Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86806 * 119.99926 * 2 1 4 4 H 1.48501 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47377 * 300.00337 * 3 2 1 6 6 H 1.48504 * 109.46867 * 60.00170 * 3 2 1 7 7 C 1.38797 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00175 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00219 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.46834 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00681 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00125 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00838 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47478 * 184.99985 * 14 13 11 16 16 H 1.09001 * 110.00080 * 306.32638 * 15 14 13 17 17 C 1.54312 * 109.77182 * 67.48586 * 15 14 13 18 18 C 1.55166 * 102.86133 * 141.88354 * 17 15 14 19 19 C 1.54905 * 101.58217 * 324.30343 * 18 17 15 20 20 N 1.47019 * 109.88137 * 185.23605 * 15 14 13 21 21 C 1.34776 * 125.65330 * 61.67875 * 20 15 14 22 22 O 1.21280 * 119.99695 * 354.79327 * 21 20 15 23 23 C 1.50698 * 120.00426 * 174.79445 * 21 20 15 24 24 C 1.53001 * 109.47198 * 179.97438 * 23 21 20 25 25 C 1.53003 * 109.47020 * 179.97438 * 24 23 21 26 26 C 1.52997 * 117.49811 * 243.74749 * 25 24 23 27 27 C 1.52999 * 117.49616 * 175.08433 * 25 24 23 28 28 H 0.96993 * 120.00188 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 59.99905 * 10 9 7 30 30 H 1.09002 * 109.46738 * 299.99711 * 10 9 7 31 31 H 0.97004 * 119.99414 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.46902 * 64.99552 * 14 13 11 33 33 H 1.09004 * 109.46934 * 305.00440 * 14 13 11 34 34 H 1.08995 * 110.92684 * 23.47302 * 17 15 14 35 35 H 1.08997 * 110.74307 * 260.20789 * 17 15 14 36 36 H 1.09003 * 111.00308 * 206.22684 * 18 17 15 37 37 H 1.08999 * 111.03478 * 82.39466 * 18 17 15 38 38 H 1.08998 * 110.36564 * 278.17159 * 19 18 17 39 39 H 1.09002 * 110.45833 * 155.89444 * 19 18 17 40 40 H 1.08998 * 109.47231 * 60.00003 * 23 21 20 41 41 H 1.08996 * 109.47087 * 299.99871 * 23 21 20 42 42 H 1.08996 * 109.47041 * 299.99954 * 24 23 21 43 43 H 1.08998 * 109.46982 * 59.99906 * 24 23 21 44 44 H 1.08992 * 115.54833 * 29.42110 * 25 24 23 45 45 H 1.08996 * 117.49926 * 0.02562 * 26 25 24 46 46 H 1.09002 * 117.49744 * 145.02718 * 26 25 24 47 47 H 1.08997 * 117.50329 * 214.98180 * 27 25 24 48 48 H 1.09001 * 117.50266 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3306 -7.7151 0.0009 15 6 3.4977 -8.6965 0.1258 16 1 4.2378 -8.4961 -0.6489 17 6 4.1445 -8.5635 1.5205 18 6 4.4924 -10.0320 1.8813 19 6 3.3003 -10.7971 1.2544 20 7 3.0058 -10.0765 0.0024 21 6 2.3926 -10.5982 -1.0785 22 8 2.1214 -9.8880 -2.0235 23 6 2.0438 -12.0638 -1.1128 24 6 1.3600 -12.3943 -2.4410 25 6 1.0065 -13.8826 -2.4761 26 6 1.6914 -14.7465 -3.5369 27 6 0.2092 -14.3910 -3.6789 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 3.8010 -6.1834 -0.0006 32 1 1.7954 -7.9035 -0.9299 33 1 1.6520 -7.8483 0.8435 34 1 3.4386 -8.1468 2.2389 35 1 5.0471 -7.9544 1.4709 36 1 4.5220 -10.1723 2.9619 37 1 5.4346 -10.3344 1.4243 38 1 2.4382 -10.7677 1.9207 39 1 3.5795 -11.8290 1.0416 40 1 1.3685 -12.2960 -0.2893 41 1 2.9535 -12.6561 -1.0148 42 1 0.4503 -11.8020 -2.5386 43 1 2.0349 -12.1621 -3.2648 44 1 0.8039 -14.3405 -1.5081 45 1 2.3942 -14.2548 -4.2095 46 1 1.9390 -15.7731 -3.2669 47 1 -0.5176 -15.1838 -3.5023 48 1 -0.0631 -13.6655 -4.4454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285181593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = -59.799887 kcal Electronic energy + Delta-G solvation = -26430.457656 eV Core-core repulsion = 22611.822057 eV Total energy + Delta-G solvation = -3818.635600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69167 -39.05627 -38.22094 -37.48624 -34.55904 -32.80511 -32.40416 -31.72178 -30.68658 -28.72427 -25.92678 -25.52774 -24.95007 -22.86947 -22.71349 -21.43499 -20.71012 -20.42396 -19.17840 -17.83116 -17.40019 -17.02923 -16.22791 -16.03843 -15.72818 -15.45914 -15.21040 -14.96916 -14.78262 -14.29836 -14.03249 -13.95008 -13.85171 -13.62105 -13.11599 -12.98554 -12.90200 -12.55991 -12.48877 -12.30446 -11.96542 -11.82247 -11.72071 -11.69410 -11.55636 -11.19499 -11.17048 -11.05016 -10.99253 -10.73854 -10.69198 -10.26570 -10.02874 -9.78260 -9.37525 -9.05350 -9.00629 -8.79403 -8.19333 -6.46717 -6.19172 -3.89381 2.35422 2.48998 3.13075 3.16890 3.23271 3.30724 3.36883 3.41349 3.80817 3.95800 4.09737 4.22710 4.26297 4.41516 4.43358 4.55363 4.56807 4.67343 4.80345 4.88457 4.90880 4.96167 5.08543 5.13793 5.15952 5.20241 5.27097 5.28342 5.37566 5.38472 5.48247 5.53048 5.59216 5.64519 5.71414 5.72802 5.75942 5.78402 5.89722 5.94514 6.01383 6.15928 6.17567 6.65206 7.17141 7.62293 7.74937 7.89596 8.37965 8.67837 9.26121 10.88350 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.001862 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.059764 B =15036.691125 C =16167.322706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.112 3.888 15 C 0.128 3.872 16 H 0.082 0.918 17 C -0.131 4.131 18 C -0.133 4.133 19 C 0.098 3.902 20 N -0.616 5.616 21 C 0.526 3.474 22 O -0.527 6.527 23 C -0.130 4.130 24 C -0.076 4.076 25 C -0.154 4.154 26 C -0.182 4.182 27 C -0.180 4.180 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -31.215 1.987 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.390 5.390 14 C -0.014 4.014 15 C 0.024 3.976 16 H 0.100 0.900 17 C -0.169 4.169 18 C -0.171 4.171 19 C -0.024 4.024 20 N -0.352 5.352 21 C 0.315 3.685 22 O -0.403 6.403 23 C -0.170 4.170 24 C -0.114 4.114 25 C -0.172 4.172 26 C -0.219 4.219 27 C -0.217 4.217 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.513 -31.113 1.387 32.286 hybrid contribution 2.452 1.278 0.106 2.767 sum 10.965 -29.835 1.494 31.821 Atomic orbital electron populations 1.70028 1.05953 1.27316 1.46989 1.24996 0.95023 0.99027 0.94583 0.86115 0.79572 0.81904 0.77880 1.19631 1.20578 1.20582 1.22915 0.94951 0.91670 1.58759 0.90875 1.85428 1.04982 0.96301 1.96698 1.23519 1.06528 0.95329 1.04899 1.20287 0.86508 0.86188 0.75211 1.90709 1.15402 1.85553 1.47366 1.45845 1.09808 1.05262 1.78117 1.21612 0.95686 0.80514 1.03547 1.21731 0.95576 0.81954 0.98304 0.90044 1.22789 1.01601 0.97166 0.95350 1.22781 0.97872 0.94909 1.01524 1.22381 0.98154 0.96476 0.85425 1.48521 1.59760 1.11690 1.15254 1.20517 0.76697 0.90360 0.80962 1.90763 1.52242 1.61939 1.35352 1.21631 1.02617 0.92177 1.00595 1.20949 1.01265 0.92969 0.96182 1.22336 1.05007 0.95267 0.94636 1.23068 0.95696 1.00500 1.02675 1.22983 0.94335 1.03611 1.00793 0.92254 0.89233 0.89210 0.77022 0.90190 0.91473 0.89741 0.89590 0.89511 0.90436 0.90947 0.90281 0.88851 0.88848 0.90533 0.90953 0.87758 0.88741 0.88975 0.88824 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 11 C 0.53 10.49 7.85 -10.99 -0.09 10.40 16 12 O -0.52 -12.49 15.86 5.55 0.09 -12.40 16 13 N -0.74 -10.52 5.37 -60.30 -0.32 -10.84 16 14 C 0.11 1.52 5.08 -4.05 -0.02 1.50 16 15 C 0.13 1.22 2.95 -66.96 -0.20 1.02 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.13 -0.87 6.23 -24.90 -0.16 -1.02 16 18 C -0.13 -0.60 7.08 -24.58 -0.17 -0.77 16 19 C 0.10 0.51 6.74 -2.53 -0.02 0.49 16 20 N -0.62 -5.43 3.07 -163.03 -0.50 -5.93 16 21 C 0.53 5.57 7.67 -10.99 -0.08 5.49 16 22 O -0.53 -7.98 14.77 5.56 0.08 -7.90 16 23 C -0.13 -0.88 4.59 -27.88 -0.13 -1.01 16 24 C -0.08 -0.61 4.79 -26.73 -0.13 -0.73 16 25 C -0.15 -0.98 5.73 -90.62 -0.52 -1.50 16 26 C -0.18 -1.09 10.18 -26.69 -0.27 -1.36 16 27 C -0.18 -1.16 10.26 -26.69 -0.27 -1.43 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.40 4.30 8.42 -40.82 -0.34 3.96 16 32 H 0.08 1.37 6.55 -51.93 -0.34 1.03 16 33 H 0.07 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.08 0.64 7.77 -51.93 -0.40 0.24 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.25 7.47 -51.93 -0.39 -0.13 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.45 7.95 -51.93 -0.41 0.04 16 42 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 44 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 45 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -37.69 407.88 -10.81 -48.50 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.16 Total: 0.53 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.64 Total: -5.02 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.09 Total: -42.57 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.17 Total: -20.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.69 -10.81 -48.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285181593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.304 kcal (2) G-P(sol) polarization free energy of solvation -37.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds