Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48498 * 109.46932 * 150.00478 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.62856 * 359.71632 * 13 11 10 15 15 C 1.52761 * 109.00629 * 233.58929 * 14 13 11 16 16 C 1.53045 * 109.38221 * 305.58631 * 15 14 13 17 17 C 1.53036 * 109.53562 * 61.24591 * 16 15 14 18 18 H 1.09000 * 109.50258 * 58.58362 * 17 16 15 19 19 C 1.53002 * 109.49490 * 178.68468 * 17 16 15 20 20 N 1.46504 * 109.46783 * 184.83616 * 19 17 16 21 21 C 1.34779 * 119.99827 * 179.97438 * 20 19 17 22 22 O 1.21282 * 120.00205 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99939 * 180.02562 * 21 20 19 24 24 C 1.53784 * 113.61447 * 277.49494 * 23 21 20 25 25 C 1.53781 * 87.08367 * 220.02036 * 24 23 21 26 26 C 1.53782 * 113.61336 * 180.02562 * 23 21 20 27 27 C 1.46924 * 120.63200 * 179.97438 * 13 11 10 28 28 H 0.96996 * 119.99710 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 30 30 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 31 31 H 1.09002 * 109.58533 * 353.42389 * 14 13 11 32 32 H 1.08996 * 109.58066 * 113.84691 * 14 13 11 33 33 H 1.09002 * 109.56255 * 185.55684 * 15 14 13 34 34 H 1.08991 * 109.36323 * 65.49887 * 15 14 13 35 35 H 1.08997 * 109.46206 * 301.22548 * 16 15 14 36 36 H 1.09006 * 109.44802 * 181.25778 * 16 15 14 37 37 H 1.09005 * 109.47197 * 304.83224 * 19 17 16 38 38 H 1.09001 * 109.47312 * 64.83741 * 19 17 16 39 39 H 0.96995 * 120.00571 * 359.97438 * 20 19 17 40 40 H 1.08999 * 112.85120 * 48.80595 * 23 21 20 41 41 H 1.08996 * 113.61705 * 334.57273 * 24 23 21 42 42 H 1.09007 * 113.60758 * 105.47169 * 24 23 21 43 43 H 1.08996 * 113.61425 * 270.89080 * 25 24 23 44 44 H 1.08999 * 113.61583 * 139.98224 * 25 24 23 45 45 H 1.08999 * 113.61489 * 254.53010 * 26 23 21 46 46 H 1.09004 * 113.61608 * 25.34888 * 26 23 21 47 47 H 1.08990 * 109.58875 * 246.15416 * 27 13 11 48 48 H 1.09007 * 109.58456 * 6.58164 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4948 -0.0001 14 6 5.1242 -5.6391 0.0057 15 6 5.4852 -6.5627 1.1678 16 6 6.9637 -6.9462 1.0715 17 6 7.8266 -5.6860 1.1678 18 1 7.6235 -5.1770 2.1101 19 6 9.3053 -6.0736 1.1044 20 7 10.1318 -4.8819 1.3122 21 6 11.4757 -4.9832 1.2984 22 8 12.0008 -6.0606 1.1135 23 6 12.3259 -3.7575 1.5128 24 6 12.5255 -2.9161 0.2411 25 6 13.9816 -2.7190 0.6947 26 6 13.8368 -4.0402 1.4674 27 6 7.4922 -4.7525 -0.0005 28 1 -0.4849 0.8400 0.0004 29 1 3.6440 -3.4314 0.8904 30 1 3.6433 -3.4317 -0.8896 31 1 4.1010 -5.2837 0.1275 32 1 5.2143 -6.1854 -0.9331 33 1 4.8722 -7.4628 1.1226 34 1 5.3041 -6.0455 2.1100 35 1 7.1491 -7.4412 0.1183 36 1 7.2170 -7.6230 1.8875 37 1 9.5225 -6.8064 1.8815 38 1 9.5267 -6.5034 0.1274 39 1 9.7119 -4.0201 1.4597 40 1 12.0164 -3.1740 2.3799 41 1 12.4292 -3.4890 -0.6811 42 1 11.9427 -1.9949 0.2312 43 1 14.1249 -1.8504 1.3375 44 1 14.7033 -2.7671 -0.1207 45 1 14.3131 -4.0269 2.4478 46 1 14.0988 -4.9212 0.8815 47 1 7.7788 -5.2251 -0.9398 48 1 8.0309 -3.8122 0.1172 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295230744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = -90.796494 kcal Electronic energy + Delta-G solvation = -27131.675511 eV Core-core repulsion = 23311.695798 eV Total energy + Delta-G solvation = -3819.979714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50107 -41.05362 -38.98480 -38.23326 -36.17477 -34.67217 -33.98037 -32.46682 -30.94806 -28.40410 -27.86462 -26.58527 -26.22325 -26.16698 -23.24390 -21.99430 -21.67398 -20.46174 -20.21343 -19.51111 -18.51183 -18.10375 -17.25665 -17.11067 -17.04646 -16.67105 -16.49784 -16.05152 -15.71100 -15.46186 -15.35348 -15.09844 -14.91607 -14.54053 -14.22248 -14.18135 -13.85998 -13.73554 -13.50998 -13.41539 -13.34143 -13.04561 -13.00101 -12.94197 -12.58114 -12.16992 -12.14065 -11.90654 -11.86342 -11.77406 -11.58593 -11.45916 -11.30957 -11.17089 -10.91671 -10.70369 -10.51817 -10.13351 -9.70767 -8.99969 -8.51465 -6.22406 0.97595 1.31605 1.45771 1.51101 1.54175 1.58006 2.05290 2.20810 2.24941 2.68042 2.86810 3.48574 3.53208 3.63270 3.64593 3.72754 3.77594 3.89943 3.91281 4.05404 4.13210 4.18383 4.23651 4.31247 4.40731 4.50976 4.59612 4.65506 4.69091 4.73556 4.77319 4.81695 4.85026 4.89278 5.01221 5.01946 5.07171 5.12099 5.17049 5.19374 5.38246 5.43163 5.51349 5.51960 5.70769 6.11457 6.23887 6.48100 6.93686 7.06945 7.19572 8.60815 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002470 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.678394 B =11331.035585 C =13257.273967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.062 0.938 9 S -0.175 6.175 10 C -0.107 4.107 11 C 0.534 3.466 12 O -0.560 6.560 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.101 4.101 18 H 0.077 0.923 19 C 0.131 3.869 20 N -0.724 5.724 21 C 0.520 3.480 22 O -0.584 6.584 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.122 4.122 27 C 0.116 3.884 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.410 0.590 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.635 -14.210 3.277 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.675 4.675 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.257 4.257 11 C 0.322 3.678 12 O -0.439 6.439 13 N -0.338 5.338 14 C -0.027 4.027 15 C -0.167 4.167 16 C -0.146 4.146 17 C -0.120 4.120 18 H 0.096 0.904 19 C 0.007 3.993 20 N -0.375 5.375 21 C 0.308 3.692 22 O -0.464 6.464 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.007 4.007 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.150 0.850 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.936 -13.534 3.137 27.676 hybrid contribution -1.610 0.001 -0.013 1.611 sum 22.326 -13.533 3.124 26.293 Atomic orbital electron populations 1.70018 1.07291 1.29008 1.49133 1.25571 0.95284 1.02273 0.92927 0.85866 0.80719 0.79591 0.80193 1.18759 1.18417 1.15937 1.22445 0.90211 0.96658 1.58223 0.91961 1.84682 1.06464 1.06099 1.97554 1.23281 0.96080 0.99484 1.06903 1.19984 0.89460 0.83011 0.75362 1.90663 1.59124 1.43284 1.50829 1.48050 1.07810 1.04920 1.72973 1.22010 0.93362 0.86589 1.00756 1.21824 0.97132 1.00043 0.97733 1.21502 0.93522 0.95555 1.03998 1.21682 0.93770 0.97764 0.98826 0.90440 1.21336 0.88352 0.87551 1.02075 1.46140 1.06038 1.12529 1.72800 1.20994 0.82688 0.90644 0.74910 1.90660 1.73712 1.30911 1.51133 1.22944 0.96129 0.94855 1.02244 1.22828 0.98321 0.99654 0.95428 1.22825 0.96117 0.97684 1.00441 1.22782 0.92891 0.98515 1.01799 1.21727 0.79834 1.00105 0.98995 0.91387 0.87145 0.87273 0.89574 0.89188 0.87954 0.92139 0.90143 0.89802 0.90986 0.91456 0.75379 0.84960 0.90810 0.89559 0.88276 0.90605 0.90202 0.90768 0.90263 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 13.97 21.65 0.30 -54.88 16 2 C 0.04 2.60 5.50 84.86 0.47 3.07 16 3 Si 0.91 44.35 27.74 68.60 1.90 46.25 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.24 -11.35 6.74 99.48 0.67 -10.68 16 7 C -0.53 -30.24 10.04 67.95 0.68 -29.56 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.65 18.55 -56.49 -1.05 -9.70 16 10 C -0.11 -3.93 4.50 71.24 0.32 -3.61 16 11 C 0.53 17.84 7.72 87.66 0.68 18.52 16 12 O -0.56 -22.78 15.27 -3.04 -0.05 -22.82 16 13 N -0.60 -13.99 2.98 -819.64 -2.44 -16.43 16 14 C 0.09 1.56 6.31 86.22 0.54 2.10 16 15 C -0.13 -1.56 6.06 30.53 0.19 -1.37 16 16 C -0.11 -1.13 5.17 30.62 0.16 -0.97 16 17 C -0.10 -1.41 2.38 -10.70 -0.03 -1.43 16 18 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 19 C 0.13 1.96 5.07 86.38 0.44 2.39 16 20 N -0.72 -11.75 5.33 -463.04 -2.47 -14.22 16 21 C 0.52 10.35 7.35 87.66 0.64 10.99 16 22 O -0.58 -16.10 15.90 -3.04 -0.05 -16.15 16 23 C -0.14 -2.05 4.15 -11.01 -0.05 -2.09 16 24 C -0.12 -1.66 7.63 31.12 0.24 -1.43 16 25 C -0.13 -1.51 8.08 31.11 0.25 -1.26 16 26 C -0.12 -1.78 7.40 31.11 0.23 -1.55 16 27 C 0.12 2.20 5.52 86.38 0.48 2.68 16 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.11 3.76 7.68 -2.39 -0.02 3.74 16 30 H 0.11 3.74 7.95 -2.39 -0.02 3.72 16 31 H 0.09 1.54 5.93 -2.39 -0.01 1.53 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.41 5.80 7.70 -92.71 -0.71 5.09 16 40 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.39 7.43 -2.38 -0.02 1.38 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.74 6.21 -2.38 -0.01 1.72 16 Total: -1.00 -76.03 394.91 1.60 -74.44 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.20 Total: 17.04 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.24 Total: -3.52 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.61 Total: -85.53 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.09 Total: -38.97 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -76.03 1.60 -74.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295230744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.359 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds