Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99406 * 3 2 1 5 5 H 1.48497 * 109.47572 * 29.99123 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99979 * 3 2 1 7 7 C 1.38796 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00280 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00050 * 180.02562 * 7 2 1 10 10 C 1.81006 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27055 * 11 10 9 13 13 N 1.34784 * 119.99635 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47267 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47277 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47148 * 180.02562 * 16 15 14 18 18 C 1.34779 * 120.00024 * 179.97438 * 17 16 15 19 19 O 1.21275 * 119.99644 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99786 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.46907 * 179.97438 * 20 18 17 22 22 H 1.09007 * 109.35193 * 55.27728 * 21 20 18 23 23 C 1.50062 * 109.35950 * 295.69343 * 21 20 18 24 24 C 1.29441 * 124.07643 * 222.65670 * 23 21 20 25 25 C 1.50069 * 124.07438 * 0.47513 * 24 23 21 26 26 C 1.53022 * 110.14447 * 342.86263 * 25 24 23 27 27 C 1.53022 * 109.35959 * 174.99831 * 21 20 18 28 28 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47091 * 59.99746 * 10 9 7 30 30 H 1.09002 * 109.46815 * 300.00070 * 10 9 7 31 31 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47024 * 300.00310 * 14 13 11 33 33 H 1.09005 * 109.47136 * 59.99926 * 14 13 11 34 34 H 1.09004 * 109.47330 * 300.00096 * 15 14 13 35 35 H 1.09005 * 109.47124 * 59.99892 * 15 14 13 36 36 H 1.08997 * 109.46785 * 299.99511 * 16 15 14 37 37 H 1.08992 * 109.47085 * 59.99748 * 16 15 14 38 38 H 0.97003 * 120.00300 * 359.97438 * 17 16 15 39 39 H 1.08997 * 109.47203 * 299.99783 * 20 18 17 40 40 H 1.09000 * 109.47092 * 60.00657 * 20 18 17 41 41 H 1.08001 * 117.96347 * 42.63714 * 23 21 20 42 42 H 1.08000 * 117.96376 * 180.44176 * 24 23 21 43 43 H 1.09002 * 109.35875 * 222.65893 * 25 24 23 44 44 H 1.08998 * 109.35972 * 103.07086 * 25 24 23 45 45 H 1.09000 * 109.64683 * 289.75270 * 26 25 24 46 46 H 1.09003 * 109.81819 * 169.22819 * 26 25 24 47 47 H 1.08997 * 109.64429 * 289.33388 * 27 21 20 48 48 H 1.09004 * 109.63814 * 49.74745 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4002 5 1 1.4478 2.6528 0.6998 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3440 -2.2965 0.0059 13 7 6.0456 -4.4949 0.0001 14 6 7.4906 -4.7360 -0.0006 15 6 7.7563 -6.2427 -0.0020 16 6 9.2654 -6.4945 -0.0020 17 7 9.5198 -7.9372 -0.0040 18 6 10.7863 -8.3982 -0.0049 19 8 11.7153 -7.6187 -0.0037 20 6 11.0478 -9.8823 -0.0064 21 6 12.5570 -10.1342 -0.0078 22 1 13.0105 -9.6165 0.8375 23 6 13.1476 -9.6096 -1.2837 24 6 14.0404 -10.2359 -1.9810 25 6 14.6021 -11.5789 -1.6163 26 6 14.3103 -11.8908 -0.1470 27 6 12.8208 -11.6364 0.1166 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 5.4290 -5.2436 -0.0007 32 1 7.9332 -4.2885 -0.8906 33 1 7.9339 -4.2893 0.8894 34 1 7.3136 -6.6905 0.8878 35 1 7.3130 -6.6889 -0.8922 36 1 9.7084 -6.0467 -0.8916 37 1 9.7083 -6.0483 0.8883 38 1 8.7767 -8.5607 -0.0046 39 1 10.6053 -10.3301 0.8834 40 1 10.6046 -10.3285 -0.8966 41 1 12.8064 -8.6498 -1.6427 42 1 14.4032 -9.7628 -2.8815 43 1 15.6801 -11.5756 -1.7778 44 1 14.1469 -12.3438 -2.2454 45 1 14.9112 -11.2432 0.4915 46 1 14.5466 -12.9339 0.0634 47 1 12.5639 -11.9715 1.1214 48 1 12.2186 -12.1758 -0.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283187234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = -88.867956 kcal Electronic energy + Delta-G solvation = -25173.610496 eV Core-core repulsion = 21353.714410 eV Total energy + Delta-G solvation = -3819.896086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46990 -39.35173 -38.65751 -36.40223 -34.57562 -33.20382 -32.45469 -31.72293 -31.40444 -29.40653 -27.84109 -25.68506 -25.19205 -22.88614 -22.54344 -22.13949 -20.63315 -20.47927 -18.37070 -17.90559 -17.35050 -16.78999 -16.42837 -16.37446 -16.30813 -15.64919 -15.53993 -14.96734 -14.84815 -14.65784 -14.35732 -13.93847 -13.81026 -13.40177 -13.29835 -13.14450 -13.02082 -12.82249 -12.75549 -12.60166 -12.38899 -12.13372 -11.99970 -11.93992 -11.40846 -11.33684 -11.27860 -11.01740 -10.99948 -10.63281 -10.57159 -10.08781 -9.86973 -9.57294 -9.49416 -9.32977 -9.06102 -8.99862 -8.51854 -6.93662 -6.30463 -4.02425 1.98761 2.26813 2.61673 2.82315 2.93801 3.30160 3.33688 3.49952 3.63483 4.14127 4.23473 4.29076 4.32053 4.44637 4.52855 4.57029 4.59546 4.67920 4.75322 4.81142 4.94311 4.96980 5.08788 5.11328 5.14512 5.19211 5.21306 5.25050 5.27118 5.29786 5.47058 5.49328 5.50597 5.62372 5.68587 5.76147 5.79056 5.87025 5.90267 5.98117 5.98907 6.37566 6.45411 6.63308 7.05124 7.54691 7.83145 7.92565 8.39723 8.44659 9.15844 10.78757 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.001255 C = 0.001239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.216585 B =22313.672145 C =22601.039019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.124 3.876 15 C -0.143 4.143 16 C 0.121 3.879 17 N -0.733 5.733 18 C 0.511 3.489 19 O -0.534 6.534 20 C -0.134 4.134 21 C -0.043 4.043 22 H 0.088 0.912 23 C -0.138 4.138 24 C -0.167 4.167 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.116 4.116 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.486 -28.941 -0.605 37.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.000 4.000 15 C -0.181 4.181 16 C -0.003 4.003 17 N -0.386 5.386 18 C 0.297 3.703 19 O -0.410 6.410 20 C -0.174 4.174 21 C -0.062 4.062 22 H 0.106 0.894 23 C -0.156 4.156 24 C -0.186 4.186 25 C -0.127 4.127 26 C -0.158 4.158 27 C -0.154 4.154 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.289 -26.676 -0.602 37.458 hybrid contribution -1.597 -0.880 -0.124 1.828 sum 24.692 -27.556 -0.725 37.007 Atomic orbital electron populations 1.69940 1.05928 1.27786 1.48046 1.24705 0.94439 0.98959 0.93126 0.86739 0.81908 0.83273 0.79964 1.19188 1.19906 1.15915 1.22318 0.88265 0.97547 1.58860 0.89388 1.84816 1.09287 1.00012 1.97428 1.23280 0.93933 1.04455 1.05820 1.20295 0.90635 0.82245 0.75245 1.90709 1.58784 1.42198 1.47518 1.45926 1.07271 1.08145 1.77934 1.21115 0.81854 0.94110 1.02965 1.21975 0.95732 0.96796 1.03579 1.21224 0.95057 0.80861 1.03141 1.46043 1.08072 1.08205 1.76255 1.20739 0.82482 0.91355 0.75708 1.90728 1.42961 1.58638 1.48682 1.21726 0.98362 0.92724 1.04570 1.19839 0.92923 0.95692 0.97731 0.89426 1.22166 0.97766 0.99827 0.95810 1.22044 0.99168 0.97036 1.00308 1.20439 1.00617 0.95322 0.96371 1.21587 0.96306 1.01361 0.96529 1.21670 0.96832 0.95032 1.01834 0.91926 0.88484 0.88419 0.76660 0.91223 0.91194 0.90435 0.90442 0.90979 0.90934 0.76517 0.88551 0.88688 0.87166 0.88151 0.91316 0.91121 0.91673 0.91628 0.91534 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.13 7.85 -10.98 -0.09 9.04 16 12 O -0.52 -11.06 15.86 5.56 0.09 -10.98 16 13 N -0.74 -8.57 5.56 -60.30 -0.33 -8.91 16 14 C 0.12 1.22 5.67 -4.05 -0.02 1.20 16 15 C -0.14 -0.83 5.44 -26.73 -0.15 -0.98 16 16 C 0.12 0.85 5.67 -4.04 -0.02 0.82 16 17 N -0.73 -4.20 5.56 -60.30 -0.33 -4.53 16 18 C 0.51 3.95 7.46 -10.98 -0.08 3.87 16 19 O -0.53 -6.37 14.25 5.56 0.08 -6.29 16 20 C -0.13 -0.63 5.14 -27.88 -0.14 -0.78 16 21 C -0.04 -0.27 2.12 -92.07 -0.19 -0.47 16 22 H 0.09 0.68 7.96 -51.93 -0.41 0.27 16 23 C -0.14 -1.09 8.41 -35.90 -0.30 -1.40 16 24 C -0.17 -1.19 9.80 -35.90 -0.35 -1.54 16 25 C -0.09 -0.49 6.12 -28.18 -0.17 -0.66 16 26 C -0.12 -0.59 6.01 -26.52 -0.16 -0.75 16 27 C -0.12 -0.53 5.30 -26.52 -0.14 -0.67 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 30 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 31 H 0.40 3.36 8.47 -40.82 -0.35 3.02 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.40 1.13 8.47 -40.82 -0.35 0.79 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 1.08 6.47 -52.49 -0.34 0.74 16 42 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 LS Contribution 405.11 15.07 6.10 6.10 Total: -1.00 -36.47 405.11 -9.92 -46.40 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.21 Total: -1.21 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.39 Total: -6.36 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.11 Total: -39.11 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.17 Total: -17.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.47 -9.92 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283187234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.469 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds