Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48505 * 109.46972 * 269.99682 * 3 2 1 5 5 H 1.48496 * 109.47365 * 29.99971 * 3 2 1 6 6 H 1.48495 * 109.47015 * 150.00113 * 3 2 1 7 7 C 1.38797 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.47167 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00344 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00458 * 179.97438 * 17 16 15 20 20 H 1.08996 * 109.79846 * 300.00426 * 19 17 16 21 21 C 1.54932 * 109.80105 * 60.81665 * 19 17 16 22 22 C 1.52724 * 108.56654 * 176.50281 * 21 19 17 23 23 C 1.50805 * 108.91074 * 57.90585 * 22 21 19 24 24 C 1.31660 * 118.08888 * 255.11523 * 23 22 21 25 25 C 1.50519 * 116.92440 * 359.71751 * 24 23 22 26 26 C 1.49511 * 113.04272 * 84.57241 * 25 24 23 27 27 C 1.51382 * 117.51608 * 280.28323 * 26 25 24 28 28 H 0.96993 * 120.00179 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 30 30 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 31 31 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 33 33 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 34 34 H 1.09004 * 109.47116 * 299.99365 * 15 14 13 35 35 H 1.08993 * 109.47352 * 59.99609 * 15 14 13 36 36 H 0.97004 * 120.00009 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.62185 * 296.28769 * 21 19 17 38 38 H 1.08999 * 109.62569 * 56.83666 * 21 19 17 39 39 H 1.09001 * 109.60997 * 298.06274 * 22 21 19 40 40 H 1.09005 * 109.55423 * 177.72038 * 22 21 19 41 41 H 1.08002 * 120.95152 * 75.13025 * 23 22 21 42 42 H 1.08002 * 121.53756 * 179.74434 * 24 23 22 43 43 H 1.08999 * 108.76482 * 323.65202 * 25 24 23 44 44 H 1.08997 * 108.76623 * 205.49223 * 25 24 23 45 45 H 1.08995 * 107.83097 * 158.24967 * 26 25 24 46 46 H 1.08999 * 107.79954 * 42.28962 * 26 25 24 47 47 H 1.09004 * 109.26818 * 313.53866 * 27 26 25 48 48 H 1.09004 * 109.23469 * 194.05761 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9843 0.0009 11 6 5.5733 -3.2323 0.0008 12 8 6.3442 -2.2960 0.0005 13 7 6.0459 -4.4944 0.0062 14 6 7.4910 -4.7354 0.0066 15 6 7.7567 -6.2421 0.0138 16 7 9.2017 -6.4831 0.0137 17 6 9.6745 -7.7453 0.0189 18 8 8.9036 -8.6815 0.0243 19 6 11.1609 -7.9932 0.0182 20 1 11.6083 -7.5522 -0.8726 21 6 11.7972 -7.3726 1.2872 22 6 13.2855 -7.7148 1.3020 23 6 13.9205 -7.1890 0.0392 24 6 14.2272 -8.0524 -0.9063 25 6 13.9183 -9.5001 -0.6337 26 6 12.5072 -9.8692 -0.9618 27 6 11.4370 -9.5065 0.0456 28 1 -0.4850 0.8400 -0.0004 29 1 3.6442 -3.4313 -0.8893 30 1 3.6435 -3.4316 0.8906 31 1 5.4294 -5.2432 0.0105 32 1 7.9335 -4.2923 -0.8856 33 1 7.9343 -4.2843 0.8944 34 1 7.3144 -6.6848 0.9063 35 1 7.3134 -6.6935 -0.8737 36 1 9.8184 -5.7343 0.0090 37 1 11.6697 -6.2902 1.2686 38 1 11.3189 -7.7849 2.1756 39 1 13.4117 -8.7963 1.3508 40 1 13.7578 -7.2513 2.1682 41 1 14.1181 -6.1346 -0.0858 42 1 14.6800 -7.7364 -1.8346 43 1 14.0979 -9.7042 0.4219 44 1 14.5901 -10.1198 -1.2275 45 1 12.4710 -10.9480 -1.1136 46 1 12.2498 -9.3936 -1.9082 47 1 11.7701 -9.7933 1.0431 48 1 10.5198 -10.0438 -0.1956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282917750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -96.379096 kcal Electronic energy + Delta-G solvation = -26094.234800 eV Core-core repulsion = 22274.013007 eV Total energy + Delta-G solvation = -3820.221793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34397 -40.65956 -39.27141 -36.99952 -35.12620 -34.66871 -34.21116 -33.77371 -31.69567 -29.51597 -28.01301 -27.81140 -26.68822 -23.99874 -22.91180 -22.49855 -21.84830 -20.87904 -19.92267 -18.85128 -18.49940 -17.98133 -17.24408 -17.12482 -17.01554 -16.80276 -16.67946 -16.22344 -15.77758 -15.62976 -15.23137 -15.15221 -14.92958 -14.71759 -14.63059 -14.40493 -13.98660 -13.77579 -13.39351 -13.34257 -13.03176 -12.95339 -12.90562 -12.80889 -12.63345 -12.37815 -12.20283 -11.86614 -11.75761 -11.72045 -11.33023 -11.16854 -11.14109 -10.86518 -10.79673 -10.54106 -10.27479 -10.14803 -9.73735 -8.99373 -8.51220 -6.22291 0.97739 1.32058 1.40299 1.45429 1.52913 1.53279 1.59693 1.88293 2.25143 2.50908 2.74314 2.87093 3.56427 3.66612 3.70538 3.85328 3.89458 3.99568 4.08342 4.14602 4.20327 4.23929 4.36607 4.42725 4.48241 4.50614 4.54608 4.67188 4.75453 4.80496 4.84187 4.92553 4.96566 5.07859 5.09767 5.17765 5.24490 5.26704 5.34747 5.39129 5.43831 5.53778 5.70770 5.89023 6.07932 6.11793 6.37666 6.47780 6.93826 7.12975 7.19371 8.61147 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.001546 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.622095 B =18101.151422 C =18675.533385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.235 1.235 7 C -0.531 4.531 8 H 0.062 0.938 9 S -0.173 6.173 10 C -0.113 4.113 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.712 5.712 14 C 0.117 3.883 15 C 0.117 3.883 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.101 4.101 20 H 0.112 0.888 21 C -0.099 4.099 22 C -0.107 4.107 23 C -0.160 4.160 24 C -0.168 4.168 25 C -0.097 4.097 26 C -0.109 4.109 27 C -0.108 4.108 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.073 0.927 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.538 -20.503 0.586 37.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.679 4.679 8 H 0.080 0.920 9 S 0.053 5.947 10 C -0.264 4.264 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.366 5.366 14 C -0.008 4.008 15 C -0.007 4.007 16 N -0.370 5.370 17 C 0.305 3.695 18 O -0.459 6.459 19 C -0.122 4.122 20 H 0.129 0.871 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.178 4.178 24 C -0.186 4.186 25 C -0.133 4.133 26 C -0.147 4.147 27 C -0.146 4.146 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.092 0.908 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 32.090 -19.555 0.591 37.583 hybrid contribution -1.460 -0.293 -0.219 1.505 sum 30.630 -19.848 0.371 36.501 Atomic orbital electron populations 1.70018 1.07357 1.29033 1.49111 1.25579 0.95268 1.02310 0.92852 0.85856 0.80704 0.79517 0.80220 1.18691 1.18405 1.15919 1.22478 0.90359 0.96699 1.58324 0.92000 1.84667 1.06314 1.06091 1.97599 1.23279 0.95811 0.99702 1.07636 1.19881 0.89415 0.83085 0.75156 1.90697 1.59224 1.43689 1.50066 1.45513 1.08300 1.07149 1.75674 1.21392 0.80989 0.95004 1.03380 1.21286 0.82188 0.94002 1.03250 1.45733 1.07534 1.08475 1.75224 1.21151 0.92150 0.81978 0.74228 1.90679 1.60285 1.43680 1.51287 1.21996 0.89228 0.98860 1.02156 0.87053 1.21829 0.95272 1.01262 0.95281 1.21030 0.94017 1.02628 0.96663 1.23200 0.99279 0.99561 0.95742 1.23164 1.00936 0.95186 0.99293 1.20084 0.96002 0.94533 1.02729 1.20438 0.93868 1.01446 0.98909 1.21437 0.99128 0.93452 1.00595 0.91381 0.86755 0.86680 0.74448 0.90736 0.90618 0.90704 0.90855 0.74684 0.90077 0.91426 0.89636 0.90391 0.86429 0.86453 0.90410 0.91192 0.91823 0.92912 0.90847 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.63 13.97 21.65 0.30 -55.33 16 2 C 0.05 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.92 44.52 27.74 68.60 1.90 46.42 16 4 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.24 -11.37 6.74 99.48 0.67 -10.70 16 7 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 8 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 9 S -0.17 -8.57 18.55 -56.49 -1.05 -9.61 16 10 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 11 C 0.54 17.26 7.85 87.66 0.69 17.95 16 12 O -0.56 -22.37 15.86 -3.04 -0.05 -22.42 16 13 N -0.71 -14.93 5.56 -463.05 -2.57 -17.50 16 14 C 0.12 1.96 5.79 86.38 0.50 2.46 16 15 C 0.12 1.68 5.79 86.38 0.50 2.18 16 16 N -0.72 -9.01 5.48 -463.09 -2.54 -11.54 16 17 C 0.52 8.60 7.18 87.66 0.63 9.23 16 18 O -0.58 -14.61 15.22 -3.03 -0.05 -14.65 16 19 C -0.10 -1.12 2.22 -10.59 -0.02 -1.14 16 20 H 0.11 1.08 6.29 -2.39 -0.02 1.07 16 21 C -0.10 -0.77 4.81 31.16 0.15 -0.62 16 22 C -0.11 -0.73 5.42 29.79 0.16 -0.57 16 23 C -0.16 -1.16 8.55 25.06 0.21 -0.95 16 24 C -0.17 -1.32 9.28 24.97 0.23 -1.09 16 25 C -0.10 -0.75 5.13 28.68 0.15 -0.60 16 26 C -0.11 -1.07 4.90 28.95 0.14 -0.93 16 27 C -0.11 -1.34 4.96 30.35 0.15 -1.19 16 28 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 31 H 0.42 6.40 8.47 -92.71 -0.79 5.61 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.42 3.16 8.09 -92.71 -0.75 2.41 16 37 H 0.08 0.45 7.80 -2.39 -0.02 0.43 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.61 3.56 -2.39 -0.01 0.60 16 40 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.12 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.08 0.56 5.63 -2.39 -0.01 0.54 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.05 0.57 7.71 -2.39 -0.02 0.56 16 47 H 0.07 0.81 6.57 -2.39 -0.02 0.79 16 48 H 0.06 1.15 6.46 -2.38 -0.02 1.14 16 Total: -1.00 -76.91 391.33 0.44 -76.47 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.59 Total: 13.95 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 5.08 Total: -5.78 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -4.81 Total: -84.37 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.09 Total: -37.08 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.61 kcal Total: -76.91 0.44 -76.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282917750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.911 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds