Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47157 * 240.00399 * 3 2 1 5 5 H 1.48496 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46802 * 120.00663 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.47021 * 125.65024 * 359.41182 * 13 11 10 15 15 C 1.54337 * 107.26261 * 178.85492 * 14 13 11 16 16 C 1.55155 * 103.02070 * 338.14065 * 15 14 13 17 17 H 1.08998 * 111.00779 * 277.23178 * 16 15 14 18 18 N 1.46504 * 111.03569 * 153.40104 * 16 15 14 19 19 C 1.34775 * 120.00134 * 161.33032 * 18 16 15 20 20 O 1.21284 * 119.99909 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99959 * 179.97438 * 19 18 16 22 22 C 1.52996 * 109.47092 * 180.02562 * 21 19 18 23 23 C 1.53006 * 109.47196 * 180.02562 * 22 21 19 24 24 C 1.53002 * 109.47164 * 180.02562 * 23 22 21 25 25 C 1.53004 * 117.49669 * 243.61784 * 24 23 22 26 26 C 1.53002 * 117.49693 * 174.99688 * 24 23 22 27 27 C 1.47426 * 125.64505 * 179.72939 * 13 11 10 28 28 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 1.08996 * 109.88140 * 298.39855 * 14 13 11 32 32 H 1.09001 * 109.87951 * 59.56582 * 14 13 11 33 33 H 1.09005 * 110.84402 * 219.67330 * 15 14 13 34 34 H 1.08996 * 110.51583 * 96.45968 * 15 14 13 35 35 H 0.97002 * 119.99710 * 341.33212 * 18 16 15 36 36 H 1.09001 * 109.47836 * 300.00740 * 21 19 18 37 37 H 1.09006 * 109.46573 * 60.00307 * 21 19 18 38 38 H 1.09004 * 109.46999 * 300.00148 * 22 21 19 39 39 H 1.08997 * 109.47173 * 60.00368 * 22 21 19 40 40 H 1.09004 * 109.46585 * 299.99565 * 23 22 21 41 41 H 1.08997 * 109.47441 * 59.99696 * 23 22 21 42 42 H 1.08995 * 115.55076 * 29.32097 * 24 23 22 43 43 H 1.09006 * 117.49374 * 0.02562 * 25 24 23 44 44 H 1.08992 * 117.49803 * 145.01675 * 25 24 23 45 45 H 1.08997 * 117.49487 * 214.97085 * 26 24 23 46 46 H 1.08996 * 117.50103 * 359.97319 * 26 24 23 47 47 H 1.09003 * 110.36374 * 322.92215 * 27 13 11 48 48 H 1.09000 * 110.37185 * 85.13705 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 4.3112 -6.2451 -0.0044 15 6 4.8665 -7.6846 0.0343 16 6 3.6851 -8.4993 0.6239 17 1 3.6713 -8.4360 1.7119 18 7 3.7371 -9.8954 0.1827 19 6 3.0521 -10.8409 0.8559 20 8 2.3922 -10.5359 1.8268 21 6 3.1052 -12.2768 0.4017 22 6 2.2468 -13.1376 1.3307 23 6 2.3011 -14.5956 0.8699 24 6 1.4421 -15.4563 1.7985 25 6 2.1523 -16.5335 2.6209 26 6 1.2710 -16.9328 1.4356 27 6 2.4656 -7.7679 0.0095 28 1 -0.4851 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1238 -3.7309 -0.8925 31 1 4.6445 -5.7413 -0.9117 32 1 4.6503 -5.6951 0.8735 33 1 5.7397 -7.7461 0.6839 34 1 5.1080 -8.0280 -0.9716 35 1 4.2646 -10.1392 -0.5940 36 1 2.7237 -12.3502 -0.6167 37 1 4.1365 -12.6287 0.4296 38 1 2.6280 -13.0643 2.3493 39 1 1.2156 -12.7855 1.3024 40 1 1.9201 -14.6691 -0.1487 41 1 3.3323 -14.9475 0.8984 42 1 0.5938 -14.9494 2.2582 43 1 3.2315 -16.6286 2.5007 44 1 1.7712 -16.7353 3.6219 45 1 0.3102 -17.3973 1.6570 46 1 1.7700 -17.2908 0.5352 47 1 1.5804 -7.9223 0.6265 48 1 2.2843 -8.1171 -1.0070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295003579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -88.100446 kcal Electronic energy + Delta-G solvation = -25817.652341 eV Core-core repulsion = 21997.789537 eV Total energy + Delta-G solvation = -3819.862804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41112 -40.52467 -38.71000 -38.37354 -35.39088 -34.71475 -34.59197 -32.29349 -30.88417 -29.69073 -28.32515 -27.63266 -24.78897 -23.51322 -23.15975 -22.06886 -21.39537 -21.24033 -20.72703 -19.63506 -18.23762 -18.10492 -17.62013 -16.95056 -16.88597 -16.68174 -16.42100 -16.29455 -15.74055 -15.50468 -15.34490 -14.92810 -14.70505 -14.52653 -14.38709 -14.17628 -13.88421 -13.50600 -13.28500 -13.17211 -13.03730 -12.86242 -12.77935 -12.64824 -12.63453 -12.54708 -12.35450 -11.94418 -11.87379 -11.76944 -11.74642 -11.14635 -11.13075 -11.08181 -10.85407 -10.70089 -10.30123 -10.24327 -9.75313 -8.70312 -8.34796 -6.14644 1.19814 1.42542 1.44511 1.49641 1.54352 1.64286 1.89490 2.26754 2.32103 2.93990 2.99357 3.19152 3.39481 3.52433 3.69642 3.80809 3.87988 3.97062 4.05643 4.07497 4.15697 4.21383 4.21867 4.27968 4.33131 4.41771 4.43831 4.59463 4.71468 4.74255 4.79320 4.81211 4.83396 4.89494 4.92471 4.96839 5.09192 5.11740 5.21389 5.26671 5.29077 5.36963 5.40653 5.46643 5.53239 6.18947 6.30812 6.56561 7.04369 7.05885 7.29232 8.74402 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.001532 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.869612 B =18268.907829 C =18868.947829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.116 4.116 11 C 0.543 3.457 12 O -0.571 6.571 13 N -0.617 5.617 14 C 0.088 3.912 15 C -0.114 4.114 16 C 0.141 3.859 17 H 0.083 0.917 18 N -0.705 5.705 19 C 0.505 3.495 20 O -0.589 6.589 21 C -0.130 4.130 22 C -0.101 4.101 23 C -0.080 4.080 24 C -0.168 4.168 25 C -0.185 4.185 26 C -0.180 4.180 27 C 0.095 3.905 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.424 0.576 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.040 0.960 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 -31.993 -2.407 36.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.267 4.267 11 C 0.332 3.668 12 O -0.450 6.450 13 N -0.352 5.352 14 C -0.033 4.033 15 C -0.152 4.152 16 C 0.034 3.966 17 H 0.101 0.899 18 N -0.358 5.358 19 C 0.294 3.706 20 O -0.469 6.469 21 C -0.169 4.169 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.186 4.186 25 C -0.221 4.221 26 C -0.217 4.217 27 C -0.029 4.029 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.263 0.737 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.059 0.941 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.533 -31.933 -1.726 35.553 hybrid contribution 0.942 1.354 0.042 1.650 sum 16.475 -30.579 -1.684 34.776 Atomic orbital electron populations 1.70192 1.08097 1.28717 1.47885 1.26167 0.95956 1.03410 0.93605 0.84970 0.77770 0.75446 0.79596 1.18404 1.20465 1.18604 1.23161 0.95385 0.91687 1.59139 0.89662 1.85677 1.10714 0.99503 1.97071 1.23283 1.03376 0.93386 1.06704 1.19921 0.85425 0.86205 0.75273 1.90696 1.17414 1.85822 1.51027 1.48332 1.08380 1.05093 1.73402 1.22442 0.77228 0.99655 1.04016 1.22926 0.96853 0.90895 1.04518 1.21824 0.94190 0.81322 0.99261 0.89909 1.45747 1.50972 1.05724 1.33359 1.21597 0.77465 0.89433 0.82154 1.90751 1.42866 1.83762 1.29519 1.21727 1.04629 0.88319 1.02247 1.21267 0.99409 0.94410 0.98860 1.21138 0.99723 0.92413 0.98405 1.22408 1.02060 0.91124 1.03042 1.23110 0.99286 1.03546 0.96206 1.23032 1.01739 0.97004 0.99880 1.22608 0.98857 0.80286 1.01153 0.91986 0.87354 0.86933 0.88940 0.90077 0.86295 0.86794 0.73720 0.86275 0.85528 0.92921 0.93558 0.90486 0.90243 0.89202 0.87920 0.89230 0.88938 0.87780 0.94086 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.83 13.22 21.65 0.29 -56.55 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.16 -8.98 20.57 -56.49 -1.16 -10.15 16 10 C -0.12 -4.82 5.35 71.24 0.38 -4.44 16 11 C 0.54 22.12 7.87 87.66 0.69 22.81 16 12 O -0.57 -29.29 16.12 -3.04 -0.05 -29.34 16 13 N -0.62 -17.77 3.33 -811.77 -2.70 -20.47 16 14 C 0.09 1.48 6.49 86.73 0.56 2.05 16 15 C -0.11 -1.00 6.57 31.79 0.21 -0.79 16 16 C 0.14 2.36 3.32 46.38 0.15 2.51 16 17 H 0.08 1.82 7.73 -2.39 -0.02 1.80 16 18 N -0.70 -7.97 5.23 -435.97 -2.28 -10.25 16 19 C 0.50 8.54 7.83 87.66 0.69 9.22 16 20 O -0.59 -17.07 15.73 -3.04 -0.05 -17.12 16 21 C -0.13 -1.06 5.70 29.85 0.17 -0.89 16 22 C -0.10 -1.33 4.46 30.59 0.14 -1.20 16 23 C -0.08 -0.71 5.50 30.60 0.17 -0.54 16 24 C -0.17 -1.99 5.74 -10.79 -0.06 -2.05 16 25 C -0.18 -1.92 10.18 30.60 0.31 -1.61 16 26 C -0.18 -1.76 10.25 30.60 0.31 -1.44 16 27 C 0.10 2.48 6.60 86.85 0.57 3.05 16 28 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 29 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 30 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.11 0.39 8.00 -2.39 -0.02 0.37 16 35 H 0.42 1.15 8.52 -92.71 -0.79 0.36 16 36 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.05 0.88 8.10 -2.38 -0.02 0.87 16 39 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 40 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.08 0.48 7.88 -2.39 -0.02 0.46 16 42 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 43 H 0.10 0.86 8.03 -2.38 -0.02 0.84 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.04 1.42 8.04 -2.39 -0.02 1.40 16 48 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -89.58 412.19 1.63 -87.95 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.15 Total: 13.18 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 5.41 Total: -2.92 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -4.69 Total: -87.26 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.10 Total: -46.46 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.15 kcal Total: -89.58 1.63 -87.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295003579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -89.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds