.01040 0.87850 1.21839 0.95129 1.00685 0.96404 1.21042 0.94472 1.02577 0.96401 1.23096 0.99489 0.99211 0.95830 1.23061 1.00677 0.95132 0.98954 1.20108 0.96650 0.94356 1.02393 1.20489 0.93654 1.01372 0.99629 1.21487 0.99899 0.93415 0.99996 0.91918 0.88334 0.88281 0.76298 0.90933 0.90915 0.90621 0.90656 0.76202 0.91283 0.90981 0.89539 0.91107 0.87052 0.86863 0.90744 0.91724 0.91973 0.92357 0.91366 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.62 27.74 -169.99 -4.72 16.90 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.04 7.85 -10.98 -0.09 8.96 16 12 O -0.52 -10.74 15.86 5.56 0.09 -10.65 16 13 N -0.73 -8.62 5.56 -60.29 -0.33 -8.95 16 14 C 0.11 1.07 5.79 -4.04 -0.02 1.05 16 15 C 0.11 0.88 5.79 -4.05 -0.02 0.86 16 16 N -0.73 -5.26 5.48 -60.30 -0.33 -5.59 16 17 C 0.52 4.60 7.18 -10.99 -0.08 4.52 16 18 O -0.54 -6.83 15.22 5.56 0.08 -6.75 16 19 C -0.11 -0.67 2.22 -90.31 -0.20 -0.87 16 20 H 0.10 0.59 6.29 -51.93 -0.33 0.27 16 21 C -0.10 -0.50 4.81 -25.85 -0.12 -0.62 16 22 C -0.11 -0.48 5.42 -27.97 -0.15 -0.63 16 23 C -0.16 -0.74 8.55 -36.13 -0.31 -1.05 16 24 C -0.16 -0.77 9.28 -36.27 -0.34 -1.11 16 25 C -0.10 -0.45 5.13 -29.69 -0.15 -0.60 16 26 C -0.11 -0.61 4.90 -29.27 -0.14 -0.75 16 27 C -0.11 -0.71 4.96 -27.10 -0.13 -0.85 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.40 3.65 8.47 -40.82 -0.35 3.31 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.40 2.03 8.09 -40.82 -0.33 1.70 16 37 H 0.07 0.28 7.80 -51.93 -0.41 -0.12 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.38 3.56 -51.93 -0.18 0.20 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.47 8.06 -52.49 -0.42 0.04 16 42 H 0.11 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.07 0.33 5.63 -51.93 -0.29 0.03 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 47 H 0.07 0.40 6.57 -51.93 -0.34 0.06 16 48 H 0.09 0.78 6.46 -51.93 -0.34 0.44 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -35.45 391.33 -9.47 -44.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.61 Total: 0.54 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.33 Total: -5.15 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.11 Total: -40.18 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.17 Total: -17.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.90 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.45 -9.47 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282917750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds