Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48499 * 109.47253 * 239.99974 * 3 2 1 5 5 H 1.48499 * 109.47339 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47264 * 120.00362 * 3 2 1 7 7 C 1.38792 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00013 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.81003 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47492 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99365 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00370 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00032 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46995 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47125 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47201 * 180.02562 * 16 15 14 18 18 C 1.34781 * 120.00110 * 179.97438 * 17 16 15 19 19 O 1.21615 * 119.99463 * 0.02562 * 18 17 16 20 20 C 1.47095 * 119.99825 * 179.97438 * 18 17 16 21 21 C 1.31567 * 119.84844 * 180.02562 * 20 18 17 22 22 C 1.51416 * 120.28807 * 179.97438 * 21 20 18 23 23 C 1.53036 * 108.57316 * 71.58654 * 22 21 20 24 24 C 1.51777 * 110.81062 * 274.28308 * 23 22 21 25 25 C 1.51786 * 113.84147 * 66.94238 * 24 23 22 26 26 C 1.51409 * 119.85773 * 359.97438 * 20 18 17 27 27 H 0.97005 * 120.00158 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47096 * 59.99645 * 10 9 7 29 29 H 1.09001 * 109.46958 * 300.00298 * 10 9 7 30 30 H 0.96996 * 120.00157 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46759 * 59.99822 * 14 13 11 32 32 H 1.09004 * 109.46982 * 300.00446 * 14 13 11 33 33 H 1.09000 * 109.46875 * 60.00358 * 15 14 13 34 34 H 1.08993 * 109.47413 * 300.00426 * 15 14 13 35 35 H 1.09004 * 109.46539 * 60.00050 * 16 15 14 36 36 H 1.09004 * 109.47072 * 300.00754 * 16 15 14 37 37 H 0.96998 * 119.99990 * 0.02562 * 17 16 15 38 38 H 1.07992 * 119.85439 * 0.25251 * 21 20 18 39 39 H 1.09002 * 109.61778 * 191.31330 * 22 21 20 40 40 H 1.08996 * 109.61877 * 311.67281 * 22 21 20 41 41 H 1.09004 * 109.21328 * 34.62887 * 23 22 21 42 42 H 1.09006 * 109.20656 * 153.98978 * 23 22 21 43 43 H 1.08991 * 108.61196 * 188.06916 * 24 23 22 44 44 H 1.08996 * 108.61254 * 305.96252 * 24 23 22 45 45 H 1.09002 * 109.20924 * 53.39961 * 25 24 23 46 46 H 1.08997 * 109.20960 * 172.76092 * 25 24 23 47 47 H 1.08994 * 109.61661 * 348.70313 * 26 20 18 48 48 H 1.09004 * 109.61952 * 228.15299 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0021 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0030 15 6 3.5023 -8.6986 -0.0042 16 6 2.9658 -10.1314 -0.0047 17 7 4.0880 -11.0731 -0.0052 18 6 3.8539 -12.4004 -0.0053 19 8 2.7111 -12.8163 -0.0054 20 6 4.9808 -13.3459 -0.0064 21 6 4.7490 -14.6410 -0.0069 22 6 5.9014 -15.6231 -0.0086 23 6 6.5709 -15.5913 1.3672 24 6 7.6076 -14.4849 1.4369 25 6 7.0191 -13.0875 1.3682 26 6 6.4023 -12.8244 -0.0080 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7313 0.8894 29 1 3.1244 -3.7313 -0.8905 30 1 3.8008 -6.1836 -0.0022 31 1 1.7218 -7.8744 -0.8933 32 1 1.7214 -7.8758 0.8867 33 1 4.1110 -8.5393 0.8859 34 1 4.1108 -8.5376 -0.8940 35 1 2.3567 -10.2909 -0.8946 36 1 2.3575 -10.2920 0.8854 37 1 4.9995 -10.7413 -0.0048 38 1 3.7323 -15.0051 -0.0107 39 1 5.5267 -16.6266 -0.2103 40 1 6.6220 -15.3404 -0.7760 41 1 5.8125 -15.4209 2.1313 42 1 7.0570 -16.5494 1.5517 43 1 8.1598 -14.5841 2.3713 44 1 8.3040 -14.6079 0.6076 45 1 6.2485 -12.9849 2.1322 46 1 7.8068 -12.3571 1.5529 47 1 6.3989 -11.7533 -0.2093 48 1 6.9809 -13.3416 -0.7734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283185896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = -113.003583 kcal Electronic energy + Delta-G solvation = -25498.827948 eV Core-core repulsion = 21677.885263 eV Total energy + Delta-G solvation = -3820.942685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.19079 -40.59739 -38.93515 -37.26603 -35.60784 -34.57551 -33.66534 -33.06235 -32.31409 -30.48765 -27.71255 -27.06862 -26.23542 -24.84069 -22.88488 -22.38605 -21.73470 -21.21316 -19.86566 -19.29329 -18.19602 -17.71470 -17.62201 -17.14781 -16.88350 -16.84467 -16.41046 -15.94464 -15.76847 -15.59059 -15.46970 -14.94896 -14.67912 -14.50674 -14.38559 -14.20575 -13.97835 -13.81226 -13.37725 -13.26252 -13.16114 -12.92932 -12.85400 -12.64253 -12.60905 -12.55141 -12.11835 -12.08255 -11.73985 -11.60508 -11.51996 -11.32324 -11.11911 -11.02074 -10.87874 -10.28768 -10.26654 -10.13002 -9.90786 -8.66339 -8.33522 -6.12128 0.41105 1.27476 1.44963 1.47742 1.57124 1.61558 2.03236 2.24520 2.28425 2.40722 3.00683 3.33023 3.62630 3.73960 3.84765 3.94702 3.94918 3.99362 4.08014 4.12246 4.14540 4.24179 4.31625 4.47279 4.49348 4.52513 4.55657 4.58910 4.72207 4.77816 4.84040 4.88730 4.96683 5.07012 5.08159 5.24099 5.28173 5.28755 5.33204 5.35432 5.42123 5.42865 5.51950 5.55353 5.65281 6.20448 6.49952 6.53270 7.07593 7.18554 7.25924 8.75469 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030443 B = 0.001371 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.539047 B =20425.328999 C =21165.545015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.121 3.879 15 C -0.121 4.121 16 C 0.122 3.878 17 N -0.710 5.710 18 C 0.544 3.456 19 O -0.595 6.595 20 C -0.189 4.189 21 C -0.069 4.069 22 C -0.092 4.092 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.075 4.075 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.419 0.581 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.888 -31.399 0.777 39.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.364 5.364 14 C -0.003 4.003 15 C -0.159 4.159 16 C -0.003 4.003 17 N -0.363 5.363 18 C 0.334 3.666 19 O -0.478 6.478 20 C -0.192 4.192 21 C -0.089 4.089 22 C -0.129 4.129 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.112 4.112 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.974 -31.905 0.786 38.190 hybrid contribution 1.464 1.456 0.058 2.066 sum 22.438 -30.449 0.844 37.833 Atomic orbital electron populations 1.70186 1.08043 1.28660 1.47977 1.26136 0.95938 1.03362 0.93703 0.84997 0.77784 0.75635 0.79533 1.18594 1.20526 1.18586 1.23185 0.95399 0.91934 1.58958 0.89726 1.85638 1.10829 0.99428 1.97076 1.23367 1.03447 0.94137 1.07004 1.20119 0.86235 0.86846 0.75114 1.90706 1.17658 1.86167 1.50177 1.45645 1.10421 1.04829 1.75545 1.21210 0.97037 0.80119 1.01940 1.21794 0.97415 0.90936 1.05757 1.21149 0.89134 0.87948 1.02048 1.45804 1.10948 1.05129 1.74458 1.18988 0.89093 0.83365 0.75199 1.90784 1.25134 1.79305 1.52568 1.21268 0.95228 0.93940 1.08778 1.23520 1.00482 0.94423 0.90490 1.21013 0.95047 0.98001 0.98825 1.21265 0.98268 0.99846 0.95759 1.21160 0.98059 0.93715 1.02909 1.21324 1.00301 0.97767 0.95916 1.20837 0.89903 1.01592 0.98883 0.92028 0.86965 0.86962 0.74287 0.92414 0.92438 0.88223 0.88155 0.92186 0.92283 0.74404 0.87879 0.89932 0.88845 0.93121 0.90157 0.91732 0.90885 0.93272 0.89913 0.90019 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.55 -31.00 9.50 67.95 0.65 -30.35 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 10 C -0.13 -4.92 6.16 71.23 0.44 -4.49 16 11 C 0.53 19.07 7.85 87.66 0.69 19.76 16 12 O -0.57 -26.46 15.86 -3.05 -0.05 -26.51 16 13 N -0.71 -16.10 5.56 -463.05 -2.57 -18.68 16 14 C 0.12 2.43 5.67 86.38 0.49 2.92 16 15 C -0.12 -1.28 5.44 30.59 0.17 -1.12 16 16 C 0.12 1.87 5.67 86.38 0.49 2.36 16 17 N -0.71 -9.43 5.51 -466.71 -2.57 -12.01 16 18 C 0.54 10.65 7.75 86.57 0.67 11.32 16 19 O -0.60 -17.54 16.18 -4.08 -0.07 -17.60 16 20 C -0.19 -2.50 5.10 -17.89 -0.09 -2.59 16 21 C -0.07 -0.92 8.92 25.34 0.23 -0.69 16 22 C -0.09 -0.63 5.61 30.09 0.17 -0.46 16 23 C -0.11 -0.71 5.66 30.20 0.17 -0.54 16 24 C -0.12 -0.57 5.28 29.79 0.16 -0.41 16 25 C -0.12 -0.65 5.66 30.22 0.17 -0.48 16 26 C -0.07 -0.45 5.37 30.10 0.16 -0.29 16 27 H 0.27 15.51 8.31 -92.70 -0.77 14.73 16 28 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.42 6.02 8.47 -92.71 -0.79 5.24 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.42 2.66 6.25 -92.71 -0.58 2.08 16 38 H 0.10 1.82 7.44 -2.91 -0.02 1.80 16 39 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.42 6.76 -2.39 -0.02 0.41 16 41 H 0.05 0.47 7.85 -2.39 -0.02 0.45 16 42 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.07 0.20 7.87 -2.39 -0.02 0.18 16 45 H 0.05 0.45 7.85 -2.39 -0.02 0.43 16 46 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.08 0.24 5.99 -2.39 -0.01 0.23 16 48 H 0.09 0.37 6.74 -2.39 -0.02 0.35 16 Total: -1.00 -85.46 401.97 0.52 -84.94 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.40 Total: 14.18 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.02 Total: -3.84 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -4.86 Total: -86.53 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.11 Total: -44.12 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -85.46 0.52 -84.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283185896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.061 kcal (2) G-P(sol) polarization free energy of solvation -85.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds