Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62856 * 359.71632 * 13 11 10 15 15 C 1.52761 * 109.00629 * 233.58929 * 14 13 11 16 16 C 1.53045 * 109.38221 * 305.58631 * 15 14 13 17 17 C 1.53036 * 109.53562 * 61.24591 * 16 15 14 18 18 H 1.09000 * 109.50258 * 58.58362 * 17 16 15 19 19 C 1.53002 * 109.49490 * 178.68468 * 17 16 15 20 20 N 1.46504 * 109.46783 * 184.83616 * 19 17 16 21 21 C 1.34779 * 119.99827 * 179.97438 * 20 19 17 22 22 O 1.21282 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99939 * 180.02562 * 21 20 19 24 24 C 1.53784 * 113.61447 * 277.49494 * 23 21 20 25 25 C 1.53781 * 87.08367 * 220.02036 * 24 23 21 26 26 C 1.53782 * 113.61336 * 180.02562 * 23 21 20 27 27 C 1.46924 * 120.63200 * 179.97438 * 13 11 10 28 28 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 30 30 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 31 31 H 1.09002 * 109.58533 * 353.42389 * 14 13 11 32 32 H 1.08996 * 109.58066 * 113.84691 * 14 13 11 33 33 H 1.09002 * 109.56255 * 185.55684 * 15 14 13 34 34 H 1.08991 * 109.36323 * 65.49887 * 15 14 13 35 35 H 1.08997 * 109.46206 * 301.22548 * 16 15 14 36 36 H 1.09006 * 109.44802 * 181.25778 * 16 15 14 37 37 H 1.09005 * 109.47197 * 304.83224 * 19 17 16 38 38 H 1.09001 * 109.47312 * 64.83741 * 19 17 16 39 39 H 0.96995 * 120.00571 * 359.97438 * 20 19 17 40 40 H 1.08999 * 112.85120 * 48.80595 * 23 21 20 41 41 H 1.08996 * 113.61705 * 334.57273 * 24 23 21 42 42 H 1.09007 * 113.60758 * 105.47169 * 24 23 21 43 43 H 1.08996 * 113.61425 * 270.89080 * 25 24 23 44 44 H 1.08999 * 113.61583 * 139.98224 * 25 24 23 45 45 H 1.08999 * 113.61489 * 254.53010 * 26 23 21 46 46 H 1.09004 * 113.61608 * 25.34888 * 26 23 21 47 47 H 1.08990 * 109.58875 * 246.15416 * 27 13 11 48 48 H 1.09007 * 109.58456 * 6.58164 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 5.1242 -5.6391 0.0057 15 6 5.4852 -6.5627 1.1678 16 6 6.9637 -6.9462 1.0715 17 6 7.8266 -5.6860 1.1678 18 1 7.6235 -5.1770 2.1101 19 6 9.3053 -6.0736 1.1044 20 7 10.1318 -4.8819 1.3122 21 6 11.4757 -4.9832 1.2984 22 8 12.0008 -6.0606 1.1135 23 6 12.3259 -3.7575 1.5128 24 6 12.5255 -2.9161 0.2411 25 6 13.9816 -2.7190 0.6947 26 6 13.8368 -4.0402 1.4674 27 6 7.4922 -4.7525 -0.0005 28 1 -0.4849 0.8400 0.0004 29 1 3.6440 -3.4314 0.8904 30 1 3.6433 -3.4317 -0.8896 31 1 4.1010 -5.2837 0.1275 32 1 5.2143 -6.1854 -0.9331 33 1 4.8722 -7.4628 1.1226 34 1 5.3041 -6.0455 2.1100 35 1 7.1491 -7.4412 0.1183 36 1 7.2170 -7.6230 1.8875 37 1 9.5225 -6.8064 1.8815 38 1 9.5267 -6.5034 0.1274 39 1 9.7119 -4.0201 1.4597 40 1 12.0164 -3.1740 2.3799 41 1 12.4292 -3.4890 -0.6811 42 1 11.9427 -1.9949 0.2312 43 1 14.1249 -1.8504 1.3375 44 1 14.7033 -2.7671 -0.1207 45 1 14.3131 -4.0269 2.4478 46 1 14.0988 -4.9212 0.8815 47 1 7.7788 -5.2251 -0.9398 48 1 8.0309 -3.8122 0.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295230744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = -68.515236 kcal Electronic energy + Delta-G solvation = -27130.709323 eV Core-core repulsion = 23311.695798 eV Total energy + Delta-G solvation = -3819.013526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66702 -40.07005 -38.10057 -37.37585 -35.28956 -33.05357 -32.46941 -31.66083 -29.61680 -27.67305 -25.99453 -25.72849 -25.48601 -25.20675 -22.51096 -21.20567 -20.87042 -19.60735 -19.22789 -17.88219 -17.56577 -16.86824 -16.35491 -16.21966 -15.79395 -15.43596 -15.18125 -14.96183 -14.74937 -14.64180 -14.21827 -13.91514 -13.56713 -13.39242 -13.24472 -13.12556 -13.00961 -12.80938 -12.80172 -12.34613 -12.17726 -12.08293 -11.54755 -11.44327 -11.30392 -11.20797 -11.04655 -11.03902 -10.90118 -10.88857 -10.74289 -10.61736 -9.92562 -9.89254 -9.53725 -9.36221 -9.03671 -8.67127 -8.53257 -6.95973 -6.32121 -4.04260 2.36460 2.64955 2.85639 2.90293 3.13847 3.30324 3.47078 3.54679 4.14332 4.23697 4.29289 4.31007 4.34227 4.40718 4.45534 4.46888 4.65901 4.72540 4.78628 4.92152 5.02706 5.06879 5.08949 5.19650 5.23667 5.29797 5.33640 5.37134 5.41652 5.44719 5.55332 5.55870 5.57540 5.60401 5.67845 5.72051 5.73520 5.76665 5.81817 5.94314 6.02619 6.04642 6.16701 6.47162 7.21039 7.38889 7.90876 7.95835 8.36134 8.38181 9.13977 10.77060 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002470 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.678394 B =11331.035585 C =13257.273967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.520 6.520 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.135 4.135 16 C -0.110 4.110 17 C -0.116 4.116 18 H 0.083 0.917 19 C 0.127 3.873 20 N -0.730 5.730 21 C 0.523 3.477 22 O -0.544 6.544 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.118 4.118 27 C 0.118 3.882 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.491 -13.523 2.938 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.395 6.395 13 N -0.353 5.353 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.135 4.135 18 H 0.102 0.898 19 C 0.003 3.997 20 N -0.382 5.382 21 C 0.310 3.690 22 O -0.421 6.421 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.155 4.155 27 C -0.005 4.005 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.812 -12.807 2.792 26.310 hybrid contribution -1.258 -0.012 0.112 1.263 sum 21.555 -12.819 2.904 25.246 Atomic orbital electron populations 1.69940 1.05900 1.27783 1.47998 1.24718 0.94462 0.98975 0.93179 0.86730 0.81866 0.83280 0.79936 1.19208 1.19941 1.15949 1.22299 0.88191 0.97523 1.58846 0.89395 1.84784 1.09382 1.00079 1.97413 1.23310 0.94061 1.04251 1.05584 1.20316 0.90688 0.81789 0.74978 1.90677 1.58744 1.41698 1.48372 1.48054 1.06310 1.05772 1.75211 1.21693 0.94286 0.87252 0.98611 1.21846 0.96283 0.99841 0.99363 1.21478 0.94484 0.96169 1.02699 1.21822 0.93704 0.97661 1.00358 0.89822 1.21355 0.88480 0.87693 1.02180 1.46120 1.06289 1.12053 1.73712 1.20555 0.82232 0.90480 0.75726 1.90681 1.72989 1.29311 1.49108 1.22829 0.96546 0.95640 1.01225 1.22834 0.97444 0.99718 0.96216 1.22828 0.96745 0.97992 1.00411 1.22797 0.92791 0.98544 1.01405 1.21560 0.81538 1.00083 0.97281 0.91923 0.88508 0.88539 0.89014 0.91304 0.90246 0.91149 0.91302 0.91247 0.91099 0.91219 0.76072 0.86872 0.89656 0.90314 0.89790 0.90946 0.91082 0.88759 0.91567 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.29 4.50 36.01 0.16 -2.12 16 11 C 0.53 9.18 7.72 -10.99 -0.08 9.10 16 12 O -0.52 -10.66 15.27 5.56 0.08 -10.57 16 13 N -0.62 -7.73 2.98 -173.00 -0.52 -8.25 16 14 C 0.10 1.00 6.31 -3.93 -0.02 0.98 16 15 C -0.14 -1.03 6.06 -26.83 -0.16 -1.19 16 16 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 17 C -0.12 -0.93 2.38 -90.48 -0.22 -1.15 16 18 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 19 C 0.13 1.05 5.07 -4.04 -0.02 1.03 16 20 N -0.73 -6.29 5.33 -60.29 -0.32 -6.61 16 21 C 0.52 5.35 7.35 -10.99 -0.08 5.27 16 22 O -0.54 -7.48 15.90 5.56 0.09 -7.39 16 23 C -0.14 -1.10 4.15 -90.96 -0.38 -1.48 16 24 C -0.12 -0.89 7.63 -25.92 -0.20 -1.09 16 25 C -0.14 -0.91 8.08 -25.94 -0.21 -1.12 16 26 C -0.12 -0.90 7.40 -25.94 -0.19 -1.09 16 27 C 0.12 1.23 5.52 -3.69 -0.02 1.21 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.10 1.69 7.68 -51.92 -0.40 1.29 16 30 H 0.10 1.70 7.95 -51.92 -0.41 1.29 16 31 H 0.09 0.92 5.93 -51.93 -0.31 0.62 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 3.08 7.70 -40.82 -0.31 2.76 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.68 8.09 -51.93 -0.42 0.25 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.86 7.43 -51.93 -0.39 0.48 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.08 6.21 -51.92 -0.32 0.76 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -34.68 394.91 -10.05 -44.73 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.06 Total: 0.67 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.35 Total: -4.32 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.06 Total: -40.29 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.68 -10.05 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295230744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.781 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds