Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47014 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47203 * 120.00197 * 3 2 1 6 6 H 1.48508 * 109.46754 * 239.99827 * 3 2 1 7 7 C 1.38805 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00288 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00143 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99730 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99930 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.50102 * 324.93537 * 14 13 11 16 16 C 1.53046 * 109.49773 * 84.99820 * 14 13 11 17 17 C 1.53042 * 109.53732 * 181.31381 * 16 14 13 18 18 C 1.53190 * 109.31482 * 298.63776 * 17 16 14 19 19 N 1.46921 * 108.77804 * 54.63545 * 18 17 16 20 20 C 1.34775 * 120.63658 * 126.36988 * 19 18 17 21 21 O 1.21289 * 119.99665 * 354.79028 * 20 19 18 22 22 C 1.50701 * 120.00391 * 174.79045 * 20 19 18 23 23 C 1.54273 * 110.02799 * 275.41920 * 22 20 19 24 24 C 1.54968 * 104.15672 * 217.13558 * 23 22 20 25 25 C 1.54886 * 102.77643 * 37.89058 * 24 23 22 26 26 C 1.53872 * 110.03269 * 158.20556 * 22 20 19 27 27 C 1.46928 * 118.73546 * 306.39233 * 19 18 17 28 28 H 0.97006 * 120.00189 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46870 * 300.00298 * 10 9 7 30 30 H 1.09003 * 109.46805 * 59.99636 * 10 9 7 31 31 H 0.96996 * 120.00296 * 359.97438 * 13 11 10 32 32 H 1.08994 * 109.45699 * 301.33502 * 16 14 13 33 33 H 1.08997 * 109.45776 * 61.29927 * 16 14 13 34 34 H 1.09005 * 109.49565 * 58.58816 * 17 16 14 35 35 H 1.08995 * 109.49737 * 178.64721 * 17 16 14 36 36 H 1.08998 * 109.58609 * 174.42048 * 18 17 16 37 37 H 1.09002 * 109.58506 * 294.70179 * 18 17 16 38 38 H 1.08992 * 110.01840 * 36.80912 * 22 20 19 39 39 H 1.08995 * 110.48906 * 335.78606 * 23 22 20 40 40 H 1.09003 * 110.48165 * 98.43089 * 23 22 20 41 41 H 1.09005 * 110.71787 * 279.57592 * 24 23 22 42 42 H 1.08997 * 110.92466 * 156.29718 * 24 23 22 43 43 H 1.09003 * 110.48191 * 203.40557 * 25 24 23 44 44 H 1.09000 * 110.60325 * 80.82132 * 25 24 23 45 45 H 1.09002 * 110.02926 * 238.56909 * 26 22 20 46 46 H 1.08998 * 110.03304 * 359.94750 * 26 22 20 47 47 H 1.09003 * 109.58836 * 293.82017 * 27 19 18 48 48 H 1.09006 * 109.58751 * 173.39672 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0018 14 6 2.3304 -7.7150 0.0019 15 1 1.4149 -7.7607 0.5917 16 6 2.0341 -8.1496 -1.4354 17 6 1.4666 -9.5709 -1.4337 18 6 2.5045 -10.5302 -0.8426 19 7 2.9026 -10.0379 0.4831 20 6 2.8327 -10.8407 1.5634 21 8 2.3502 -11.9492 1.4649 22 6 3.3538 -10.3613 2.8937 23 6 4.8732 -10.6121 2.9874 24 6 5.1001 -11.0162 4.4661 25 6 3.8503 -11.8747 4.7823 26 6 2.7037 -11.1634 4.0345 27 6 3.3780 -8.6533 0.6090 28 1 -0.4851 0.8401 0.0004 29 1 3.1244 -3.7313 -0.8895 30 1 3.1244 -3.7313 0.8905 31 1 3.8008 -6.1835 0.0015 32 1 1.3071 -7.4688 -1.8780 33 1 2.9547 -8.1269 -2.0186 34 1 0.5594 -9.5996 -0.8301 35 1 1.2335 -9.8708 -2.4553 36 1 2.0699 -11.5252 -0.7475 37 1 3.3761 -10.5730 -1.4958 38 1 3.1425 -9.2992 3.0163 39 1 5.1678 -11.4227 2.3210 40 1 5.4252 -9.7025 2.7506 41 1 5.1350 -10.1344 5.1059 42 1 6.0107 -11.6056 4.5732 43 1 3.6569 -11.8862 5.8550 44 1 3.9778 -12.8903 4.4077 45 1 2.1775 -10.4903 4.7114 46 1 2.0105 -11.8988 3.6261 47 1 4.3220 -8.5411 0.0756 48 1 3.5199 -8.4100 1.6621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283454839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = -90.348123 kcal Electronic energy + Delta-G solvation = -27381.644855 eV Core-core repulsion = 23561.684584 eV Total energy + Delta-G solvation = -3819.960271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94215 -39.50161 -38.00697 -36.98667 -34.40979 -33.00883 -32.46034 -30.80350 -29.53473 -29.03791 -28.37293 -25.77593 -25.51663 -23.38876 -22.20265 -21.08399 -20.52620 -20.46091 -18.87508 -17.95872 -17.90339 -16.65282 -16.34468 -16.13277 -15.61389 -15.27731 -15.12333 -14.96303 -14.83236 -14.38040 -14.14513 -14.02078 -13.73278 -13.62860 -13.26084 -13.15858 -13.05257 -12.59035 -12.15106 -12.10255 -11.74025 -11.66489 -11.51962 -11.45169 -11.39552 -11.12810 -11.10858 -11.08644 -11.07440 -11.05809 -10.79578 -10.75636 -9.96451 -9.86192 -9.48778 -9.16524 -9.08457 -8.86372 -8.28158 -6.53950 -6.24587 -3.95685 2.28878 2.51543 2.99494 3.03417 3.21090 3.25475 3.28613 3.63826 4.05475 4.17419 4.21937 4.24292 4.35890 4.46798 4.66762 4.71266 4.80913 4.89731 4.94486 5.05710 5.08780 5.08887 5.10578 5.18437 5.22579 5.26441 5.33815 5.40710 5.44202 5.53130 5.56089 5.57673 5.59951 5.74146 5.78042 5.79246 5.83096 5.94641 6.00551 6.01523 6.07454 6.09667 6.16485 6.52537 7.02769 7.55921 7.59913 7.86346 8.31747 8.52537 9.20590 10.82719 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.002204 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.669058 B =12702.878072 C =13734.961830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.735 5.735 14 C 0.133 3.867 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.131 4.131 18 C 0.108 3.892 19 N -0.608 5.608 20 C 0.525 3.475 21 O -0.538 6.538 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.117 4.117 27 C 0.100 3.900 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.393 -22.936 3.666 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.389 5.389 14 C 0.027 3.973 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.014 4.014 19 N -0.342 5.342 20 C 0.314 3.686 21 O -0.415 6.415 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.024 4.024 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.094 0.906 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.938 -23.757 3.614 26.004 hybrid contribution 2.438 1.601 -0.173 2.922 sum 12.377 -22.156 3.441 25.611 Atomic orbital electron populations 1.70002 1.05961 1.27615 1.46669 1.24993 0.95029 0.99041 0.94502 0.86225 0.79243 0.81236 0.78801 1.20803 1.19925 1.19936 1.22818 0.94856 0.91636 1.59189 0.90966 1.85419 1.04813 0.96331 1.96734 1.23533 1.06656 0.95245 1.04970 1.20329 0.86529 0.86214 0.74864 1.90715 1.15336 1.85484 1.47141 1.45962 1.09967 1.04864 1.78130 1.21170 0.97890 0.81045 0.97183 0.88923 1.21950 1.01955 0.96584 0.96564 1.21883 0.98809 0.94526 1.01792 1.21673 0.98062 0.99052 0.82570 1.47990 1.65708 1.12123 1.08331 1.20629 0.77615 0.84837 0.85531 1.90668 1.44941 1.20905 1.84966 1.22049 0.97309 1.01899 0.92644 1.22300 0.92606 1.01890 0.97870 1.22516 0.98217 0.99920 0.95471 1.22343 0.94440 0.99224 1.00021 1.22148 0.98498 0.99361 0.95435 1.21998 0.96918 0.80691 1.02748 0.92092 0.89171 0.89168 0.76789 0.90433 0.91566 0.91106 0.90238 0.88828 0.91368 0.88523 0.91210 0.90829 0.91075 0.91264 0.91460 0.91451 0.91250 0.89748 0.90586 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 11 C 0.53 9.21 7.81 -10.99 -0.09 9.12 16 12 O -0.51 -11.04 15.53 5.56 0.09 -10.96 16 13 N -0.73 -8.48 5.08 -53.69 -0.27 -8.75 16 14 C 0.13 1.40 2.60 -67.81 -0.18 1.23 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 16 C -0.13 -1.34 5.46 -26.69 -0.15 -1.49 16 17 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 18 C 0.11 0.94 6.44 -3.71 -0.02 0.92 16 19 N -0.61 -5.54 2.97 -172.77 -0.51 -6.05 16 20 C 0.53 5.58 6.71 -10.99 -0.07 5.50 16 21 O -0.54 -7.49 14.90 5.55 0.08 -7.41 16 22 C -0.12 -0.97 2.50 -90.65 -0.23 -1.19 16 23 C -0.11 -0.72 6.36 -25.03 -0.16 -0.88 16 24 C -0.12 -0.75 6.91 -24.70 -0.17 -0.93 16 25 C -0.12 -0.87 6.83 -25.08 -0.17 -1.04 16 26 C -0.12 -0.99 6.34 -25.62 -0.16 -1.16 16 27 C 0.10 0.76 5.79 -3.71 -0.02 0.74 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 30 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 31 H 0.40 3.29 8.60 -40.82 -0.35 2.94 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.92 7.00 -51.93 -0.36 0.56 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.71 6.16 -51.93 -0.32 0.39 16 39 H 0.07 0.53 7.85 -51.93 -0.41 0.12 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.89 6.64 -51.93 -0.34 0.54 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.63 5.41 -51.93 -0.28 0.34 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -35.07 393.46 -10.27 -45.35 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.92 Total: 0.66 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.16 Total: -5.90 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.05 Total: -39.90 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.07 -10.27 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283454839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.003 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds