Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00048 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99755 * 3 2 1 5 5 H 1.48502 * 109.47105 * 29.99685 * 3 2 1 6 6 H 1.48500 * 109.47312 * 149.99570 * 3 2 1 7 7 C 1.38793 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99946 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47178 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.88553 * 308.87752 * 15 14 13 17 17 C 1.55156 * 111.00651 * 72.80408 * 15 14 13 18 18 C 1.54327 * 102.94373 * 153.57527 * 17 15 14 19 19 N 1.47025 * 107.26990 * 337.80735 * 18 17 15 20 20 C 1.34773 * 125.65063 * 178.90939 * 19 18 17 21 21 O 1.21279 * 120.00339 * 180.02562 * 20 19 18 22 22 C 1.50708 * 119.99568 * 0.03381 * 20 19 18 23 23 C 1.53002 * 109.46991 * 180.02562 * 22 20 19 24 24 C 1.52990 * 109.47050 * 180.02562 * 23 22 20 25 25 C 1.53009 * 117.49648 * 243.62029 * 24 23 22 26 26 C 1.53005 * 59.99944 * 252.50857 * 25 24 23 27 27 C 1.47426 * 108.70297 * 358.93673 * 19 18 17 28 28 H 0.97005 * 120.00180 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47154 * 59.99907 * 10 9 7 30 30 H 1.09001 * 109.47171 * 299.99889 * 10 9 7 31 31 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 33 33 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 34 34 H 1.08998 * 110.71544 * 271.93619 * 17 15 14 35 35 H 1.08995 * 110.71835 * 35.21168 * 17 15 14 36 36 H 1.08991 * 109.88124 * 218.38809 * 18 17 15 37 37 H 1.09001 * 109.88298 * 97.21824 * 18 17 15 38 38 H 1.08997 * 109.47214 * 300.00458 * 22 20 19 39 39 H 1.09004 * 109.46842 * 60.00619 * 22 20 19 40 40 H 1.09003 * 109.46571 * 300.00146 * 23 22 20 41 41 H 1.08997 * 109.47230 * 60.00037 * 23 22 20 42 42 H 1.08997 * 115.55203 * 29.32935 * 24 23 22 43 43 H 1.08994 * 117.49868 * 0.02562 * 25 24 23 44 44 H 1.08995 * 117.49639 * 145.02425 * 25 24 23 45 45 H 1.08994 * 117.49852 * 252.50860 * 26 25 24 46 46 H 1.09005 * 117.49483 * 107.48557 * 26 25 24 47 47 H 1.09000 * 110.36985 * 265.29213 * 27 19 18 48 48 H 1.09000 * 110.36644 * 142.96955 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7722 -1.2020 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0008 12 8 6.3440 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0001 14 6 7.4907 -4.7358 0.0006 15 6 7.7563 -6.2425 -0.0011 16 1 7.1939 -6.7372 0.7909 17 6 7.4319 -6.8630 -1.3857 18 6 8.3480 -8.1041 -1.4316 19 7 9.4474 -7.8703 -0.4838 20 6 10.4498 -8.7305 -0.2158 21 8 11.3068 -8.4314 0.5885 22 6 10.5057 -10.0639 -0.9159 23 6 11.7321 -10.8417 -0.4343 24 6 11.7892 -12.1951 -1.1454 25 6 11.6565 -13.4522 -0.2833 26 6 13.0118 -13.0780 -0.8868 27 6 9.2715 -6.5393 0.1253 28 1 -0.4851 0.8401 -0.0004 29 1 3.6440 -3.4314 -0.8893 30 1 3.6433 -3.4318 0.8907 31 1 5.4290 -5.2435 0.0000 32 1 7.9333 -4.2894 0.8910 33 1 7.9340 -4.2881 -0.8890 34 1 6.3833 -7.1555 -1.4410 35 1 7.6826 -6.1687 -2.1876 36 1 8.7470 -8.2332 -2.4376 37 1 7.7865 -8.9905 -1.1365 38 1 9.6035 -10.6317 -0.6886 39 1 10.5745 -9.9065 -1.9923 40 1 12.6345 -10.2739 -0.6613 41 1 11.6630 -10.9990 0.6421 42 1 11.3522 -12.2205 -2.1436 43 1 11.5281 -13.3149 0.7903 44 1 11.1320 -14.3049 -0.7143 45 1 13.3787 -13.6845 -1.7147 46 1 13.7754 -12.6944 -0.2100 47 1 9.8509 -5.7935 -0.4188 48 1 9.5678 -6.5600 1.1741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284351021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -63.694416 kcal Electronic energy + Delta-G solvation = -25685.818277 eV Core-core repulsion = 21867.013797 eV Total energy + Delta-G solvation = -3818.804479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62714 -39.39354 -38.35684 -37.66507 -34.91608 -32.92608 -32.45927 -31.91582 -30.16561 -29.24176 -26.55083 -25.63180 -24.57518 -23.35185 -22.83073 -21.03199 -20.89363 -20.45534 -19.57227 -17.93496 -17.51241 -17.05275 -16.48018 -16.28060 -15.87738 -15.58998 -15.44821 -15.06320 -14.91375 -14.58928 -14.18896 -14.03855 -13.84603 -13.45942 -13.36073 -13.16519 -13.09924 -12.81089 -12.60164 -12.49025 -12.07457 -12.01764 -11.84342 -11.72295 -11.68560 -11.33658 -11.28285 -11.19549 -11.02343 -10.80594 -10.63050 -10.37720 -10.18440 -9.87635 -9.58333 -9.10237 -9.05949 -9.00288 -8.52473 -6.94206 -6.30907 -4.02933 2.24346 2.46916 2.74827 2.93058 3.26736 3.30910 3.32231 3.49281 3.60252 3.87927 4.02166 4.17311 4.27141 4.31484 4.34847 4.45368 4.47206 4.65077 4.70321 4.73487 4.79140 4.83419 4.88833 4.96197 5.08320 5.09108 5.17689 5.19036 5.22086 5.27081 5.39259 5.40993 5.43491 5.48390 5.51146 5.60373 5.65443 5.66241 5.73516 5.78654 5.85423 5.89410 5.97645 6.44511 7.06204 7.53923 7.75727 7.92047 8.39265 8.43874 9.15355 10.78293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.044423 B = 0.001436 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.149672 B =19496.905789 C =19884.723166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.133 3.867 15 C -0.114 4.114 16 H 0.094 0.906 17 C -0.129 4.129 18 C 0.100 3.900 19 N -0.621 5.621 20 C 0.527 3.473 21 O -0.540 6.540 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.155 4.155 25 C -0.182 4.182 26 C -0.180 4.180 27 C 0.114 3.886 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.691 -27.005 -4.096 34.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.008 3.992 15 C -0.133 4.133 16 H 0.112 0.888 17 C -0.167 4.167 18 C -0.023 4.023 19 N -0.356 5.356 20 C 0.317 3.683 21 O -0.417 6.417 22 C -0.172 4.172 23 C -0.112 4.112 24 C -0.174 4.174 25 C -0.218 4.218 26 C -0.217 4.217 27 C -0.009 4.009 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.352 -25.233 -3.647 33.906 hybrid contribution -1.280 -0.751 -0.144 1.491 sum 21.072 -25.984 -3.791 33.669 Atomic orbital electron populations 1.69940 1.05923 1.27784 1.48036 1.24705 0.94439 0.98956 0.93135 0.86740 0.81906 0.83288 0.79943 1.19202 1.19917 1.15924 1.22315 0.88268 0.97541 1.58858 0.89391 1.84812 1.09285 1.00016 1.97428 1.23278 0.93955 1.04445 1.05808 1.20285 0.90612 0.82228 0.75231 1.90710 1.58783 1.42199 1.47570 1.45907 1.07194 1.08103 1.77878 1.21148 0.81963 0.93114 1.02940 1.22614 0.96226 0.95976 0.98496 0.88807 1.22780 1.00115 0.96422 0.97408 1.22090 0.88033 0.99007 0.93181 1.48532 1.26090 1.17743 1.43268 1.20460 0.79968 0.85572 0.82346 1.90727 1.38171 1.77428 1.35334 1.21639 1.01223 0.92966 1.01331 1.20932 0.97253 0.92914 1.00113 1.22342 1.03111 0.91620 1.00286 1.23061 1.00487 0.98737 0.99565 1.22968 0.91601 1.03560 1.03603 1.22146 0.94877 0.84131 0.99792 0.91928 0.88490 0.88446 0.76671 0.91070 0.91086 0.89414 0.89790 0.91052 0.91073 0.88764 0.88834 0.90755 0.90979 0.87715 0.88716 0.88885 0.88816 0.88690 0.90789 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.59 27.74 -169.99 -4.72 16.87 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 11 C 0.53 8.86 7.85 -10.98 -0.09 8.78 16 12 O -0.52 -10.81 15.86 5.56 0.09 -10.72 16 13 N -0.74 -8.18 5.50 -60.29 -0.33 -8.51 16 14 C 0.13 1.26 5.13 -4.04 -0.02 1.24 16 15 C -0.11 -0.74 3.05 -88.47 -0.27 -1.01 16 16 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.13 -0.64 6.37 -24.90 -0.16 -0.80 16 18 C 0.10 0.47 6.49 -3.06 -0.02 0.45 16 19 N -0.62 -4.68 3.33 -170.51 -0.57 -5.24 16 20 C 0.53 4.77 7.85 -10.98 -0.09 4.69 16 21 O -0.54 -7.09 16.24 5.56 0.09 -7.00 16 22 C -0.13 -0.73 4.85 -27.88 -0.14 -0.87 16 23 C -0.07 -0.48 4.78 -26.74 -0.13 -0.61 16 24 C -0.16 -0.79 5.74 -90.62 -0.52 -1.31 16 25 C -0.18 -0.90 10.18 -26.72 -0.27 -1.17 16 26 C -0.18 -0.92 10.25 -26.73 -0.27 -1.19 16 27 C 0.11 0.89 6.38 -2.53 -0.02 0.88 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 3.24 8.47 -40.82 -0.35 2.90 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.73 7.97 -51.93 -0.41 0.31 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.57 8.10 -51.93 -0.42 0.14 16 41 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 42 H 0.10 0.44 8.07 -51.93 -0.42 0.02 16 43 H 0.09 0.48 8.03 -51.93 -0.42 0.07 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 48 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 LS Contribution 409.24 15.07 6.17 6.17 Total: -1.00 -36.05 409.24 -10.36 -46.41 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.32 Total: -2.06 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.55 Total: -4.85 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.12 Total: -39.29 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.18 Total: -17.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.05 -10.36 -46.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284351021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.287 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds