Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00440 * 2 1 4 4 H 1.48496 * 109.47019 * 270.00293 * 3 2 1 5 5 H 1.48492 * 109.46910 * 30.00111 * 3 2 1 6 6 H 1.48501 * 109.46942 * 150.00254 * 3 2 1 7 7 C 1.38804 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47011 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00185 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99916 * 179.97438 * 11 10 9 14 14 C 1.47870 * 126.92805 * 0.02562 * 13 11 10 15 15 C 1.56024 * 105.11399 * 181.91514 * 14 13 11 16 16 H 1.08998 * 116.25677 * 159.69763 * 15 14 13 17 17 C 1.57088 * 100.40879 * 33.05018 * 15 14 13 18 18 C 1.49280 * 126.92962 * 179.97438 * 13 11 10 19 19 H 1.09000 * 116.12428 * 16.87566 * 18 13 11 20 20 C 1.55965 * 104.87179 * 246.63844 * 18 13 11 21 21 N 1.48286 * 105.08907 * 289.93526 * 20 18 13 22 22 C 1.46902 * 111.00114 * 121.27096 * 21 20 18 23 23 C 1.53004 * 109.47130 * 188.41576 * 22 21 20 24 24 C 1.52997 * 109.47203 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.82311 * 305.57252 * 24 23 22 26 26 C 1.54380 * 109.83376 * 184.58678 * 24 23 22 27 27 C 1.55302 * 102.25383 * 219.13368 * 26 24 23 28 28 C 1.54945 * 100.94394 * 34.13123 * 27 26 24 29 29 O 1.43243 * 109.82949 * 66.45254 * 24 23 22 30 30 H 0.97001 * 119.99298 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47682 * 59.99891 * 10 9 7 32 32 H 1.09001 * 109.46945 * 299.99774 * 10 9 7 33 33 H 1.09002 * 110.31419 * 63.00444 * 14 13 11 34 34 H 1.08998 * 110.39543 * 300.86495 * 14 13 11 35 35 H 1.08994 * 112.35917 * 64.12710 * 17 15 14 36 36 H 1.09002 * 112.35556 * 191.54505 * 17 15 14 37 37 H 1.08995 * 111.38697 * 170.46730 * 20 18 13 38 38 H 1.09003 * 109.23170 * 48.29586 * 20 18 13 39 39 H 1.08998 * 109.46691 * 308.41132 * 22 21 20 40 40 H 1.09003 * 109.47475 * 68.41687 * 22 21 20 41 41 H 1.09003 * 109.47058 * 300.00128 * 23 22 21 42 42 H 1.09003 * 109.46851 * 59.99729 * 23 22 21 43 43 H 1.08999 * 110.84110 * 337.32234 * 26 24 23 44 44 H 1.09000 * 110.84544 * 100.93996 * 26 24 23 45 45 H 1.09006 * 111.12161 * 276.21480 * 27 26 24 46 46 H 1.08998 * 111.16153 * 152.07103 * 27 26 24 47 47 H 1.09002 * 110.31015 * 204.64189 * 28 27 26 48 48 H 1.09001 * 110.39506 * 82.51330 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4480 2.6526 0.7000 6 1 3.5480 1.4399 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9871 -5.3028 -0.0048 12 8 0.7908 -5.5024 -0.0050 13 7 2.8437 -6.3432 -0.0064 14 6 4.3210 -6.2777 -0.0060 15 6 4.7941 -7.7635 -0.0587 16 1 5.8136 -7.9330 -0.4053 17 6 3.6451 -8.3968 -0.9226 18 6 2.4927 -7.7942 -0.0078 19 1 1.4694 -8.0401 -0.2917 20 6 2.9802 -8.3253 1.3752 21 7 4.4608 -8.3000 1.2983 22 6 5.0284 -7.4508 2.3541 23 6 6.5305 -7.2798 2.1187 24 6 7.1215 -6.3948 3.2179 25 1 6.5748 -5.4532 3.2682 26 6 8.6126 -6.1220 2.9256 27 6 9.2451 -6.1960 4.3421 28 6 8.3645 -7.2876 5.0007 29 8 7.0440 -7.0695 4.4791 30 1 -0.4849 0.8401 0.0004 31 1 3.1243 -3.7323 0.8871 32 1 3.1242 -3.7307 -0.8928 33 1 4.6783 -5.7989 0.9057 34 1 4.6774 -5.7358 -0.8820 35 1 3.6175 -7.9940 -1.9350 36 1 3.6744 -9.4864 -0.9168 37 1 2.6278 -9.3405 1.5577 38 1 2.6304 -7.6554 2.1607 39 1 4.5441 -6.4745 2.3346 40 1 4.8637 -7.9188 3.3247 41 1 7.0148 -8.2561 2.1380 42 1 6.6951 -6.8118 1.1481 43 1 9.0274 -6.8918 2.2749 44 1 8.7479 -5.1313 2.4916 45 1 9.1486 -5.2447 4.8655 46 1 10.2877 -6.5098 4.2916 47 1 8.3668 -7.1725 6.0847 48 1 8.7208 -8.2803 4.7256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318187107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -41.602203 kcal Electronic energy + Delta-G solvation = -27980.236958 eV Core-core repulsion = 24162.390469 eV Total energy + Delta-G solvation = -3817.846489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30494 -39.74968 -38.21121 -34.79074 -32.83242 -32.44763 -32.37196 -30.51371 -29.94166 -28.71184 -26.99692 -25.52557 -24.94929 -23.51912 -21.94895 -21.67188 -21.21766 -20.06658 -18.73578 -17.77136 -17.32719 -16.86651 -16.61737 -16.27252 -15.77317 -15.26692 -14.82476 -14.70810 -14.54854 -14.36244 -13.85930 -13.84320 -13.51324 -13.29064 -13.09028 -12.77386 -12.62589 -12.55343 -12.18398 -12.10822 -12.05402 -11.77676 -11.69672 -11.64539 -11.32280 -11.23196 -11.18513 -11.07967 -11.04388 -11.03736 -10.78881 -10.77127 -9.83573 -9.78786 -9.47204 -9.08436 -8.70886 -8.31599 -8.25739 -6.52364 -6.23372 -3.94233 2.81087 3.01746 3.20624 3.23230 3.28411 3.49924 3.55705 3.61488 4.12311 4.14472 4.18607 4.30283 4.35079 4.51048 4.61128 4.77590 4.81503 4.85060 4.88131 4.93102 5.00292 5.11655 5.18063 5.23786 5.31523 5.32869 5.37184 5.39639 5.44609 5.50022 5.51854 5.56514 5.61723 5.64508 5.68397 5.70106 5.76009 5.81916 5.88329 5.92946 6.02189 6.10101 6.29562 6.56949 6.75234 6.81995 7.57383 7.66590 8.33219 8.52359 9.21741 10.84113 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003162 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.082176 B = 8852.485495 C =11207.803941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.146 4.146 11 C 0.551 3.449 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.063 3.937 15 C 0.050 3.950 16 H 0.130 0.870 17 C -0.134 4.134 18 C 0.112 3.888 19 H 0.126 0.874 20 C 0.026 3.974 21 N -0.514 5.514 22 C 0.043 3.957 23 C -0.126 4.126 24 C 0.079 3.921 25 H 0.081 0.919 26 C -0.151 4.151 27 C -0.158 4.158 28 C 0.050 3.950 29 O -0.376 6.376 30 H 0.269 0.731 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.579 -18.504 4.056 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.340 3.660 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.061 4.061 15 C -0.058 4.058 16 H 0.148 0.852 17 C -0.173 4.173 18 C 0.008 3.992 19 H 0.144 0.856 20 C -0.102 4.102 21 N -0.237 5.237 22 C -0.084 4.084 23 C -0.164 4.164 24 C 0.021 3.979 25 H 0.099 0.901 26 C -0.188 4.188 27 C -0.195 4.195 28 C -0.026 4.026 29 O -0.295 6.295 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.578 -19.161 4.267 26.351 hybrid contribution 1.980 2.328 -0.139 3.059 sum 19.558 -16.833 4.128 26.133 Atomic orbital electron populations 1.70020 1.05954 1.27476 1.46778 1.24993 0.95032 0.99017 0.94510 0.86166 0.79409 0.81559 0.78363 1.20240 1.20696 1.19707 1.22849 0.94852 0.91615 1.59054 0.91003 1.85402 1.04863 0.96299 1.96698 1.23497 1.06453 0.95088 1.04574 1.20023 0.85663 0.85348 0.74934 1.90708 1.14816 1.85051 1.48283 1.49227 1.06216 1.05504 1.75525 1.23242 0.81265 0.98899 1.02704 1.24631 0.99616 0.91074 0.90523 0.85207 1.24266 0.93799 1.01044 0.98144 1.24223 0.99782 0.80184 0.95016 0.85592 1.23679 0.87672 1.01635 0.97259 1.65052 1.08696 1.48258 1.01739 1.22379 0.94227 0.96106 0.95719 1.22029 0.95641 1.00817 0.97931 1.22777 0.95747 0.95334 0.84028 0.90119 1.23173 0.94758 1.03280 0.97634 1.23268 1.00181 1.00157 0.95937 1.23355 0.82710 0.97725 0.98849 1.88464 1.26938 1.78951 1.35167 0.92153 0.89615 0.89442 0.90264 0.91078 0.89885 0.88681 0.89113 0.91942 0.93794 0.89850 0.90560 0.90843 0.90297 0.89863 0.90313 0.90003 0.89902 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.07 5.44 36.01 0.20 -2.87 16 11 C 0.55 10.91 7.91 -10.98 -0.09 10.82 16 12 O -0.51 -12.13 16.21 5.56 0.09 -12.04 16 13 N -0.63 -9.26 2.98 -155.60 -0.46 -9.73 16 14 C 0.06 0.71 5.27 -1.67 -0.01 0.71 16 15 C 0.05 0.44 4.03 -62.32 -0.25 0.19 16 16 H 0.13 0.88 7.57 -51.93 -0.39 0.49 16 17 C -0.13 -1.22 6.94 -21.18 -0.15 -1.37 16 18 C 0.11 1.36 5.26 -61.47 -0.32 1.04 16 19 H 0.13 1.61 8.06 -51.93 -0.42 1.19 16 20 C 0.03 0.29 6.28 -1.47 -0.01 0.28 16 21 N -0.51 -5.15 5.39 -216.80 -1.17 -6.32 16 22 C 0.04 0.45 4.14 -3.82 -0.02 0.43 16 23 C -0.13 -1.04 4.32 -26.73 -0.12 -1.15 16 24 C 0.08 0.69 3.52 -26.01 -0.09 0.60 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 C -0.15 -0.98 6.54 -24.79 -0.16 -1.15 16 27 C -0.16 -0.96 7.16 -24.48 -0.18 -1.14 16 28 C 0.05 0.37 7.78 38.18 0.30 0.67 16 29 O -0.38 -3.90 10.63 -35.23 -0.37 -4.28 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 33 H 0.08 0.91 5.02 -51.93 -0.26 0.65 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.82 7.56 -51.93 -0.39 0.43 16 39 H 0.04 0.53 5.82 -51.93 -0.30 0.22 16 40 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.53 6.28 -51.93 -0.33 0.20 16 43 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -34.71 387.47 -11.23 -45.93 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.95 Total: -0.42 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.70 Total: -6.01 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.90 Total: -41.61 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.28 Total: -16.32 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.71 -11.23 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318187107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.331 kcal (2) G-P(sol) polarization free energy of solvation -34.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds