Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47412 * 269.99827 * 3 2 1 5 5 H 1.48495 * 109.47103 * 29.99870 * 3 2 1 6 6 H 1.48498 * 109.46941 * 149.99770 * 3 2 1 7 7 C 1.38803 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99449 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.80991 * 99.99810 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47183 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99373 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99473 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46773 * 180.02562 * 14 13 11 16 16 H 1.09003 * 110.91541 * 57.44768 * 15 14 13 17 17 C 1.55153 * 111.00503 * 293.54458 * 15 14 13 18 18 C 1.54323 * 103.10236 * 206.33608 * 17 15 14 19 19 N 1.47486 * 107.03754 * 22.24109 * 18 17 15 20 20 C 1.34778 * 125.59413 * 181.00840 * 19 18 17 21 21 O 1.21283 * 119.99795 * 180.02562 * 20 19 18 22 22 C 1.50698 * 120.00167 * 0.02562 * 20 19 18 23 23 C 1.52995 * 109.47036 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.46609 * 179.97438 * 23 22 20 25 25 C 1.53004 * 117.49929 * 243.74281 * 24 23 22 26 26 C 1.53005 * 117.49769 * 175.08727 * 24 23 22 27 27 C 1.47428 * 108.75727 * 1.02624 * 19 18 17 28 28 H 0.96993 * 120.00048 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47613 * 60.00363 * 10 9 7 30 30 H 1.09005 * 109.47484 * 300.00078 * 10 9 7 31 31 H 0.96996 * 119.99861 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47735 * 60.00313 * 14 13 11 33 33 H 1.09001 * 109.47309 * 299.99500 * 14 13 11 34 34 H 1.09002 * 110.72030 * 324.78875 * 17 15 14 35 35 H 1.09003 * 110.72184 * 87.88526 * 17 15 14 36 36 H 1.09000 * 109.88693 * 141.69901 * 18 17 15 37 37 H 1.09005 * 109.88012 * 262.86516 * 18 17 15 38 38 H 1.09008 * 109.46920 * 300.00630 * 22 20 19 39 39 H 1.09000 * 109.46934 * 60.00192 * 22 20 19 40 40 H 1.08992 * 109.47363 * 299.99583 * 23 22 20 41 41 H 1.09000 * 109.47379 * 60.00126 * 23 22 20 42 42 H 1.08995 * 115.55623 * 29.41859 * 24 23 22 43 43 H 1.09005 * 117.49594 * 0.02562 * 25 24 23 44 44 H 1.08996 * 117.50023 * 145.02442 * 25 24 23 45 45 H 1.09002 * 117.50288 * 214.98282 * 26 24 23 46 46 H 1.09007 * 117.49901 * 359.97292 * 26 24 23 47 47 H 1.09000 * 110.36462 * 217.05803 * 27 19 18 48 48 H 1.08996 * 110.46287 * 94.77884 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7911 -5.5022 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5025 -8.6985 0.0009 16 1 4.1527 -8.5289 0.8592 17 6 4.3005 -8.6128 -1.3269 18 6 4.9269 -10.0178 -1.4499 19 7 4.1069 -10.9298 -0.6306 20 6 4.3338 -12.2470 -0.4574 21 8 3.5909 -12.9036 0.2411 22 6 5.5106 -12.9039 -1.1316 23 6 5.5385 -14.3911 -0.7737 24 6 6.7329 -15.0581 -1.4588 25 6 6.4368 -16.1390 -2.5005 26 6 7.0037 -16.5283 -1.1330 27 6 2.9985 -10.1630 -0.0330 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8009 -6.1834 0.0004 32 1 1.7215 -7.8751 -0.8889 33 1 1.7222 -7.8752 0.8910 34 1 3.6335 -8.4132 -2.1655 35 1 5.0758 -7.8493 -1.2623 36 1 4.9150 -10.3392 -2.4914 37 1 5.9508 -10.0012 -1.0765 38 1 5.4191 -12.7921 -2.2121 39 1 6.4330 -12.4312 -0.7943 40 1 5.6298 -14.5032 0.3066 41 1 4.6160 -14.8635 -1.1114 42 1 7.5950 -14.4142 -1.6328 43 1 5.3910 -16.3745 -2.6980 44 1 7.1042 -16.2063 -3.3596 45 1 8.0439 -16.8517 -1.0930 46 1 6.3312 -17.0203 -0.4302 47 1 2.7936 -10.5171 0.9772 48 1 2.1039 -10.2421 -0.6508 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284351022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -87.938766 kcal Electronic energy + Delta-G solvation = -25651.601842 eV Core-core repulsion = 21831.746049 eV Total energy + Delta-G solvation = -3819.855793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26314 -40.54030 -38.96749 -38.20790 -35.90289 -34.56764 -33.56170 -32.62842 -31.00490 -30.15022 -27.73283 -27.17986 -25.24034 -23.85157 -23.20602 -21.79284 -21.52734 -21.27238 -20.13753 -19.80251 -18.12047 -17.88327 -17.68638 -16.93158 -16.85943 -16.68183 -16.46090 -16.28322 -15.89953 -15.60661 -15.00860 -14.80038 -14.69735 -14.59648 -14.39248 -14.06314 -13.99670 -13.65494 -13.41959 -13.14660 -13.05948 -12.96554 -12.86945 -12.61413 -12.45906 -12.29064 -12.24110 -12.13557 -11.93597 -11.71149 -11.67264 -11.23397 -11.12628 -10.98299 -10.86528 -10.75337 -10.24705 -10.10936 -9.69824 -8.64821 -8.33064 -6.10994 1.28693 1.43927 1.48794 1.58262 1.60312 1.64241 1.90855 2.28105 2.33487 2.91793 3.01434 3.30291 3.38257 3.51526 3.69753 3.78143 3.81561 4.03489 4.04462 4.08246 4.25444 4.26564 4.28846 4.34520 4.36447 4.40048 4.51367 4.54763 4.59768 4.68880 4.73171 4.78226 4.81587 4.89338 4.97572 5.04638 5.07149 5.07245 5.14490 5.21866 5.28309 5.33337 5.43409 5.44157 5.44710 6.21497 6.48141 6.53875 7.08525 7.11880 7.27875 8.76173 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039752 B = 0.001409 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.191795 B =19870.824702 C =20342.007764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.707 5.707 14 C 0.134 3.866 15 C -0.096 4.096 16 H 0.106 0.894 17 C -0.127 4.127 18 C 0.098 3.902 19 N -0.621 5.621 20 C 0.518 3.482 21 O -0.594 6.594 22 C -0.121 4.121 23 C -0.072 4.072 24 C -0.151 4.151 25 C -0.183 4.183 26 C -0.188 4.188 27 C 0.110 3.890 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.418 0.582 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.530 -27.714 -5.616 35.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.362 5.362 14 C 0.010 3.990 15 C -0.116 4.116 16 H 0.125 0.875 17 C -0.165 4.165 18 C -0.023 4.023 19 N -0.355 5.355 20 C 0.309 3.691 21 O -0.475 6.475 22 C -0.160 4.160 23 C -0.110 4.110 24 C -0.169 4.169 25 C -0.220 4.220 26 C -0.225 4.225 27 C -0.014 4.014 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.256 0.744 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.141 0.859 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.042 -28.409 -5.251 34.601 hybrid contribution 1.264 1.196 0.231 1.755 sum 20.306 -27.213 -5.020 34.323 Atomic orbital electron populations 1.70186 1.08035 1.28573 1.48113 1.26119 0.95911 1.03318 0.93753 0.84961 0.78229 0.76050 0.78792 1.19283 1.20505 1.18085 1.23215 0.95393 0.91959 1.58748 0.89744 1.85632 1.10820 0.99392 1.97061 1.23369 1.03430 0.94188 1.06990 1.20080 0.86196 0.86749 0.75091 1.90707 1.17641 1.86136 1.50188 1.45600 1.10346 1.04675 1.75531 1.21184 0.96045 0.79864 1.01956 1.22422 0.96429 0.91899 1.00828 0.87533 1.22806 1.00548 0.96810 0.96289 1.22414 0.95526 0.88351 0.96037 1.48758 1.29315 1.07950 1.49443 1.21160 0.86990 0.80326 0.80627 1.90703 1.50976 1.63659 1.42126 1.21647 0.96141 0.95644 1.02611 1.20850 0.96656 0.93565 0.99946 1.22344 1.00085 0.91609 1.02910 1.23122 1.02055 1.03493 0.93289 1.23046 1.02496 0.97774 0.99194 1.22075 0.90223 0.90222 0.98882 0.92052 0.87142 0.86833 0.74408 0.91970 0.92499 0.90362 0.87153 0.89345 0.88597 0.86700 0.86227 0.92498 0.93011 0.85913 0.89414 0.87672 0.87752 0.89567 0.91611 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.55 -30.53 9.50 67.96 0.65 -29.88 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.16 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 11 C 0.53 18.40 7.85 87.66 0.69 19.09 16 12 O -0.57 -25.65 15.86 -3.03 -0.05 -25.70 16 13 N -0.71 -15.15 5.41 -463.06 -2.50 -17.65 16 14 C 0.13 2.57 5.12 86.38 0.44 3.01 16 15 C -0.10 -1.12 3.11 -9.40 -0.03 -1.15 16 16 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 17 C -0.13 -0.89 6.11 31.78 0.19 -0.69 16 18 C 0.10 0.59 6.52 86.64 0.57 1.15 16 19 N -0.62 -8.65 3.34 -810.59 -2.71 -11.35 16 20 C 0.52 9.22 7.85 87.66 0.69 9.91 16 21 O -0.59 -16.54 16.24 -3.04 -0.05 -16.59 16 22 C -0.12 -1.13 4.85 29.85 0.14 -0.98 16 23 C -0.07 -0.92 4.79 30.59 0.15 -0.77 16 24 C -0.15 -1.33 5.73 -10.79 -0.06 -1.39 16 25 C -0.18 -1.62 10.18 30.62 0.31 -1.31 16 26 C -0.19 -1.78 10.25 30.62 0.31 -1.47 16 27 C 0.11 1.75 6.38 86.86 0.55 2.31 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.42 5.65 8.34 -92.71 -0.77 4.88 16 32 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 0.70 8.01 -2.39 -0.02 0.68 16 35 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 41 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 42 H 0.12 0.66 8.08 -2.39 -0.02 0.64 16 43 H 0.09 0.89 8.03 -2.38 -0.02 0.87 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 48 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -84.06 411.78 1.52 -82.54 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.17 Total: 14.28 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.51 Total: -5.30 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -4.92 Total: -84.40 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.10 Total: -42.28 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.06 1.52 -82.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284351022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.397 kcal (2) G-P(sol) polarization free energy of solvation -84.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds