Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48502 * 109.47321 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47130 * 120.00079 * 3 2 1 7 7 C 1.38653 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00325 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.35752 * 116.99915 * 185.04956 * 9 7 2 11 11 C 1.38884 * 120.06794 * 354.47176 * 10 9 7 12 12 C 1.38102 * 119.92831 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06737 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.92776 * 180.02562 * 13 12 11 15 15 N 1.46907 * 109.47245 * 89.99785 * 14 13 12 16 16 C 1.47481 * 110.99753 * 170.00280 * 15 14 13 17 17 C 1.53515 * 87.93151 * 138.70424 * 16 15 14 18 18 N 1.46499 * 114.16850 * 220.32467 * 17 16 15 19 19 C 1.34773 * 120.00098 * 204.99974 * 18 17 16 20 20 O 1.21612 * 119.99867 * 359.97438 * 19 18 17 21 21 C 1.43198 * 119.99910 * 180.02562 * 19 18 17 22 22 C 9.00804 * 154.96531 * 66.84688 * 12 1 2 23 23 C 8.98954 * 138.47580 * 32.63341 * 14 1 2 24 24 C 1.53003 * 117.50047 * 349.60070 * 23 22 21 25 25 C 1.53007 * 117.49746 * 280.94470 * 23 22 21 26 26 C 1.47475 * 110.99870 * 265.97061 * 15 14 13 27 27 C 1.38298 * 120.14332 * 0.29266 * 13 12 11 28 28 C 1.38101 * 120.06498 * 359.45169 * 27 13 12 29 29 H 0.96999 * 120.00166 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03254 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96271 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47183 * 329.99697 * 14 13 12 33 33 H 1.09002 * 109.47254 * 209.99748 * 14 13 12 34 34 H 1.09011 * 113.47216 * 253.46876 * 16 15 14 35 35 H 1.08998 * 113.47879 * 23.93462 * 16 15 14 36 36 H 1.08998 * 114.16916 * 87.61972 * 17 16 15 37 37 H 0.97006 * 119.99952 * 25.00379 * 18 17 16 38 38 H 1.08991 * 115.54836 * 135.27822 * 23 22 21 39 39 H 1.09001 * 117.49846 * 0.02562 * 24 23 22 40 40 H 1.08999 * 117.49478 * 145.01909 * 24 23 22 41 41 H 1.08995 * 117.49471 * 214.98414 * 25 23 22 42 42 H 1.09005 * 117.49774 * 359.97438 * 25 23 22 43 43 H 1.09000 * 113.47751 * 336.06102 * 26 15 14 44 44 H 1.09004 * 113.47867 * 106.52834 * 26 15 14 45 45 H 1.08001 * 119.96750 * 179.71104 * 27 13 12 46 46 H 1.08004 * 120.03477 * 180.27432 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1075 11 6 3.4571 -3.4394 0.0951 12 6 4.2023 -4.5971 0.2036 13 6 3.5684 -5.8202 0.3251 14 6 4.3846 -7.0815 0.4439 15 7 4.6560 -7.3576 1.8610 16 6 5.2431 -8.6992 2.0351 17 6 6.2006 -8.0856 3.0662 18 7 7.5733 -8.5910 2.9853 19 6 8.3698 -8.5551 4.0719 20 8 7.9491 -8.1027 5.1194 21 6 9.7117 -9.0487 3.9926 22 6 10.8128 -9.4532 3.9270 23 6 12.1919 -9.9614 3.8444 24 6 12.4051 -11.4626 4.0494 25 6 12.8348 -10.4730 5.1352 26 6 5.9574 -6.7964 2.2690 27 6 2.1872 -5.8890 0.3323 28 6 1.4365 -4.7344 0.2294 29 1 -0.4850 0.8400 0.0004 30 1 3.9526 -2.4845 -0.0002 31 1 5.2811 -4.5471 0.1936 32 1 5.3273 -6.9558 -0.0888 33 1 3.8310 -7.9147 0.0110 34 1 4.5505 -9.4241 2.4631 35 1 5.7464 -9.0721 1.1430 36 1 5.8072 -8.0628 4.0824 37 1 7.9090 -8.9515 2.1495 38 1 12.8375 -9.4547 3.1272 39 1 11.5242 -12.0740 4.2449 40 1 13.1912 -11.9434 3.4671 41 1 13.9034 -10.3030 5.2669 42 1 12.2367 -10.4328 6.0456 43 1 6.6514 -6.6615 1.4393 44 1 5.8704 -5.9085 2.8952 45 1 1.6952 -6.8462 0.4226 46 1 0.3578 -4.7883 0.2395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318020439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = 85.280735 kcal Electronic energy + Delta-G solvation = -26609.617739 eV Core-core repulsion = 22661.829356 eV Total energy + Delta-G solvation = -3947.788383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87341 -39.38006 -38.80211 -38.14357 -36.55009 -34.44689 -33.12274 -32.35365 -31.05068 -30.14601 -27.75984 -26.17148 -25.71617 -25.12834 -23.58869 -23.05775 -22.12079 -21.93366 -20.63124 -20.35707 -18.94694 -17.95961 -17.23162 -17.13041 -16.81830 -15.93833 -15.61516 -15.48190 -15.17655 -14.83587 -14.56700 -14.49084 -13.94775 -13.62773 -13.52398 -13.28344 -13.14376 -12.94043 -12.69514 -12.62710 -12.38999 -12.18899 -12.13285 -11.84598 -11.67602 -11.55909 -11.26347 -10.97020 -10.87456 -10.70102 -10.63059 -10.59599 -10.51526 -10.41657 -10.22905 -9.44816 -9.31549 -9.02243 -8.79733 -8.14868 -7.16092 -6.43223 -4.02149 1.10867 1.70310 2.25157 2.28194 2.59345 3.00931 3.13939 3.15593 3.18128 3.38414 3.62117 3.96100 3.98542 4.13822 4.19665 4.29571 4.40650 4.52920 4.68289 4.89977 4.94821 4.98725 4.99939 5.12346 5.15492 5.20427 5.29693 5.35279 5.37556 5.42663 5.44124 5.62203 5.67700 5.71479 5.79599 5.84707 6.04352 6.16149 6.25084 6.45947 6.72096 6.75236 6.86547 6.95019 7.01811 7.08169 7.27936 7.40303 7.46182 7.71693 7.85036 8.01673 9.02305 9.72626 10.74738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.001625 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.266888 B =17231.256675 C =18344.287059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.062 4.062 13 C -0.177 4.177 14 C 0.081 3.919 15 N -0.454 5.454 16 C -0.012 4.012 17 C 0.117 3.883 18 N -0.707 5.707 19 C 0.637 3.363 20 O -0.516 6.516 21 C -0.220 4.220 22 C -0.050 4.050 23 C -0.068 4.068 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.012 4.012 27 C -0.055 4.055 28 C -0.193 4.193 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.404 0.596 38 H 0.138 0.862 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.749 -22.665 3.699 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.253 4.253 12 C -0.081 4.081 13 C -0.178 4.178 14 C -0.046 4.046 15 N -0.177 5.177 16 C -0.142 4.142 17 C 0.012 3.988 18 N -0.357 5.357 19 C 0.423 3.577 20 O -0.393 6.393 21 C -0.222 4.222 22 C -0.052 4.052 23 C -0.086 4.086 24 C -0.196 4.196 25 C -0.197 4.197 26 C -0.143 4.143 27 C -0.074 4.074 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.128 0.872 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 21.323 -21.907 4.746 30.937 hybrid contribution 1.381 0.624 -1.054 1.846 sum 22.704 -21.283 3.692 31.338 Atomic orbital electron populations 1.70026 1.05945 1.27755 1.46026 1.25276 0.95831 0.98796 0.96551 0.85794 0.78713 0.79834 0.79161 1.19546 1.20259 1.19502 1.21272 0.91747 0.80861 1.52976 0.89169 1.83979 1.34356 1.11463 1.78335 1.19397 0.90276 0.88061 0.92080 1.21111 0.93835 0.98764 1.11637 1.20533 0.97886 0.91916 0.97746 1.18940 0.93478 0.93195 1.12220 1.21380 0.98407 0.96723 0.88135 1.69080 1.24773 1.03694 1.20130 1.24278 0.96660 0.95280 0.97969 1.22811 0.79821 0.94563 1.01557 1.45813 1.13376 1.63585 1.12963 1.14659 0.81209 0.77867 0.83934 1.90894 1.74275 1.44938 1.29162 1.20638 0.94078 1.03838 1.03694 1.21402 0.92296 0.94016 0.97521 1.18954 0.88317 0.97944 1.03349 1.23128 1.03949 0.90193 1.02296 1.23148 1.01770 1.02074 0.92736 1.24440 0.91199 0.99201 0.99421 1.20437 0.92797 0.96670 0.97446 1.20205 0.99555 0.90324 1.11183 0.91981 0.85680 0.88119 0.93719 0.90719 0.88753 0.91075 0.84922 0.76095 0.84477 0.88073 0.87248 0.87258 0.87955 0.90979 0.88814 0.87175 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.16 9.76 0.03 0.00 -5.16 16 10 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 12 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.18 -3.00 5.47 -104.58 -0.57 -3.57 16 14 C 0.08 1.03 4.94 -4.97 -0.02 1.01 16 15 N -0.45 -5.55 6.32 -246.11 -1.55 -7.10 16 16 C -0.01 -0.11 7.45 -7.55 -0.06 -0.16 16 17 C 0.12 1.14 4.59 -67.72 -0.31 0.83 16 18 N -0.71 -5.99 5.38 -55.98 -0.30 -6.29 16 19 C 0.64 7.23 7.65 -14.34 -0.11 7.12 16 20 O -0.52 -7.91 16.68 5.27 0.09 -7.83 16 21 C -0.22 -2.19 13.62 -38.83 -0.53 -2.72 16 22 C -0.05 -0.41 13.48 -37.11 -0.50 -0.91 16 23 C -0.07 -0.34 6.21 -93.40 -0.58 -0.92 16 24 C -0.16 -0.55 10.21 -26.69 -0.27 -0.82 16 25 C -0.16 -0.63 10.21 -26.69 -0.27 -0.90 16 26 C -0.01 -0.14 7.52 -7.56 -0.06 -0.20 16 27 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 28 C -0.19 -4.16 9.99 -39.40 -0.39 -4.55 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 31 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.04 0.51 7.24 -51.93 -0.38 0.13 16 33 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 36 H 0.13 1.52 7.45 -51.93 -0.39 1.13 16 37 H 0.40 2.31 8.72 -40.82 -0.36 1.95 16 38 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.72 7.42 -51.93 -0.39 0.33 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -34.20 401.28 -11.12 -45.32 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.26 Total: 4.50 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -4.87 Total: -20.44 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -1.10 Total: -38.16 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.20 -11.12 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318020439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.600 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds