Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47253 * 239.99974 * 3 2 1 5 5 H 1.48499 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47264 * 120.00362 * 3 2 1 7 7 C 1.38792 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00013 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47492 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99365 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00370 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00032 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46995 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47125 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47201 * 180.02562 * 16 15 14 18 18 C 1.34781 * 120.00110 * 179.97438 * 17 16 15 19 19 O 1.21615 * 119.99463 * 0.02562 * 18 17 16 20 20 C 1.47095 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.31567 * 119.84844 * 180.02562 * 20 18 17 22 22 C 1.51416 * 120.28807 * 179.97438 * 21 20 18 23 23 C 1.53036 * 108.57316 * 71.58654 * 22 21 20 24 24 C 1.51777 * 110.81062 * 274.28308 * 23 22 21 25 25 C 1.51786 * 113.84147 * 66.94238 * 24 23 22 26 26 C 1.51409 * 119.85773 * 359.97438 * 20 18 17 27 27 H 0.97005 * 120.00158 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47096 * 59.99645 * 10 9 7 29 29 H 1.09001 * 109.46958 * 300.00298 * 10 9 7 30 30 H 0.96996 * 120.00157 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46759 * 59.99822 * 14 13 11 32 32 H 1.09004 * 109.46982 * 300.00446 * 14 13 11 33 33 H 1.09000 * 109.46875 * 60.00358 * 15 14 13 34 34 H 1.08993 * 109.47413 * 300.00426 * 15 14 13 35 35 H 1.09004 * 109.46539 * 60.00050 * 16 15 14 36 36 H 1.09004 * 109.47072 * 300.00754 * 16 15 14 37 37 H 0.96998 * 119.99990 * 0.02562 * 17 16 15 38 38 H 1.07992 * 119.85439 * 0.25251 * 21 20 18 39 39 H 1.09002 * 109.61778 * 191.31330 * 22 21 20 40 40 H 1.08996 * 109.61877 * 311.67281 * 22 21 20 41 41 H 1.09004 * 109.21328 * 34.62887 * 23 22 21 42 42 H 1.09006 * 109.20656 * 153.98978 * 23 22 21 43 43 H 1.08991 * 108.61196 * 188.06916 * 24 23 22 44 44 H 1.08996 * 108.61254 * 305.96252 * 24 23 22 45 45 H 1.09002 * 109.20924 * 53.39961 * 25 24 23 46 46 H 1.08997 * 109.20960 * 172.76092 * 25 24 23 47 47 H 1.08994 * 109.61661 * 348.70313 * 26 20 18 48 48 H 1.09004 * 109.61952 * 228.15299 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0021 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0030 15 6 3.5023 -8.6986 -0.0042 16 6 2.9658 -10.1314 -0.0047 17 7 4.0880 -11.0731 -0.0052 18 6 3.8539 -12.4004 -0.0053 19 8 2.7111 -12.8163 -0.0054 20 6 4.9808 -13.3459 -0.0064 21 6 4.7490 -14.6410 -0.0069 22 6 5.9014 -15.6231 -0.0086 23 6 6.5709 -15.5913 1.3672 24 6 7.6076 -14.4849 1.4369 25 6 7.0191 -13.0875 1.3682 26 6 6.4023 -12.8244 -0.0080 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8894 29 1 3.1244 -3.7313 -0.8905 30 1 3.8008 -6.1836 -0.0022 31 1 1.7218 -7.8744 -0.8933 32 1 1.7214 -7.8758 0.8867 33 1 4.1110 -8.5393 0.8859 34 1 4.1108 -8.5376 -0.8940 35 1 2.3567 -10.2909 -0.8946 36 1 2.3575 -10.2920 0.8854 37 1 4.9995 -10.7413 -0.0048 38 1 3.7323 -15.0051 -0.0107 39 1 5.5267 -16.6266 -0.2103 40 1 6.6220 -15.3404 -0.7760 41 1 5.8125 -15.4209 2.1313 42 1 7.0570 -16.5494 1.5517 43 1 8.1598 -14.5841 2.3713 44 1 8.3040 -14.6079 0.6076 45 1 6.2485 -12.9849 2.1322 46 1 7.8068 -12.3571 1.5529 47 1 6.3989 -11.7533 -0.2093 48 1 6.9809 -13.3416 -0.7734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283185896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = -86.843503 kcal Electronic energy + Delta-G solvation = -25497.693562 eV Core-core repulsion = 21677.885263 eV Total energy + Delta-G solvation = -3819.808299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51712 -39.21343 -38.44934 -36.35435 -34.56024 -33.15389 -32.59815 -32.43233 -31.42257 -29.13853 -26.49791 -25.74324 -25.40413 -24.31657 -22.14423 -21.73349 -20.89357 -20.37316 -18.74344 -17.82889 -17.67120 -16.76386 -16.32133 -16.24032 -15.85552 -15.39382 -15.27905 -15.12428 -14.80744 -14.56050 -14.35697 -14.15488 -13.89457 -13.72862 -13.45714 -13.13828 -13.03967 -12.70892 -12.55190 -12.33692 -12.16242 -11.97471 -11.93310 -11.67320 -11.33249 -11.26099 -11.23251 -11.05106 -11.04194 -11.03274 -10.77563 -10.18861 -9.83124 -9.61868 -9.43143 -9.36251 -9.06924 -8.92328 -8.24513 -6.50610 -6.21777 -3.92730 1.00523 2.71429 2.93327 3.06612 3.08236 3.23058 3.27464 3.31258 3.70139 4.05239 4.19973 4.20212 4.27767 4.39372 4.45179 4.58291 4.59502 4.63505 4.69671 4.80038 4.92333 5.06156 5.13228 5.14746 5.16544 5.19891 5.21827 5.26190 5.31865 5.49644 5.54160 5.56242 5.58054 5.61457 5.62970 5.77199 5.80815 5.88699 5.89002 5.95038 6.06832 6.11016 6.12252 6.56761 7.12326 7.58620 7.67045 7.87190 8.34485 8.59162 9.23248 10.85589 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030443 B = 0.001371 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.539047 B =20425.328999 C =21165.545015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.124 3.876 15 C -0.142 4.142 16 C 0.121 3.879 17 N -0.726 5.726 18 C 0.552 3.448 19 O -0.543 6.543 20 C -0.183 4.183 21 C -0.066 4.066 22 C -0.098 4.098 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.080 4.080 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.455 -31.308 0.961 36.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.395 5.395 14 C 0.000 4.000 15 C -0.181 4.181 16 C -0.003 4.003 17 N -0.379 5.379 18 C 0.341 3.659 19 O -0.421 6.421 20 C -0.186 4.186 21 C -0.086 4.086 22 C -0.135 4.135 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.117 4.117 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.437 -31.799 0.969 35.809 hybrid contribution 2.834 1.588 -0.008 3.249 sum 19.272 -30.211 0.960 35.847 Atomic orbital electron populations 1.70009 1.05958 1.27584 1.46710 1.24987 0.95021 0.99011 0.94507 0.86224 0.79237 0.81251 0.78778 1.19950 1.20793 1.19947 1.22829 0.94872 0.91683 1.59148 0.90977 1.85421 1.04890 0.96300 1.96725 1.23529 1.06597 0.95357 1.04915 1.20322 0.86532 0.86293 0.75156 1.90714 1.15369 1.85597 1.47308 1.45962 1.09933 1.05398 1.78188 1.21102 0.95412 0.80556 1.02975 1.21974 0.98998 0.93587 1.03508 1.21254 0.88913 0.86855 1.03283 1.45952 1.10278 1.05943 1.75754 1.18425 0.89042 0.82389 0.76064 1.90812 1.22944 1.78404 1.49967 1.21179 0.94648 0.94478 1.08336 1.23381 1.00476 0.93698 0.91055 1.20982 0.95864 0.98435 0.98194 1.21263 0.98470 0.98909 0.96576 1.21142 0.98132 0.94239 1.02244 1.21326 1.00422 0.97016 0.96684 1.20782 0.91977 1.00692 0.98297 0.92109 0.89212 0.89215 0.76842 0.91221 0.91215 0.90490 0.90482 0.90811 0.90831 0.76341 0.85604 0.90623 0.90218 0.91592 0.91330 0.92005 0.92059 0.91650 0.91309 0.91416 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 12 O -0.52 -11.75 15.86 5.55 0.09 -11.66 16 13 N -0.74 -9.29 5.56 -60.29 -0.33 -9.63 16 14 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 15 C -0.14 -0.96 5.44 -26.73 -0.15 -1.11 16 16 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 17 N -0.73 -5.33 5.51 -61.49 -0.34 -5.67 16 18 C 0.55 5.40 7.75 -12.67 -0.10 5.30 16 19 O -0.54 -7.56 16.18 5.26 0.09 -7.48 16 20 C -0.18 -1.28 5.10 -102.54 -0.52 -1.80 16 21 C -0.07 -0.44 8.92 -35.81 -0.32 -0.76 16 22 C -0.10 -0.41 5.61 -27.51 -0.15 -0.56 16 23 C -0.11 -0.44 5.66 -27.33 -0.15 -0.60 16 24 C -0.12 -0.42 5.28 -27.97 -0.15 -0.57 16 25 C -0.12 -0.47 5.66 -27.30 -0.15 -0.62 16 26 C -0.08 -0.34 5.37 -27.49 -0.15 -0.49 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 1.86 6.25 -40.82 -0.26 1.61 16 38 H 0.13 1.00 7.44 -52.49 -0.39 0.61 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.28 6.76 -51.93 -0.35 -0.07 16 41 H 0.07 0.32 7.85 -51.93 -0.41 -0.09 16 42 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.19 7.87 -51.93 -0.41 -0.22 16 45 H 0.06 0.34 7.85 -51.93 -0.41 -0.07 16 46 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.22 5.99 -51.93 -0.31 -0.09 16 48 H 0.08 0.29 6.74 -51.93 -0.35 -0.06 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -37.03 401.97 -10.35 -47.38 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.85 Total: -0.99 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.56 Total: -5.03 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.06 Total: -40.72 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.17 Total: -19.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.03 -10.35 -47.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283185896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds