Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47412 * 269.99827 * 3 2 1 5 5 H 1.48495 * 109.47103 * 29.99870 * 3 2 1 6 6 H 1.48498 * 109.46941 * 149.99770 * 3 2 1 7 7 C 1.38803 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99449 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.80991 * 99.99810 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47183 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99373 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99473 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46773 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.91541 * 57.44768 * 15 14 13 17 17 C 1.55153 * 111.00503 * 293.54458 * 15 14 13 18 18 C 1.54323 * 103.10236 * 206.33608 * 17 15 14 19 19 N 1.47486 * 107.03754 * 22.24109 * 18 17 15 20 20 C 1.34778 * 125.59413 * 181.00840 * 19 18 17 21 21 O 1.21283 * 119.99795 * 180.02562 * 20 19 18 22 22 C 1.50698 * 120.00167 * 0.02562 * 20 19 18 23 23 C 1.52995 * 109.47036 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.46609 * 179.97438 * 23 22 20 25 25 C 1.53004 * 117.49929 * 243.74281 * 24 23 22 26 26 C 1.53005 * 117.49769 * 175.08727 * 24 23 22 27 27 C 1.47428 * 108.75727 * 1.02624 * 19 18 17 28 28 H 0.96993 * 120.00048 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47613 * 60.00363 * 10 9 7 30 30 H 1.09005 * 109.47484 * 300.00078 * 10 9 7 31 31 H 0.96996 * 119.99861 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47735 * 60.00313 * 14 13 11 33 33 H 1.09001 * 109.47309 * 299.99500 * 14 13 11 34 34 H 1.09002 * 110.72030 * 324.78875 * 17 15 14 35 35 H 1.09003 * 110.72184 * 87.88526 * 17 15 14 36 36 H 1.09000 * 109.88693 * 141.69901 * 18 17 15 37 37 H 1.09005 * 109.88012 * 262.86516 * 18 17 15 38 38 H 1.09008 * 109.46920 * 300.00630 * 22 20 19 39 39 H 1.09000 * 109.46934 * 60.00192 * 22 20 19 40 40 H 1.08992 * 109.47363 * 299.99583 * 23 22 20 41 41 H 1.09000 * 109.47379 * 60.00126 * 23 22 20 42 42 H 1.08995 * 115.55623 * 29.41859 * 24 23 22 43 43 H 1.09005 * 117.49594 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.50023 * 145.02442 * 25 24 23 45 45 H 1.09002 * 117.50288 * 214.98282 * 26 24 23 46 46 H 1.09007 * 117.49901 * 359.97292 * 26 24 23 47 47 H 1.09000 * 110.36462 * 217.05803 * 27 19 18 48 48 H 1.08996 * 110.46287 * 94.77884 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7911 -5.5022 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5025 -8.6985 0.0009 16 1 4.1527 -8.5289 0.8592 17 6 4.3005 -8.6128 -1.3269 18 6 4.9269 -10.0178 -1.4499 19 7 4.1069 -10.9298 -0.6306 20 6 4.3338 -12.2470 -0.4574 21 8 3.5909 -12.9036 0.2411 22 6 5.5106 -12.9039 -1.1316 23 6 5.5385 -14.3911 -0.7737 24 6 6.7329 -15.0581 -1.4588 25 6 6.4368 -16.1390 -2.5005 26 6 7.0037 -16.5283 -1.1330 27 6 2.9985 -10.1630 -0.0330 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8009 -6.1834 0.0004 32 1 1.7215 -7.8751 -0.8889 33 1 1.7222 -7.8752 0.8910 34 1 3.6335 -8.4132 -2.1655 35 1 5.0758 -7.8493 -1.2623 36 1 4.9150 -10.3392 -2.4914 37 1 5.9508 -10.0012 -1.0765 38 1 5.4191 -12.7921 -2.2121 39 1 6.4330 -12.4312 -0.7943 40 1 5.6298 -14.5032 0.3066 41 1 4.6160 -14.8635 -1.1114 42 1 7.5950 -14.4142 -1.6328 43 1 5.3910 -16.3745 -2.6980 44 1 7.1042 -16.2063 -3.3596 45 1 8.0439 -16.8517 -1.0930 46 1 6.3312 -17.0203 -0.4302 47 1 2.7936 -10.5171 0.9772 48 1 2.1039 -10.2421 -0.6508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284351022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -63.937067 kcal Electronic energy + Delta-G solvation = -25650.561050 eV Core-core repulsion = 21831.746049 eV Total energy + Delta-G solvation = -3818.815001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57486 -39.29349 -38.30344 -37.62980 -34.82337 -32.88691 -32.44643 -31.83690 -30.11257 -29.13277 -26.50089 -25.50348 -24.51175 -23.33302 -22.82201 -20.95946 -20.84153 -20.36661 -19.52910 -17.90078 -17.47022 -17.05850 -16.30905 -16.19090 -15.94246 -15.51073 -15.38540 -15.04433 -14.81989 -14.37429 -14.22199 -14.05598 -13.88272 -13.49037 -13.23788 -13.08926 -12.97546 -12.60991 -12.58340 -12.43881 -12.05622 -11.89284 -11.81966 -11.67957 -11.65284 -11.29731 -11.14603 -11.07805 -11.04256 -10.79033 -10.77843 -10.36598 -10.15793 -9.83577 -9.45391 -9.09045 -9.06976 -8.94037 -8.25641 -6.52042 -6.23379 -3.94176 2.27122 2.50078 3.00374 3.06288 3.20892 3.26411 3.30084 3.32045 3.63474 3.91870 4.06136 4.18670 4.20095 4.31010 4.37834 4.45946 4.49286 4.67721 4.76165 4.81074 4.86404 4.89780 4.98041 5.11254 5.11870 5.15441 5.18763 5.21192 5.27887 5.42735 5.43912 5.45484 5.50055 5.52902 5.59459 5.61758 5.67320 5.74804 5.82357 5.86248 5.89989 5.91688 6.10675 6.54295 7.08603 7.57666 7.64923 7.78495 8.33325 8.57152 9.21961 10.84080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039752 B = 0.001409 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.191795 B =19870.824702 C =20342.007764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.113 4.113 16 H 0.093 0.907 17 C -0.130 4.130 18 C 0.100 3.900 19 N -0.622 5.622 20 C 0.527 3.473 21 O -0.540 6.540 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.155 4.155 25 C -0.182 4.182 26 C -0.180 4.180 27 C 0.114 3.886 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.370 -28.096 -4.555 33.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.133 4.133 16 H 0.111 0.889 17 C -0.168 4.168 18 C -0.022 4.022 19 N -0.357 5.357 20 C 0.316 3.684 21 O -0.417 6.417 22 C -0.172 4.172 23 C -0.112 4.112 24 C -0.173 4.173 25 C -0.219 4.219 26 C -0.217 4.217 27 C -0.009 4.009 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.800 -28.777 -4.168 32.627 hybrid contribution 2.550 1.457 -0.105 2.939 sum 17.350 -27.320 -4.273 32.645 Atomic orbital electron populations 1.70014 1.05965 1.27486 1.46800 1.24989 0.95013 0.99020 0.94505 0.86170 0.79413 0.81585 0.78347 1.20269 1.20736 1.19703 1.22866 0.94898 0.91663 1.59037 0.90931 1.85419 1.04889 0.96331 1.96719 1.23530 1.06597 0.95369 1.04906 1.20317 0.86514 0.86271 0.75141 1.90714 1.15376 1.85588 1.47337 1.45937 1.09919 1.05288 1.78154 1.21127 0.94725 0.80417 1.02915 1.22608 0.97598 0.94128 0.98918 0.88881 1.22759 1.00347 0.95684 0.98004 1.22171 0.95025 0.89582 0.95459 1.48648 1.29397 1.07945 1.49690 1.20456 0.86612 0.80120 0.81188 1.90728 1.48963 1.62370 1.39641 1.21634 0.96860 0.96818 1.01840 1.20931 0.96808 0.92557 1.00913 1.22345 1.00290 0.91533 1.03171 1.23072 1.02128 1.03682 0.92975 1.22977 1.02028 0.97576 0.99158 1.22140 0.89796 0.89171 0.99811 0.92159 0.89232 0.89223 0.76859 0.91159 0.91111 0.89767 0.89499 0.90985 0.91067 0.88782 0.88854 0.90752 0.90983 0.87730 0.88713 0.88892 0.88825 0.88686 0.89902 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 C 0.53 9.42 7.85 -10.98 -0.09 9.34 16 12 O -0.52 -11.42 15.86 5.56 0.09 -11.33 16 13 N -0.74 -8.75 5.41 -60.29 -0.33 -9.07 16 14 C 0.13 1.35 5.12 -4.04 -0.02 1.33 16 15 C -0.11 -0.78 3.11 -88.47 -0.27 -1.06 16 16 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 17 C -0.13 -0.70 6.11 -24.90 -0.15 -0.85 16 18 C 0.10 0.50 6.52 -2.81 -0.02 0.48 16 19 N -0.62 -4.86 3.34 -170.14 -0.57 -5.43 16 20 C 0.53 4.90 7.85 -10.99 -0.09 4.81 16 21 O -0.54 -7.22 16.24 5.55 0.09 -7.13 16 22 C -0.13 -0.76 4.85 -27.89 -0.14 -0.89 16 23 C -0.07 -0.49 4.79 -26.73 -0.13 -0.62 16 24 C -0.16 -0.81 5.73 -90.61 -0.52 -1.33 16 25 C -0.18 -0.92 10.18 -26.69 -0.27 -1.20 16 26 C -0.18 -0.94 10.25 -26.69 -0.27 -1.21 16 27 C 0.11 0.94 6.38 -2.52 -0.02 0.92 16 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 30 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 31 H 0.40 3.47 8.34 -40.82 -0.34 3.13 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 41 H 0.07 0.56 7.83 -51.93 -0.41 0.16 16 42 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 44 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 48 H 0.07 0.63 8.03 -51.93 -0.42 0.21 16 LS Contribution 411.78 15.07 6.21 6.21 Total: -1.00 -36.40 411.78 -10.87 -47.27 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.29 Total: -1.76 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.56 Total: -5.82 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.16 Total: -39.73 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.40 -10.87 -47.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284351022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.667 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds