Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.46720 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99304 * 3 2 1 6 6 H 1.48493 * 109.47072 * 59.99749 * 3 2 1 7 7 C 1.38802 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99526 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00306 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47400 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00074 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00061 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99956 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46819 * 175.16263 * 14 13 11 16 16 N 1.46497 * 109.47388 * 305.34342 * 15 14 13 17 17 C 1.34770 * 120.00280 * 298.38828 * 16 15 14 18 18 O 1.21284 * 119.99765 * 5.05231 * 17 16 15 19 19 C 1.50701 * 120.00389 * 185.05844 * 17 16 15 20 20 C 1.53000 * 117.49457 * 248.61804 * 19 17 16 21 21 C 1.52998 * 60.00114 * 252.50962 * 20 19 17 22 22 C 1.52998 * 109.47118 * 65.34658 * 15 14 13 23 23 C 1.52995 * 109.47363 * 179.97438 * 22 15 14 24 24 C 1.52999 * 109.47161 * 300.00008 * 23 22 15 25 25 C 1.52998 * 109.46988 * 59.99763 * 24 23 22 26 26 C 1.52998 * 109.46637 * 185.34426 * 15 14 13 27 27 H 0.97001 * 120.00298 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47015 * 60.00168 * 10 9 7 29 29 H 1.09002 * 109.46765 * 300.00518 * 10 9 7 30 30 H 0.97000 * 119.99845 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46840 * 55.16689 * 14 13 11 32 32 H 1.08997 * 109.47307 * 295.16155 * 14 13 11 33 33 H 0.96999 * 119.99863 * 118.38251 * 16 15 14 34 34 H 1.08992 * 115.54923 * 34.32297 * 19 17 16 35 35 H 1.08994 * 117.50712 * 0.02562 * 20 19 17 36 36 H 1.09005 * 117.49629 * 145.02248 * 20 19 17 37 37 H 1.09007 * 117.49927 * 252.51569 * 21 20 19 38 38 H 1.08996 * 117.49721 * 107.49527 * 21 20 19 39 39 H 1.08999 * 109.47119 * 59.99123 * 22 15 14 40 40 H 1.09004 * 109.47319 * 299.99920 * 22 15 14 41 41 H 1.08999 * 109.47432 * 179.97438 * 23 22 15 42 42 H 1.09006 * 109.46615 * 59.99791 * 23 22 15 43 43 H 1.09000 * 109.47030 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47272 * 299.99709 * 24 23 22 45 45 H 1.08995 * 109.47458 * 60.00311 * 25 24 23 46 46 H 1.09004 * 109.47319 * 179.97438 * 25 24 23 47 47 H 1.08990 * 109.47292 * 60.00368 * 26 15 14 48 48 H 1.08997 * 109.47457 * 299.99985 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0013 11 6 1.9872 -5.3027 0.0018 12 8 0.7910 -5.5023 0.0019 13 7 2.8440 -6.3432 0.0009 14 6 2.3302 -7.7151 0.0019 15 6 3.4973 -8.6968 -0.1210 16 7 4.2921 -8.3647 -1.3060 17 6 3.7302 -8.4144 -2.5299 18 8 2.5449 -8.6442 -2.6441 19 6 4.5747 -8.1845 -3.7567 20 6 4.3263 -6.9033 -4.5554 21 6 3.8780 -8.2540 -5.1171 22 6 4.3776 -8.6013 1.1268 23 6 5.5443 -9.5834 1.0042 24 6 5.0006 -11.0073 0.8715 25 6 4.1203 -11.1028 -0.3763 26 6 2.9540 -10.1209 -0.2540 27 1 -0.4850 0.8400 -0.0004 28 1 3.1250 -3.7311 0.8908 29 1 3.1237 -3.7317 -0.8892 30 1 3.8008 -6.1836 0.0004 31 1 1.6520 -7.8497 -0.8408 32 1 1.7948 -7.9020 0.9327 33 1 5.2228 -8.1090 -1.2096 34 1 5.5998 -8.5499 -3.6970 35 1 3.5524 -6.2266 -4.1933 36 1 5.1882 -6.4256 -5.0212 37 1 4.4451 -8.6649 -5.9525 38 1 2.8089 -8.4660 -5.1249 39 1 3.7862 -8.8483 2.0084 40 1 4.7647 -7.5868 1.2216 41 1 6.1717 -9.5151 1.8929 42 1 6.1358 -9.3366 0.1225 43 1 5.8318 -11.7069 0.7837 44 1 4.4091 -11.2541 1.7531 45 1 4.7117 -10.8562 -1.2579 46 1 3.7333 -12.1174 -0.4711 47 1 2.3269 -10.1889 -1.1429 48 1 2.3626 -10.3680 0.6276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001286021910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = -65.988908 kcal Electronic energy + Delta-G solvation = -28183.038273 eV Core-core repulsion = 24364.134297 eV Total energy + Delta-G solvation = -3818.903976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12074 -39.04249 -38.45864 -36.18109 -34.79940 -33.42248 -32.41197 -31.22300 -30.93407 -29.06083 -25.71999 -25.28336 -24.84706 -23.13516 -22.62854 -21.50683 -20.53992 -20.17654 -19.40794 -17.87289 -17.79083 -16.45683 -16.35578 -15.87991 -15.38339 -15.13806 -15.00342 -14.79541 -14.73118 -14.63499 -14.12999 -13.88110 -13.85145 -13.12897 -12.98152 -12.85323 -12.74967 -12.62937 -12.47872 -12.39684 -12.08159 -11.75361 -11.62264 -11.47801 -11.06324 -11.00081 -10.98051 -10.85275 -10.78228 -10.74879 -10.64453 -10.49325 -9.79273 -9.74305 -9.36512 -9.19258 -9.06088 -8.71922 -8.19527 -6.47189 -6.19927 -3.90007 2.36076 2.82303 3.10439 3.19953 3.22374 3.29495 3.34955 3.65026 3.78601 4.21022 4.21926 4.32300 4.38877 4.48280 4.57297 4.66216 4.75434 4.83035 4.89068 4.98403 5.08077 5.13120 5.15069 5.20042 5.28981 5.38667 5.41300 5.51099 5.57698 5.59665 5.67007 5.70105 5.74898 5.76066 5.80134 5.87251 5.91571 5.93336 5.99483 6.06382 6.10552 6.15491 6.36159 6.71653 7.31820 7.61166 7.78849 8.10216 8.36910 8.71433 9.25249 10.87538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002777 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.212942 B =10079.383162 C =11014.396249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.110 3.890 15 C 0.174 3.826 16 N -0.718 5.718 17 C 0.547 3.453 18 O -0.526 6.526 19 C -0.198 4.198 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.268 0.732 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.392 0.608 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.642 -23.142 -2.668 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.390 6.390 13 N -0.386 5.386 14 C -0.015 4.015 15 C 0.088 3.912 16 N -0.371 5.371 17 C 0.334 3.666 18 O -0.402 6.402 19 C -0.219 4.219 20 C -0.189 4.189 21 C -0.185 4.185 22 C -0.162 4.162 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.168 4.168 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.226 0.774 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.594 -23.562 -2.736 27.340 hybrid contribution 3.039 1.494 0.134 3.389 sum 16.633 -22.069 -2.602 27.757 Atomic orbital electron populations 1.70030 1.05944 1.27310 1.46959 1.24996 0.95020 0.99014 0.94604 0.86121 0.79558 0.81940 0.77892 1.19646 1.20573 1.20583 1.22906 0.94904 0.91715 1.58770 0.90958 1.85437 1.04940 0.96223 1.96672 1.23511 1.06473 0.95612 1.04626 1.20260 0.86575 0.86188 0.75381 1.90707 1.15367 1.85551 1.47378 1.45850 1.09492 1.05405 1.77876 1.21748 0.95854 0.80467 1.03446 1.20571 0.91067 0.94762 0.84782 1.45976 1.14894 1.70703 1.05512 1.19599 0.87584 0.75815 0.83612 1.90683 1.15490 1.47617 1.86394 1.22208 1.00803 1.06745 0.92147 1.22972 1.03933 0.90432 1.01565 1.22932 1.02131 0.99879 0.93534 1.21869 0.97184 1.00177 0.96973 1.21530 0.97253 0.94916 1.01882 1.21558 0.99271 0.96483 0.98463 1.21442 0.96715 0.98923 0.97999 1.21870 0.98434 0.92364 1.04098 0.92251 0.89436 0.89521 0.77417 0.89036 0.91446 0.76621 0.86189 0.87860 0.87816 0.88110 0.87355 0.89818 0.91007 0.91546 0.92028 0.92121 0.91830 0.92081 0.91998 0.89440 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 11 C 0.53 10.39 7.85 -10.99 -0.09 10.31 16 12 O -0.52 -12.45 15.86 5.56 0.09 -12.36 16 13 N -0.73 -10.28 5.14 -60.29 -0.31 -10.59 16 14 C 0.11 1.45 4.30 -4.04 -0.02 1.43 16 15 C 0.17 1.55 0.32 -131.82 -0.04 1.51 16 16 N -0.72 -5.77 3.51 -47.61 -0.17 -5.94 16 17 C 0.55 5.86 7.02 -10.99 -0.08 5.78 16 18 O -0.53 -7.78 12.56 5.55 0.07 -7.71 16 19 C -0.20 -1.65 6.19 -91.77 -0.57 -2.22 16 20 C -0.15 -1.35 10.23 -26.73 -0.27 -1.62 16 21 C -0.15 -1.29 10.04 -26.73 -0.27 -1.56 16 22 C -0.12 -0.84 4.65 -26.73 -0.12 -0.97 16 23 C -0.12 -0.63 5.75 -26.73 -0.15 -0.78 16 24 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 25 C -0.11 -0.80 5.76 -26.75 -0.15 -0.96 16 26 C -0.13 -1.16 4.49 -26.75 -0.12 -1.28 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 30 H 0.39 4.31 7.27 -40.82 -0.30 4.02 16 31 H 0.09 1.54 6.29 -51.93 -0.33 1.21 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 2.21 7.38 -40.82 -0.30 1.91 16 34 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.47 7.10 -51.93 -0.37 0.10 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.29 6.90 -51.93 -0.36 -0.07 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.45 7.61 -51.93 -0.39 0.06 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 1.02 6.23 -51.93 -0.32 0.69 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -36.38 393.80 -10.32 -46.70 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.81 Total: 4.23 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.62 Total: -7.21 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.26 Total: -42.23 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.38 -10.32 -46.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286021910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.293 kcal (2) G-P(sol) polarization free energy of solvation -36.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds