Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00302 * 2 1 4 4 H 1.48502 * 109.47302 * 270.00185 * 3 2 1 5 5 H 1.48509 * 109.46732 * 29.99857 * 3 2 1 6 6 H 1.48494 * 109.47364 * 149.99764 * 3 2 1 7 7 C 1.38803 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99607 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00188 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00002 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47189 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99653 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00063 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.63123 * 359.97438 * 13 11 10 15 15 C 1.53186 * 108.77704 * 126.41367 * 14 13 11 16 16 C 1.53040 * 109.31543 * 54.63373 * 15 14 13 17 17 C 1.53042 * 109.53766 * 298.63953 * 16 15 14 18 18 H 1.09008 * 109.49375 * 301.37780 * 17 16 15 19 19 C 1.52997 * 109.50045 * 181.31553 * 17 16 15 20 20 N 1.46499 * 109.47555 * 174.99872 * 19 17 16 21 21 C 1.34777 * 120.00199 * 180.02562 * 20 19 17 22 22 O 1.21283 * 119.99750 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.99928 * 180.27479 * 21 20 19 24 24 C 1.53782 * 113.61231 * 277.21964 * 23 21 20 25 25 C 1.53783 * 87.08057 * 220.02148 * 24 23 21 26 26 C 1.53780 * 87.08189 * 25.43154 * 25 24 23 27 27 C 1.46921 * 120.63148 * 180.02562 * 13 11 10 28 28 H 0.96992 * 119.99759 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47115 * 60.00568 * 10 9 7 30 30 H 1.09004 * 109.47685 * 300.00344 * 10 9 7 31 31 H 1.09004 * 109.58743 * 6.62487 * 14 13 11 32 32 H 1.09000 * 109.58363 * 246.20030 * 14 13 11 33 33 H 1.09001 * 109.50083 * 294.68139 * 15 14 13 34 34 H 1.08996 * 109.52751 * 174.60115 * 15 14 13 35 35 H 1.08999 * 109.46533 * 178.61560 * 16 15 14 36 36 H 1.09001 * 109.44838 * 58.64492 * 16 15 14 37 37 H 1.08998 * 109.47382 * 54.99433 * 19 17 16 38 38 H 1.09002 * 109.47216 * 294.99870 * 19 17 16 39 39 H 0.97000 * 119.99484 * 359.97438 * 20 19 17 40 40 H 1.08997 * 112.84664 * 48.52304 * 23 21 20 41 41 H 1.09002 * 113.61515 * 334.56488 * 24 23 21 42 42 H 1.08999 * 113.61482 * 105.47097 * 24 23 21 43 43 H 1.09008 * 113.61020 * 270.88528 * 25 24 23 44 44 H 1.08998 * 113.61482 * 139.98424 * 25 24 23 45 45 H 1.08999 * 113.61557 * 220.02482 * 26 25 24 46 46 H 1.08997 * 113.61498 * 89.11355 * 26 25 24 47 47 H 1.08995 * 109.59060 * 113.79798 * 27 13 11 48 48 H 1.09004 * 109.58673 * 353.37016 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 0.0002 12 8 6.3441 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 5.1242 -5.6392 0.0000 15 6 5.4852 -6.5630 -1.1673 16 6 6.9637 -6.9465 -1.0709 17 6 7.8266 -5.6863 -1.1675 18 1 7.6239 -5.1779 -2.1102 19 6 9.3054 -6.0738 -1.1039 20 7 10.1319 -4.8830 -1.3158 21 6 11.4758 -4.9844 -1.3027 22 8 12.0008 -6.0614 -1.1150 23 6 12.3260 -3.7582 -1.5146 24 6 12.5230 -3.3936 -2.9955 25 6 13.9799 -3.0560 -2.6372 26 6 13.8369 -4.0401 -1.4643 27 6 7.4921 -4.7525 0.0006 28 1 -0.4849 0.8400 -0.0004 29 1 3.6434 -3.4318 -0.8897 30 1 3.6440 -3.4315 0.8904 31 1 4.1005 -5.2840 -0.1181 32 1 5.2182 -6.1838 0.9396 33 1 5.3042 -6.0462 -2.1098 34 1 4.8723 -7.4632 -1.1226 35 1 7.2172 -7.6236 -1.8866 36 1 7.1488 -7.4412 -0.1175 37 1 9.5219 -6.8090 -1.8789 38 1 9.5274 -6.5008 -0.1259 39 1 9.7119 -4.0217 -1.4663 40 1 12.0178 -2.9171 -0.8937 41 1 12.4253 -4.2434 -3.6711 42 1 11.9400 -2.5293 -3.3137 43 1 14.1241 -2.0218 -2.3243 44 1 14.7001 -3.3757 -3.3903 45 1 14.3146 -3.6978 -0.5463 46 1 14.0983 -5.0666 -1.7213 47 1 7.7787 -5.2250 0.9401 48 1 8.0309 -3.8123 -0.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295230742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = -90.858024 kcal Electronic energy + Delta-G solvation = -27069.321977 eV Core-core repulsion = 23249.339595 eV Total energy + Delta-G solvation = -3819.982382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49727 -41.05191 -38.98190 -38.22832 -36.17081 -34.67342 -33.98091 -32.44799 -30.94587 -28.40255 -27.86470 -26.58436 -26.21899 -26.16993 -23.24423 -21.99583 -21.67112 -20.44532 -20.23965 -19.50682 -18.50482 -18.11053 -17.25568 -17.11590 -17.03994 -16.65384 -16.52334 -16.02134 -15.74804 -15.49888 -15.34676 -15.03618 -14.91312 -14.54133 -14.23279 -14.15563 -13.93996 -13.65547 -13.51227 -13.41403 -13.33832 -13.09772 -13.01571 -12.89842 -12.57168 -12.19003 -12.13104 -11.90581 -11.86489 -11.77684 -11.58595 -11.45836 -11.31198 -11.17083 -10.91775 -10.70386 -10.51842 -10.13352 -9.70686 -9.00025 -8.51481 -6.22410 0.97606 1.31372 1.45986 1.50847 1.54244 1.57960 2.05321 2.20961 2.24929 2.68057 2.86766 3.48543 3.53227 3.62716 3.65077 3.73040 3.77196 3.89695 3.91220 4.04772 4.13578 4.18552 4.23654 4.31370 4.40604 4.50973 4.59799 4.66620 4.67265 4.74186 4.77138 4.81517 4.84931 4.89304 5.01131 5.01830 5.07088 5.12329 5.16783 5.19315 5.38210 5.43291 5.51278 5.51866 5.70732 6.11431 6.23851 6.48097 6.93653 7.06877 7.19543 8.60792 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002408 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.409890 B =11626.399235 C =13434.545531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.107 4.107 11 C 0.534 3.466 12 O -0.561 6.561 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.100 4.100 18 H 0.077 0.923 19 C 0.131 3.869 20 N -0.724 5.724 21 C 0.520 3.480 22 O -0.584 6.584 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.124 4.124 27 C 0.115 3.885 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.410 0.590 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.605 -14.435 -4.372 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.257 4.257 11 C 0.322 3.678 12 O -0.439 6.439 13 N -0.338 5.338 14 C -0.027 4.027 15 C -0.167 4.167 16 C -0.146 4.146 17 C -0.120 4.120 18 H 0.096 0.904 19 C 0.007 3.993 20 N -0.375 5.375 21 C 0.308 3.692 22 O -0.464 6.464 23 C -0.164 4.164 24 C -0.159 4.159 25 C -0.171 4.171 26 C -0.161 4.161 27 C -0.007 4.007 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.246 0.754 40 H 0.147 0.853 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.906 -13.757 -4.225 27.903 hybrid contribution -1.597 0.014 0.027 1.597 sum 22.309 -13.743 -4.198 26.537 Atomic orbital electron populations 1.70013 1.07288 1.29010 1.49119 1.25570 0.95284 1.02270 0.92929 0.85867 0.80691 0.79592 0.80224 1.18649 1.18457 1.16014 1.22445 0.90209 0.96660 1.58236 0.91956 1.84682 1.06467 1.06104 1.97555 1.23283 0.96072 0.99479 1.06908 1.19988 0.89464 0.83015 0.75359 1.90662 1.59135 1.43294 1.50846 1.48050 1.07819 1.04925 1.72962 1.22104 0.93362 0.86553 1.00707 1.21892 0.97101 1.00032 0.97668 1.21503 0.93533 0.95550 1.03994 1.21680 0.93754 0.97755 0.98818 0.90447 1.21333 0.88362 0.87569 1.02056 1.46139 1.06034 1.12642 1.72682 1.20991 0.82689 0.90787 0.74754 1.90660 1.73724 1.31048 1.50999 1.22951 0.96122 0.96277 1.01044 1.22820 0.98178 1.02052 0.92862 1.22831 0.96288 1.00108 0.97852 1.22798 0.92928 1.00322 1.00097 1.21730 0.79836 1.00101 0.99017 0.91384 0.87163 0.87243 0.89562 0.89148 0.92126 0.87999 0.89818 0.90138 0.91047 0.91408 0.75375 0.85269 0.90557 0.89289 0.88411 0.90457 0.90457 0.90682 0.90235 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 13.97 21.65 0.30 -54.87 16 2 C 0.04 2.60 5.50 84.86 0.47 3.07 16 3 Si 0.91 44.36 27.74 68.60 1.90 46.26 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 7 C -0.53 -30.25 10.04 67.96 0.68 -29.57 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.66 18.55 -56.49 -1.05 -9.71 16 10 C -0.11 -3.93 4.50 71.24 0.32 -3.61 16 11 C 0.53 17.85 7.72 87.66 0.68 18.53 16 12 O -0.56 -22.83 15.27 -3.03 -0.05 -22.87 16 13 N -0.60 -14.00 2.97 -818.82 -2.43 -16.43 16 14 C 0.09 1.56 6.34 86.36 0.55 2.10 16 15 C -0.13 -1.55 6.08 30.67 0.19 -1.36 16 16 C -0.11 -1.13 5.17 30.62 0.16 -0.97 16 17 C -0.10 -1.40 2.37 -10.70 -0.03 -1.43 16 18 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 19 C 0.13 1.96 5.07 86.38 0.44 2.39 16 20 N -0.72 -11.76 5.33 -463.06 -2.47 -14.23 16 21 C 0.52 10.37 7.35 87.66 0.64 11.02 16 22 O -0.58 -16.13 15.90 -3.04 -0.05 -16.18 16 23 C -0.14 -2.09 4.15 -11.01 -0.05 -2.13 16 24 C -0.12 -1.47 7.63 31.12 0.24 -1.23 16 25 C -0.13 -1.43 8.08 31.12 0.25 -1.18 16 26 C -0.12 -1.82 7.41 31.12 0.23 -1.59 16 27 C 0.12 2.20 5.52 86.38 0.48 2.67 16 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 3.75 7.69 -2.39 -0.02 3.73 16 30 H 0.11 3.75 7.94 -2.39 -0.02 3.73 16 31 H 0.09 1.54 5.93 -2.38 -0.01 1.53 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.41 5.80 7.71 -92.71 -0.71 5.09 16 40 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.81 8.14 -2.38 -0.02 0.80 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.40 7.43 -2.39 -0.02 1.38 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.73 6.22 -2.39 -0.01 1.72 16 Total: -1.00 -76.10 394.97 1.61 -74.49 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.20 Total: 16.83 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.25 Total: -3.30 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.60 Total: -85.52 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.09 Total: -39.05 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.05 Total: -9.71 kcal Total: -76.10 1.61 -74.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295230742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.365 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds