Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99406 * 3 2 1 5 5 H 1.48497 * 109.47572 * 29.99123 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99979 * 3 2 1 7 7 C 1.38796 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00280 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00050 * 180.02562 * 7 2 1 10 10 C 1.81006 * 100.00155 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27055 * 11 10 9 13 13 N 1.34784 * 119.99635 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47267 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47277 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47148 * 180.02562 * 16 15 14 18 18 C 1.34779 * 120.00024 * 179.97438 * 17 16 15 19 19 O 1.21275 * 119.99644 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99786 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.46907 * 179.97438 * 20 18 17 22 22 H 1.09007 * 109.35193 * 55.27728 * 21 20 18 23 23 C 1.50062 * 109.35950 * 295.69343 * 21 20 18 24 24 C 1.29441 * 124.07643 * 222.65670 * 23 21 20 25 25 C 1.50069 * 124.07438 * 0.47513 * 24 23 21 26 26 C 1.53022 * 110.14447 * 342.86263 * 25 24 23 27 27 C 1.53022 * 109.35959 * 174.99831 * 21 20 18 28 28 H 0.97005 * 119.99693 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47091 * 59.99746 * 10 9 7 30 30 H 1.09002 * 109.46815 * 300.00070 * 10 9 7 31 31 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47024 * 300.00310 * 14 13 11 33 33 H 1.09005 * 109.47136 * 59.99926 * 14 13 11 34 34 H 1.09004 * 109.47330 * 300.00096 * 15 14 13 35 35 H 1.09005 * 109.47124 * 59.99892 * 15 14 13 36 36 H 1.08997 * 109.46785 * 299.99511 * 16 15 14 37 37 H 1.08992 * 109.47085 * 59.99748 * 16 15 14 38 38 H 0.97003 * 120.00300 * 359.97438 * 17 16 15 39 39 H 1.08997 * 109.47203 * 299.99783 * 20 18 17 40 40 H 1.09000 * 109.47092 * 60.00657 * 20 18 17 41 41 H 1.08001 * 117.96347 * 42.63714 * 23 21 20 42 42 H 1.08000 * 117.96376 * 180.44176 * 24 23 21 43 43 H 1.09002 * 109.35875 * 222.65893 * 25 24 23 44 44 H 1.08998 * 109.35972 * 103.07086 * 25 24 23 45 45 H 1.09000 * 109.64683 * 289.75270 * 26 25 24 46 46 H 1.09003 * 109.81819 * 169.22819 * 26 25 24 47 47 H 1.08997 * 109.64429 * 289.33388 * 27 21 20 48 48 H 1.09004 * 109.63814 * 49.74745 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4002 5 1 1.4478 2.6528 0.6998 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 8 6.3440 -2.2965 0.0059 13 7 6.0456 -4.4949 0.0001 14 6 7.4906 -4.7360 -0.0006 15 6 7.7563 -6.2427 -0.0020 16 6 9.2654 -6.4945 -0.0020 17 7 9.5198 -7.9372 -0.0040 18 6 10.7863 -8.3982 -0.0049 19 8 11.7153 -7.6187 -0.0037 20 6 11.0478 -9.8823 -0.0064 21 6 12.5570 -10.1342 -0.0078 22 1 13.0105 -9.6165 0.8375 23 6 13.1476 -9.6096 -1.2837 24 6 14.0404 -10.2359 -1.9810 25 6 14.6021 -11.5789 -1.6163 26 6 14.3103 -11.8908 -0.1470 27 6 12.8208 -11.6364 0.1166 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4315 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 5.4290 -5.2436 -0.0007 32 1 7.9332 -4.2885 -0.8906 33 1 7.9339 -4.2893 0.8894 34 1 7.3136 -6.6905 0.8878 35 1 7.3130 -6.6889 -0.8922 36 1 9.7084 -6.0467 -0.8916 37 1 9.7083 -6.0483 0.8883 38 1 8.7767 -8.5607 -0.0046 39 1 10.6053 -10.3301 0.8834 40 1 10.6046 -10.3285 -0.8966 41 1 12.8064 -8.6498 -1.6427 42 1 14.4032 -9.7628 -2.8815 43 1 15.6801 -11.5756 -1.7778 44 1 14.1469 -12.3438 -2.2454 45 1 14.9112 -11.2432 0.4915 46 1 14.5466 -12.9339 0.0634 47 1 12.5639 -11.9715 1.1214 48 1 12.2186 -12.1758 -0.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283187234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = -114.617820 kcal Electronic energy + Delta-G solvation = -25174.727094 eV Core-core repulsion = 21353.714410 eV Total energy + Delta-G solvation = -3821.012684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.05472 -40.63864 -39.16380 -37.21062 -35.51195 -34.67131 -33.70064 -32.62955 -31.86716 -30.65032 -28.41044 -27.84991 -25.99493 -23.37947 -23.01393 -22.75893 -21.77433 -21.20101 -19.87081 -18.84319 -18.04537 -17.71357 -17.52402 -17.15217 -17.09944 -16.92812 -16.55184 -16.46273 -15.75913 -15.65029 -15.08279 -14.99751 -14.84930 -14.59230 -14.54982 -14.02600 -13.75620 -13.53667 -13.41850 -13.36805 -13.29707 -13.13727 -13.01155 -12.94512 -12.61621 -12.61159 -12.37023 -12.06946 -11.86862 -11.71799 -11.42687 -11.17196 -11.08777 -11.01769 -10.66740 -10.52884 -10.16335 -10.07325 -9.87234 -8.99710 -8.51735 -6.22406 0.99280 1.31222 1.41813 1.46897 1.55513 1.56256 1.69526 2.06894 2.24826 2.40464 2.72890 2.86888 3.68439 3.78904 3.81836 3.89787 3.96542 3.98707 4.01886 4.11608 4.24592 4.30046 4.41509 4.48154 4.50434 4.51572 4.55405 4.58180 4.70901 4.76917 4.82726 4.86772 4.90908 5.07998 5.09254 5.11115 5.11353 5.23851 5.38962 5.42306 5.46064 5.51680 5.70767 5.81877 6.09142 6.11454 6.47355 6.60112 6.93957 7.20240 7.32035 8.60602 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.001255 C = 0.001239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.216585 B =22313.672145 C =22601.039019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.121 3.879 15 C -0.122 4.122 16 C 0.123 3.877 17 N -0.719 5.719 18 C 0.504 3.496 19 O -0.584 6.584 20 C -0.126 4.126 21 C -0.043 4.043 22 H 0.066 0.934 23 C -0.152 4.152 24 C -0.169 4.169 25 C -0.090 4.090 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.420 0.580 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.419 0.581 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.741 -31.750 -0.406 40.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.261 4.261 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.364 5.364 14 C -0.003 4.003 15 C -0.160 4.160 16 C -0.002 4.002 17 N -0.372 5.372 18 C 0.292 3.708 19 O -0.464 6.464 20 C -0.165 4.165 21 C -0.062 4.062 22 H 0.084 0.916 23 C -0.170 4.170 24 C -0.187 4.187 25 C -0.127 4.127 26 C -0.160 4.160 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 26.500 -29.571 -0.402 39.709 hybrid contribution -1.611 -0.151 -0.219 1.633 sum 24.888 -29.722 -0.621 38.772 Atomic orbital electron populations 1.70014 1.07272 1.29001 1.49193 1.25526 0.95221 1.02144 0.92884 0.85894 0.80686 0.79772 0.80190 1.18754 1.18328 1.16182 1.22464 0.90189 0.96739 1.58210 0.91771 1.84780 1.06519 1.06548 1.97601 1.23273 0.95784 0.99408 1.07674 1.20002 0.89452 0.83467 0.75279 1.90701 1.59420 1.44040 1.50253 1.45651 1.08606 1.06805 1.75321 1.21237 0.80131 0.96957 1.01991 1.21802 0.94796 0.93739 1.05658 1.21075 0.95743 0.81614 1.01728 1.45901 1.08247 1.07923 1.75168 1.21362 0.82297 0.92481 0.74638 1.90714 1.44581 1.60089 1.51052 1.21753 0.97482 0.90461 1.06805 1.19829 0.93839 0.96764 0.95761 0.91616 1.22149 0.98736 0.99043 0.97068 1.22242 0.98529 0.97930 0.99977 1.20484 1.00858 0.94324 0.97067 1.21621 0.96554 1.02035 0.95799 1.21661 0.96665 0.93459 1.03040 0.91373 0.86618 0.86553 0.74266 0.92369 0.92289 0.88257 0.88362 0.92634 0.92447 0.74380 0.85677 0.86705 0.89857 0.88557 0.90885 0.89896 0.92856 0.90028 0.90069 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.97 21.65 0.30 -55.17 16 2 C 0.05 2.78 5.50 84.86 0.47 3.25 16 3 Si 0.91 44.91 27.74 68.60 1.90 46.82 16 4 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 7 C -0.53 -30.46 10.04 67.95 0.68 -29.77 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 10 C -0.11 -3.98 6.16 71.23 0.44 -3.54 16 11 C 0.53 17.50 7.85 87.65 0.69 18.19 16 12 O -0.57 -23.97 15.86 -3.01 -0.05 -24.02 16 13 N -0.71 -14.59 5.56 -463.07 -2.57 -17.16 16 14 C 0.12 2.16 5.67 86.38 0.49 2.65 16 15 C -0.12 -1.05 5.44 30.59 0.17 -0.89 16 16 C 0.12 1.58 5.67 86.38 0.49 2.07 16 17 N -0.72 -6.83 5.56 -463.07 -2.57 -9.40 16 18 C 0.50 7.41 7.46 87.66 0.65 8.06 16 19 O -0.58 -14.58 14.25 -3.01 -0.04 -14.63 16 20 C -0.13 -0.93 5.14 29.85 0.15 -0.77 16 21 C -0.04 -0.51 2.12 -11.73 -0.02 -0.54 16 22 H 0.07 1.06 7.96 -2.38 -0.02 1.04 16 23 C -0.15 -2.48 8.41 27.04 0.23 -2.25 16 24 C -0.17 -2.39 9.80 27.04 0.27 -2.13 16 25 C -0.09 -0.86 6.12 29.66 0.18 -0.68 16 26 C -0.12 -1.01 6.01 30.73 0.18 -0.82 16 27 C -0.11 -0.77 5.30 30.73 0.16 -0.61 16 28 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 31 H 0.42 5.39 8.47 -92.71 -0.79 4.61 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.10 0.53 8.14 -2.38 -0.02 0.52 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 0.90 8.47 -92.71 -0.79 0.12 16 39 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 1.79 6.47 -2.91 -0.02 1.78 16 42 H 0.10 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 46 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.08 0.40 8.10 -2.39 -0.02 0.38 16 Total: -1.00 -82.52 405.11 0.49 -82.03 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -0.65 Total: 9.42 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.23 Total: -7.77 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -4.84 Total: -81.73 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.09 Total: -38.65 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -82.52 0.49 -82.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283187234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.589 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds