Wall clock time and date at job start Sat Apr 11 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.46720 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46897 * 299.99304 * 3 2 1 6 6 H 1.48493 * 109.47072 * 59.99749 * 3 2 1 7 7 C 1.38802 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99526 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00306 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47400 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00074 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00061 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99956 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46819 * 175.16263 * 14 13 11 16 16 N 1.46497 * 109.47388 * 305.34342 * 15 14 13 17 17 C 1.34770 * 120.00280 * 298.38828 * 16 15 14 18 18 O 1.21284 * 119.99765 * 5.05231 * 17 16 15 19 19 C 1.50701 * 120.00389 * 185.05844 * 17 16 15 20 20 C 1.53000 * 117.49457 * 248.61804 * 19 17 16 21 21 C 1.52998 * 60.00114 * 252.50962 * 20 19 17 22 22 C 1.52998 * 109.47118 * 65.34658 * 15 14 13 23 23 C 1.52995 * 109.47363 * 179.97438 * 22 15 14 24 24 C 1.52999 * 109.47161 * 300.00008 * 23 22 15 25 25 C 1.52998 * 109.46988 * 59.99763 * 24 23 22 26 26 C 1.52998 * 109.46637 * 185.34426 * 15 14 13 27 27 H 0.97001 * 120.00298 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47015 * 60.00168 * 10 9 7 29 29 H 1.09002 * 109.46765 * 300.00518 * 10 9 7 30 30 H 0.97000 * 119.99845 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46840 * 55.16689 * 14 13 11 32 32 H 1.08997 * 109.47307 * 295.16155 * 14 13 11 33 33 H 0.96999 * 119.99863 * 118.38251 * 16 15 14 34 34 H 1.08992 * 115.54923 * 34.32297 * 19 17 16 35 35 H 1.08994 * 117.50712 * 0.02562 * 20 19 17 36 36 H 1.09005 * 117.49629 * 145.02248 * 20 19 17 37 37 H 1.09007 * 117.49927 * 252.51569 * 21 20 19 38 38 H 1.08996 * 117.49721 * 107.49527 * 21 20 19 39 39 H 1.08999 * 109.47119 * 59.99123 * 22 15 14 40 40 H 1.09004 * 109.47319 * 299.99920 * 22 15 14 41 41 H 1.08999 * 109.47432 * 179.97438 * 23 22 15 42 42 H 1.09006 * 109.46615 * 59.99791 * 23 22 15 43 43 H 1.09000 * 109.47030 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47272 * 299.99709 * 24 23 22 45 45 H 1.08995 * 109.47458 * 60.00311 * 25 24 23 46 46 H 1.09004 * 109.47319 * 179.97438 * 25 24 23 47 47 H 1.08990 * 109.47292 * 60.00368 * 26 15 14 48 48 H 1.08997 * 109.47457 * 299.99985 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0013 11 6 1.9872 -5.3027 0.0018 12 8 0.7910 -5.5023 0.0019 13 7 2.8440 -6.3432 0.0009 14 6 2.3302 -7.7151 0.0019 15 6 3.4973 -8.6968 -0.1210 16 7 4.2921 -8.3647 -1.3060 17 6 3.7302 -8.4144 -2.5299 18 8 2.5449 -8.6442 -2.6441 19 6 4.5747 -8.1845 -3.7567 20 6 4.3263 -6.9033 -4.5554 21 6 3.8780 -8.2540 -5.1171 22 6 4.3776 -8.6013 1.1268 23 6 5.5443 -9.5834 1.0042 24 6 5.0006 -11.0073 0.8715 25 6 4.1203 -11.1028 -0.3763 26 6 2.9540 -10.1209 -0.2540 27 1 -0.4850 0.8400 -0.0004 28 1 3.1250 -3.7311 0.8908 29 1 3.1237 -3.7317 -0.8892 30 1 3.8008 -6.1836 0.0004 31 1 1.6520 -7.8497 -0.8408 32 1 1.7948 -7.9020 0.9327 33 1 5.2228 -8.1090 -1.2096 34 1 5.5998 -8.5499 -3.6970 35 1 3.5524 -6.2266 -4.1933 36 1 5.1882 -6.4256 -5.0212 37 1 4.4451 -8.6649 -5.9525 38 1 2.8089 -8.4660 -5.1249 39 1 3.7862 -8.8483 2.0084 40 1 4.7647 -7.5868 1.2216 41 1 6.1717 -9.5151 1.8929 42 1 6.1358 -9.3366 0.1225 43 1 5.8318 -11.7069 0.7837 44 1 4.4091 -11.2541 1.7531 45 1 4.7117 -10.8562 -1.2579 46 1 3.7333 -12.1174 -0.4711 47 1 2.3269 -10.1889 -1.1429 48 1 2.3626 -10.3680 0.6276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001286021910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:56 Heat of formation + Delta-G solvation = -90.940211 kcal Electronic energy + Delta-G solvation = -28184.120242 eV Core-core repulsion = 24364.134297 eV Total energy + Delta-G solvation = -3819.985946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98103 -40.42706 -39.36598 -36.93799 -35.92311 -34.59527 -34.43741 -32.09298 -31.77445 -30.42982 -27.72367 -26.49659 -25.63760 -23.76864 -23.32705 -22.24776 -21.72027 -21.18309 -20.18768 -19.84966 -18.55077 -17.95954 -17.45010 -16.95013 -16.88885 -16.52574 -16.05743 -16.00098 -15.84116 -15.59041 -15.30313 -14.88898 -14.69690 -14.58708 -14.43243 -14.11525 -13.58293 -13.45655 -13.37392 -13.28770 -13.17078 -13.03788 -12.91844 -12.73217 -12.59355 -12.46704 -12.04942 -11.72800 -11.53800 -11.49207 -11.42815 -11.28619 -11.16574 -11.15471 -10.99936 -10.63508 -10.28055 -10.08533 -10.05200 -8.68679 -8.35106 -6.13979 1.25421 1.41576 1.46214 1.52310 1.57529 1.59446 2.05773 2.26212 2.31126 2.93873 2.99125 3.31180 3.50166 3.58463 3.78640 3.80698 3.90821 3.95581 3.96808 4.14379 4.20392 4.26042 4.28854 4.35247 4.45383 4.51539 4.53574 4.55648 4.70529 4.74211 4.81880 4.86844 4.91421 5.04017 5.06223 5.15767 5.21022 5.21425 5.24344 5.31645 5.37288 5.41271 5.42724 5.51095 5.61398 6.19468 6.45928 6.61240 7.05854 7.22364 7.32384 8.74528 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.002777 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.212942 B =10079.383162 C =11014.396249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.701 5.701 14 C 0.111 3.889 15 C 0.185 3.815 16 N -0.702 5.702 17 C 0.538 3.462 18 O -0.575 6.575 19 C -0.188 4.188 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.107 4.107 26 C -0.128 4.128 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.412 0.588 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.160 0.840 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.500 -23.414 -2.248 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.072 5.928 10 C -0.276 4.276 11 C 0.316 3.684 12 O -0.448 6.448 13 N -0.355 5.355 14 C -0.014 4.014 15 C 0.098 3.902 16 N -0.355 5.355 17 C 0.326 3.674 18 O -0.454 6.454 19 C -0.208 4.208 20 C -0.191 4.191 21 C -0.191 4.191 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.145 4.145 26 C -0.167 4.167 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.177 0.823 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.550 -23.865 -2.302 30.314 hybrid contribution 1.488 1.438 -0.009 2.069 sum 20.037 -22.427 -2.311 30.163 Atomic orbital electron populations 1.70202 1.08084 1.28560 1.48080 1.26177 0.95978 1.03452 0.93724 0.84869 0.78677 0.76119 0.78040 1.17757 1.20006 1.19930 1.23226 0.95357 0.91777 1.58779 0.89738 1.85688 1.10677 0.99420 1.97040 1.23328 1.03493 0.94053 1.06722 1.20165 0.86244 0.86845 0.75181 1.90696 1.17720 1.86156 1.50226 1.45524 1.09897 1.04702 1.75369 1.21786 0.97443 0.80565 1.01590 1.20447 0.90163 0.93194 0.86386 1.45847 1.15546 1.69654 1.04496 1.20169 0.87243 0.75019 0.85002 1.90690 1.17814 1.49741 1.87140 1.22333 1.01944 1.06074 0.90480 1.22953 1.04002 0.90127 1.02024 1.22958 1.00956 1.00170 0.95050 1.21878 0.97347 1.01445 0.95158 1.21526 0.96526 0.93745 1.03247 1.21550 0.99303 0.97312 0.97350 1.21397 0.95964 0.98090 0.99001 1.21823 0.99092 0.93106 1.02637 0.92015 0.86859 0.87500 0.75057 0.92922 0.91841 0.74491 0.82268 0.91198 0.85064 0.85287 0.90452 0.89893 0.90054 0.90099 0.90665 0.90791 0.91924 0.92027 0.92017 0.92657 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.31 9.50 67.95 0.65 -30.67 16 8 H 0.08 4.49 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 10 C -0.12 -5.09 6.16 71.23 0.44 -4.66 16 11 C 0.53 21.02 7.85 87.66 0.69 21.70 16 12 O -0.57 -28.85 15.86 -3.03 -0.05 -28.89 16 13 N -0.70 -19.24 5.14 -463.06 -2.38 -21.62 16 14 C 0.11 3.00 4.30 86.38 0.37 3.37 16 15 C 0.18 3.10 0.32 3.60 0.00 3.10 16 16 N -0.70 -9.99 3.51 -422.93 -1.49 -11.48 16 17 C 0.54 11.29 7.02 87.66 0.62 11.90 16 18 O -0.57 -18.09 12.56 -3.04 -0.04 -18.13 16 19 C -0.19 -2.76 6.19 -11.54 -0.07 -2.83 16 20 C -0.15 -2.56 10.23 30.59 0.31 -2.25 16 21 C -0.15 -2.59 10.04 30.59 0.31 -2.28 16 22 C -0.12 -1.29 4.65 30.59 0.14 -1.14 16 23 C -0.11 -0.75 5.75 30.59 0.18 -0.57 16 24 C -0.12 -0.99 5.92 30.59 0.18 -0.81 16 25 C -0.11 -1.34 5.76 30.58 0.18 -1.16 16 26 C -0.13 -2.30 4.49 30.58 0.14 -2.16 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.41 8.02 7.27 -92.71 -0.67 7.35 16 31 H 0.05 1.91 6.29 -2.39 -0.02 1.89 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.42 3.04 7.38 -92.71 -0.68 2.36 16 34 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.08 1.80 7.67 -2.39 -0.02 1.78 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.75 7.10 -2.38 -0.02 0.73 16 41 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.33 6.90 -2.38 -0.02 0.31 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.77 7.61 -2.39 -0.02 0.75 16 46 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.05 1.38 6.23 -2.39 -0.01 1.37 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -85.66 393.80 1.41 -84.26 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.38 Total: 24.07 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 4.59 Total: -7.34 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -3.58 Total: -89.69 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.09 Total: -47.02 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -85.66 1.41 -84.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001286021910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.683 kcal (2) G-P(sol) polarization free energy of solvation -85.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds