Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47014 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47203 * 120.00197 * 3 2 1 6 6 H 1.48508 * 109.46754 * 239.99827 * 3 2 1 7 7 C 1.38805 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00288 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00143 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47416 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99730 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99930 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.50102 * 324.93537 * 14 13 11 16 16 C 1.53046 * 109.49773 * 84.99820 * 14 13 11 17 17 C 1.53042 * 109.53732 * 181.31381 * 16 14 13 18 18 C 1.53190 * 109.31482 * 298.63776 * 17 16 14 19 19 N 1.46921 * 108.77804 * 54.63545 * 18 17 16 20 20 C 1.34775 * 120.63658 * 126.36988 * 19 18 17 21 21 O 1.21289 * 119.99665 * 354.79028 * 20 19 18 22 22 C 1.50701 * 120.00391 * 174.79045 * 20 19 18 23 23 C 1.54273 * 110.02799 * 275.41920 * 22 20 19 24 24 C 1.54968 * 104.15672 * 217.13558 * 23 22 20 25 25 C 1.54886 * 102.77643 * 37.89058 * 24 23 22 26 26 C 1.53872 * 110.03269 * 158.20556 * 22 20 19 27 27 C 1.46928 * 118.73546 * 306.39233 * 19 18 17 28 28 H 0.97006 * 120.00189 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46870 * 300.00298 * 10 9 7 30 30 H 1.09003 * 109.46805 * 59.99636 * 10 9 7 31 31 H 0.96996 * 120.00296 * 359.97438 * 13 11 10 32 32 H 1.08994 * 109.45699 * 301.33502 * 16 14 13 33 33 H 1.08997 * 109.45776 * 61.29927 * 16 14 13 34 34 H 1.09005 * 109.49565 * 58.58816 * 17 16 14 35 35 H 1.08995 * 109.49737 * 178.64721 * 17 16 14 36 36 H 1.08998 * 109.58609 * 174.42048 * 18 17 16 37 37 H 1.09002 * 109.58506 * 294.70179 * 18 17 16 38 38 H 1.08992 * 110.01840 * 36.80912 * 22 20 19 39 39 H 1.08995 * 110.48906 * 335.78606 * 23 22 20 40 40 H 1.09003 * 110.48165 * 98.43089 * 23 22 20 41 41 H 1.09005 * 110.71787 * 279.57592 * 24 23 22 42 42 H 1.08997 * 110.92466 * 156.29718 * 24 23 22 43 43 H 1.09003 * 110.48191 * 203.40557 * 25 24 23 44 44 H 1.09000 * 110.60325 * 80.82132 * 25 24 23 45 45 H 1.09002 * 110.02926 * 238.56909 * 26 22 20 46 46 H 1.08998 * 110.03304 * 359.94750 * 26 22 20 47 47 H 1.09003 * 109.58836 * 293.82017 * 27 19 18 48 48 H 1.09006 * 109.58751 * 173.39672 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1040 1.6963 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0018 14 6 2.3304 -7.7150 0.0019 15 1 1.4149 -7.7607 0.5917 16 6 2.0341 -8.1496 -1.4354 17 6 1.4666 -9.5709 -1.4337 18 6 2.5045 -10.5302 -0.8426 19 7 2.9026 -10.0379 0.4831 20 6 2.8327 -10.8407 1.5634 21 8 2.3502 -11.9492 1.4649 22 6 3.3538 -10.3613 2.8937 23 6 4.8732 -10.6121 2.9874 24 6 5.1001 -11.0162 4.4661 25 6 3.8503 -11.8747 4.7823 26 6 2.7037 -11.1634 4.0345 27 6 3.3780 -8.6533 0.6090 28 1 -0.4851 0.8401 0.0004 29 1 3.1244 -3.7313 -0.8895 30 1 3.1244 -3.7313 0.8905 31 1 3.8008 -6.1835 0.0015 32 1 1.3071 -7.4688 -1.8780 33 1 2.9547 -8.1269 -2.0186 34 1 0.5594 -9.5996 -0.8301 35 1 1.2335 -9.8708 -2.4553 36 1 2.0699 -11.5252 -0.7475 37 1 3.3761 -10.5730 -1.4958 38 1 3.1425 -9.2992 3.0163 39 1 5.1678 -11.4227 2.3210 40 1 5.4252 -9.7025 2.7506 41 1 5.1350 -10.1344 5.1059 42 1 6.0107 -11.6056 4.5732 43 1 3.6569 -11.8862 5.8550 44 1 3.9778 -12.8903 4.4077 45 1 2.1775 -10.4903 4.7114 46 1 2.0105 -11.8988 3.6261 47 1 4.3220 -8.5411 0.0756 48 1 3.5199 -8.4100 1.6621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283454839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = -113.547211 kcal Electronic energy + Delta-G solvation = -27382.650843 eV Core-core repulsion = 23561.684584 eV Total energy + Delta-G solvation = -3820.966259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74872 -40.68256 -38.86179 -37.79084 -35.51736 -34.56710 -33.82498 -31.94925 -30.24759 -29.60028 -29.54672 -27.63358 -26.52520 -24.20405 -23.05360 -21.73718 -21.55649 -21.26532 -19.96386 -19.49777 -18.69789 -17.89586 -17.47387 -16.95874 -16.86047 -16.44547 -16.34504 -16.05018 -15.79528 -15.72177 -15.21736 -14.98437 -14.72498 -14.49144 -14.42021 -14.24318 -13.91800 -13.75667 -13.55337 -13.15170 -12.85324 -12.77871 -12.61842 -12.53233 -12.34634 -12.22363 -12.05412 -12.00050 -11.91494 -11.89944 -11.72652 -11.63560 -11.38885 -11.11241 -10.95053 -10.77380 -10.24837 -10.18011 -9.72562 -8.64777 -8.32958 -6.10778 1.26456 1.44303 1.45169 1.51426 1.57906 1.63142 1.83513 2.28754 2.36984 3.01321 3.31773 3.39590 3.60850 3.63137 3.65570 3.74177 3.92111 3.94554 4.04237 4.12657 4.24066 4.33764 4.35372 4.46627 4.47143 4.51867 4.55374 4.60730 4.64603 4.70861 4.78236 4.79893 4.82594 4.94270 4.96447 5.06800 5.14214 5.20511 5.22692 5.24183 5.31407 5.41152 5.43489 5.46522 5.53020 6.21229 6.26934 6.53185 7.07474 7.08492 7.27775 8.75824 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016431 B = 0.002204 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.669058 B =12702.878072 C =13734.961830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.134 3.866 15 H 0.059 0.941 16 C -0.127 4.127 17 C -0.125 4.125 18 C 0.110 3.890 19 N -0.606 5.606 20 C 0.520 3.480 21 O -0.580 6.580 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.121 4.121 27 C 0.107 3.893 28 H 0.270 0.730 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.421 0.579 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.112 0.888 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.461 -22.538 3.767 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.207 1.207 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.358 5.358 14 C 0.028 3.972 15 H 0.077 0.923 16 C -0.166 4.166 17 C -0.163 4.163 18 C -0.012 4.012 19 N -0.339 5.339 20 C 0.310 3.690 21 O -0.460 6.460 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.130 0.870 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.077 -23.377 3.708 27.539 hybrid contribution 1.159 1.333 -0.225 1.780 sum 15.236 -22.044 3.483 27.022 Atomic orbital electron populations 1.70179 1.08016 1.28610 1.48080 1.26131 0.95936 1.03366 0.93831 0.85016 0.77791 0.75729 0.79549 1.20675 1.18546 1.18618 1.23173 0.95378 0.91927 1.58735 0.89709 1.85641 1.10817 0.99397 1.97067 1.23366 1.03423 0.94057 1.07074 1.20063 0.86198 0.86656 0.74770 1.90713 1.17637 1.86016 1.49879 1.45574 1.10462 1.04065 1.75716 1.21215 0.97852 0.80777 0.97360 0.92266 1.21896 1.02227 0.96224 0.96253 1.21821 0.97977 0.94168 1.02369 1.21702 0.98765 0.97950 0.82804 1.48072 1.65089 1.12521 1.08187 1.21104 0.76984 0.84429 0.86533 1.90652 1.46854 1.22845 1.85624 1.22122 0.98484 1.02273 0.90880 1.22322 0.91206 1.02651 0.98027 1.22525 0.97780 1.00164 0.95241 1.22347 0.94627 0.98786 1.00313 1.22163 0.98728 0.99082 0.95926 1.22091 0.96768 0.78747 1.04026 0.92080 0.86995 0.86820 0.74122 0.93708 0.88957 0.93566 0.88668 0.90389 0.88686 0.87201 0.92213 0.88466 0.89981 0.90301 0.90545 0.92519 0.90654 0.92530 0.86964 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.49 13.22 21.65 0.29 -55.20 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.54 -30.21 9.50 67.96 0.65 -29.56 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.16 -8.43 20.57 -56.49 -1.16 -9.59 16 10 C -0.13 -4.66 6.16 71.24 0.44 -4.22 16 11 C 0.54 17.99 7.81 87.66 0.68 18.67 16 12 O -0.56 -24.96 15.53 -3.04 -0.05 -25.01 16 13 N -0.70 -14.34 5.08 -442.17 -2.25 -16.59 16 14 C 0.13 2.59 2.60 45.07 0.12 2.70 16 15 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 16 C -0.13 -2.41 5.46 30.62 0.17 -2.24 16 17 C -0.12 -2.16 6.08 30.67 0.19 -1.98 16 18 C 0.11 1.73 6.44 86.36 0.56 2.29 16 19 N -0.61 -9.93 2.97 -818.90 -2.43 -12.37 16 20 C 0.52 10.66 6.71 87.66 0.59 11.25 16 21 O -0.58 -16.62 14.90 -3.06 -0.05 -16.66 16 22 C -0.12 -1.73 2.50 -10.81 -0.03 -1.75 16 23 C -0.10 -1.09 6.36 31.70 0.20 -0.89 16 24 C -0.12 -1.15 6.91 31.91 0.22 -0.93 16 25 C -0.12 -1.63 6.83 31.67 0.22 -1.41 16 26 C -0.12 -2.03 6.34 31.32 0.20 -1.83 16 27 C 0.11 1.25 5.79 86.36 0.50 1.75 16 28 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 29 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 30 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.42 5.00 8.60 -92.71 -0.80 4.20 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.32 6.16 -2.39 -0.01 1.30 16 39 H 0.06 0.77 7.85 -2.39 -0.02 0.75 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.27 6.64 -2.39 -0.02 1.25 16 47 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 1.01 5.41 -2.38 -0.01 0.99 16 Total: -1.00 -81.68 393.46 1.70 -79.98 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.16 Total: 17.80 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.16 Total: -7.01 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -4.39 Total: -84.15 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.68 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -81.68 1.70 -79.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283454839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.564 kcal (2) G-P(sol) polarization free energy of solvation -81.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds