Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00302 * 2 1 4 4 H 1.48502 * 109.47302 * 270.00185 * 3 2 1 5 5 H 1.48509 * 109.46732 * 29.99857 * 3 2 1 6 6 H 1.48494 * 109.47364 * 149.99764 * 3 2 1 7 7 C 1.38803 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99607 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00188 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00002 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47189 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99653 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00063 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.63123 * 359.97438 * 13 11 10 15 15 C 1.53186 * 108.77704 * 126.41367 * 14 13 11 16 16 C 1.53040 * 109.31543 * 54.63373 * 15 14 13 17 17 C 1.53042 * 109.53766 * 298.63953 * 16 15 14 18 18 H 1.09008 * 109.49375 * 301.37780 * 17 16 15 19 19 C 1.52997 * 109.50045 * 181.31553 * 17 16 15 20 20 N 1.46499 * 109.47555 * 174.99872 * 19 17 16 21 21 C 1.34777 * 120.00199 * 180.02562 * 20 19 17 22 22 O 1.21283 * 119.99750 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.99928 * 180.27479 * 21 20 19 24 24 C 1.53782 * 113.61231 * 277.21964 * 23 21 20 25 25 C 1.53783 * 87.08057 * 220.02148 * 24 23 21 26 26 C 1.53780 * 87.08189 * 25.43154 * 25 24 23 27 27 C 1.46921 * 120.63148 * 180.02562 * 13 11 10 28 28 H 0.96992 * 119.99759 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47115 * 60.00568 * 10 9 7 30 30 H 1.09004 * 109.47685 * 300.00344 * 10 9 7 31 31 H 1.09004 * 109.58743 * 6.62487 * 14 13 11 32 32 H 1.09000 * 109.58363 * 246.20030 * 14 13 11 33 33 H 1.09001 * 109.50083 * 294.68139 * 15 14 13 34 34 H 1.08996 * 109.52751 * 174.60115 * 15 14 13 35 35 H 1.08999 * 109.46533 * 178.61560 * 16 15 14 36 36 H 1.09001 * 109.44838 * 58.64492 * 16 15 14 37 37 H 1.08998 * 109.47382 * 54.99433 * 19 17 16 38 38 H 1.09002 * 109.47216 * 294.99870 * 19 17 16 39 39 H 0.97000 * 119.99484 * 359.97438 * 20 19 17 40 40 H 1.08997 * 112.84664 * 48.52304 * 23 21 20 41 41 H 1.09002 * 113.61515 * 334.56488 * 24 23 21 42 42 H 1.08999 * 113.61482 * 105.47097 * 24 23 21 43 43 H 1.09008 * 113.61020 * 270.88528 * 25 24 23 44 44 H 1.08998 * 113.61482 * 139.98424 * 25 24 23 45 45 H 1.08999 * 113.61557 * 220.02482 * 26 25 24 46 46 H 1.08997 * 113.61498 * 89.11355 * 26 25 24 47 47 H 1.08995 * 109.59060 * 113.79798 * 27 13 11 48 48 H 1.09004 * 109.58673 * 353.37016 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 0.0002 12 8 6.3441 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 5.1242 -5.6392 0.0000 15 6 5.4852 -6.5630 -1.1673 16 6 6.9637 -6.9465 -1.0709 17 6 7.8266 -5.6863 -1.1675 18 1 7.6239 -5.1779 -2.1102 19 6 9.3054 -6.0738 -1.1039 20 7 10.1319 -4.8830 -1.3158 21 6 11.4758 -4.9844 -1.3027 22 8 12.0008 -6.0614 -1.1150 23 6 12.3260 -3.7582 -1.5146 24 6 12.5230 -3.3936 -2.9955 25 6 13.9799 -3.0560 -2.6372 26 6 13.8369 -4.0401 -1.4643 27 6 7.4921 -4.7525 0.0006 28 1 -0.4849 0.8400 -0.0004 29 1 3.6434 -3.4318 -0.8897 30 1 3.6440 -3.4315 0.8904 31 1 4.1005 -5.2840 -0.1181 32 1 5.2182 -6.1838 0.9396 33 1 5.3042 -6.0462 -2.1098 34 1 4.8723 -7.4632 -1.1226 35 1 7.2172 -7.6236 -1.8866 36 1 7.1488 -7.4412 -0.1175 37 1 9.5219 -6.8090 -1.8789 38 1 9.5274 -6.5008 -0.1259 39 1 9.7119 -4.0217 -1.4663 40 1 12.0178 -2.9171 -0.8937 41 1 12.4253 -4.2434 -3.6711 42 1 11.9400 -2.5293 -3.3137 43 1 14.1241 -2.0218 -2.3243 44 1 14.7001 -3.3757 -3.3903 45 1 14.3146 -3.6978 -0.5463 46 1 14.0983 -5.0666 -1.7213 47 1 7.7787 -5.2250 0.9401 48 1 8.0309 -3.8123 -0.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295230742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = -68.546215 kcal Electronic energy + Delta-G solvation = -27068.354464 eV Core-core repulsion = 23249.339595 eV Total energy + Delta-G solvation = -3819.014869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66777 -40.06735 -38.10593 -37.37448 -35.28460 -33.05471 -32.47028 -31.64190 -29.61541 -27.67553 -26.01500 -25.72921 -25.49056 -25.20377 -22.51422 -21.21238 -20.86739 -19.62516 -19.22619 -17.87987 -17.56884 -16.87003 -16.37855 -16.18934 -15.80731 -15.46373 -15.14468 -14.96496 -14.81217 -14.62940 -14.19055 -13.88261 -13.52901 -13.40381 -13.33889 -13.16308 -12.91660 -12.82553 -12.79357 -12.43446 -12.12772 -12.07867 -11.57108 -11.44435 -11.30523 -11.20424 -11.05241 -11.03560 -10.91643 -10.88761 -10.76522 -10.61788 -9.92994 -9.89168 -9.53685 -9.36267 -9.03727 -8.66987 -8.53215 -6.95956 -6.32107 -4.04207 2.36134 2.65054 2.85717 2.90331 3.13883 3.30087 3.47320 3.54749 4.13199 4.21688 4.29340 4.31054 4.33989 4.39006 4.44193 4.47050 4.65732 4.71970 4.79320 4.91705 5.02850 5.06908 5.08866 5.19934 5.23401 5.29413 5.30926 5.37073 5.40384 5.43086 5.51289 5.55858 5.57428 5.59517 5.67793 5.71878 5.72763 5.76222 5.81691 5.94304 6.01847 6.04221 6.16403 6.47140 7.20971 7.38935 7.90876 7.95735 8.36163 8.38220 9.13996 10.77081 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002408 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.409890 B =11626.399235 C =13434.545531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.520 6.520 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.135 4.135 16 C -0.110 4.110 17 C -0.115 4.115 18 H 0.083 0.917 19 C 0.127 3.873 20 N -0.730 5.730 21 C 0.524 3.476 22 O -0.544 6.544 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.118 4.118 27 C 0.118 3.882 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.491 -13.769 -4.152 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.395 6.395 13 N -0.354 5.354 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.135 4.135 18 H 0.102 0.898 19 C 0.003 3.997 20 N -0.382 5.382 21 C 0.310 3.690 22 O -0.421 6.421 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.156 4.156 27 C -0.005 4.005 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 22.813 -13.052 -3.999 26.585 hybrid contribution -1.256 0.009 -0.055 1.257 sum 21.557 -13.043 -4.054 25.520 Atomic orbital electron populations 1.69934 1.05905 1.27790 1.47984 1.24717 0.94459 0.98975 0.93178 0.86733 0.81897 0.83286 0.79919 1.19217 1.19933 1.15930 1.22299 0.88194 0.97522 1.58861 0.89397 1.84782 1.09377 1.00078 1.97413 1.23312 0.94057 1.04251 1.05583 1.20319 0.90690 0.81792 0.74977 1.90677 1.58750 1.41703 1.48379 1.48053 1.06317 1.05780 1.75207 1.21784 0.94285 0.87221 0.98557 1.21915 0.96253 0.99832 0.99302 1.21479 0.94495 0.96164 1.02694 1.21820 0.93691 0.97656 1.00352 0.89821 1.21353 0.88489 0.87711 1.02163 1.46119 1.06288 1.12167 1.73590 1.20550 0.82233 0.90613 0.75589 1.90682 1.72998 1.29452 1.48953 1.22837 0.96576 0.96949 0.99910 1.22827 0.97520 1.01970 0.93885 1.22837 0.96636 0.99883 0.98623 1.22803 0.92823 1.00866 0.99063 1.21560 0.81538 1.00076 0.97295 0.91919 0.88539 0.88510 0.89003 0.91272 0.91135 0.90285 0.91255 0.91303 0.91136 0.91187 0.76070 0.86727 0.89745 0.90437 0.89753 0.90972 0.90993 0.88774 0.91558 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.48 27.74 -169.99 -4.71 16.76 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.29 4.50 36.01 0.16 -2.13 16 11 C 0.53 9.20 7.72 -10.98 -0.08 9.11 16 12 O -0.52 -10.68 15.27 5.56 0.08 -10.60 16 13 N -0.62 -7.74 2.97 -172.74 -0.51 -8.26 16 14 C 0.10 1.00 6.34 -3.71 -0.02 0.98 16 15 C -0.13 -1.02 6.08 -26.61 -0.16 -1.19 16 16 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 17 C -0.12 -0.93 2.37 -90.48 -0.21 -1.15 16 18 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 19 C 0.13 1.05 5.07 -4.04 -0.02 1.03 16 20 N -0.73 -6.29 5.33 -60.29 -0.32 -6.61 16 21 C 0.52 5.35 7.35 -10.98 -0.08 5.27 16 22 O -0.54 -7.48 15.90 5.55 0.09 -7.39 16 23 C -0.14 -1.10 4.15 -90.96 -0.38 -1.48 16 24 C -0.12 -0.83 7.63 -25.92 -0.20 -1.03 16 25 C -0.14 -0.87 8.08 -25.92 -0.21 -1.08 16 26 C -0.12 -0.90 7.41 -25.92 -0.19 -1.09 16 27 C 0.12 1.24 5.52 -3.69 -0.02 1.21 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.10 1.69 7.69 -51.91 -0.40 1.29 16 30 H 0.10 1.71 7.94 -51.91 -0.41 1.30 16 31 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.40 3.07 7.71 -40.82 -0.31 2.76 16 40 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.86 7.43 -51.93 -0.39 0.47 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.08 6.22 -51.93 -0.32 0.76 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -34.72 394.97 -10.05 -44.77 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.06 Total: 0.55 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.34 Total: -4.21 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.06 Total: -40.30 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.72 -10.05 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295230742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.776 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds