Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00440 * 2 1 4 4 H 1.48496 * 109.47019 * 270.00293 * 3 2 1 5 5 H 1.48492 * 109.46910 * 30.00111 * 3 2 1 6 6 H 1.48501 * 109.46942 * 150.00254 * 3 2 1 7 7 C 1.38804 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99838 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47011 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00185 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99916 * 179.97438 * 11 10 9 14 14 C 1.47870 * 126.92805 * 0.02562 * 13 11 10 15 15 C 1.56024 * 105.11399 * 181.91514 * 14 13 11 16 16 H 1.08998 * 116.25677 * 159.69763 * 15 14 13 17 17 C 1.57088 * 100.40879 * 33.05018 * 15 14 13 18 18 C 1.49280 * 126.92962 * 179.97438 * 13 11 10 19 19 H 1.09000 * 116.12428 * 16.87566 * 18 13 11 20 20 C 1.55965 * 104.87179 * 246.63844 * 18 13 11 21 21 N 1.48286 * 105.08907 * 289.93526 * 20 18 13 22 22 C 1.46902 * 111.00114 * 121.27096 * 21 20 18 23 23 C 1.53004 * 109.47130 * 188.41576 * 22 21 20 24 24 C 1.52997 * 109.47203 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.82311 * 305.57252 * 24 23 22 26 26 C 1.54380 * 109.83376 * 184.58678 * 24 23 22 27 27 C 1.55302 * 102.25383 * 219.13368 * 26 24 23 28 28 C 1.54945 * 100.94394 * 34.13123 * 27 26 24 29 29 O 1.43243 * 109.82949 * 66.45254 * 24 23 22 30 30 H 0.97001 * 119.99298 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47682 * 59.99891 * 10 9 7 32 32 H 1.09001 * 109.46945 * 299.99774 * 10 9 7 33 33 H 1.09002 * 110.31419 * 63.00444 * 14 13 11 34 34 H 1.08998 * 110.39543 * 300.86495 * 14 13 11 35 35 H 1.08994 * 112.35917 * 64.12710 * 17 15 14 36 36 H 1.09002 * 112.35556 * 191.54505 * 17 15 14 37 37 H 1.08995 * 111.38697 * 170.46730 * 20 18 13 38 38 H 1.09003 * 109.23170 * 48.29586 * 20 18 13 39 39 H 1.08998 * 109.46691 * 308.41132 * 22 21 20 40 40 H 1.09003 * 109.47475 * 68.41687 * 22 21 20 41 41 H 1.09003 * 109.47058 * 300.00128 * 23 22 21 42 42 H 1.09003 * 109.46851 * 59.99729 * 23 22 21 43 43 H 1.08999 * 110.84110 * 337.32234 * 26 24 23 44 44 H 1.09000 * 110.84544 * 100.93996 * 26 24 23 45 45 H 1.09006 * 111.12161 * 276.21480 * 27 26 24 46 46 H 1.08998 * 111.16153 * 152.07103 * 27 26 24 47 47 H 1.09002 * 110.31015 * 204.64189 * 28 27 26 48 48 H 1.09001 * 110.39506 * 82.51330 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4480 2.6526 0.7000 6 1 3.5480 1.4399 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0029 11 6 1.9871 -5.3028 -0.0048 12 8 0.7908 -5.5024 -0.0050 13 7 2.8437 -6.3432 -0.0064 14 6 4.3210 -6.2777 -0.0060 15 6 4.7941 -7.7635 -0.0587 16 1 5.8136 -7.9330 -0.4053 17 6 3.6451 -8.3968 -0.9226 18 6 2.4927 -7.7942 -0.0078 19 1 1.4694 -8.0401 -0.2917 20 6 2.9802 -8.3253 1.3752 21 7 4.4608 -8.3000 1.2983 22 6 5.0284 -7.4508 2.3541 23 6 6.5305 -7.2798 2.1187 24 6 7.1215 -6.3948 3.2179 25 1 6.5748 -5.4532 3.2682 26 6 8.6126 -6.1220 2.9256 27 6 9.2451 -6.1960 4.3421 28 6 8.3645 -7.2876 5.0007 29 8 7.0440 -7.0695 4.4791 30 1 -0.4849 0.8401 0.0004 31 1 3.1243 -3.7323 0.8871 32 1 3.1242 -3.7307 -0.8928 33 1 4.6783 -5.7989 0.9057 34 1 4.6774 -5.7358 -0.8820 35 1 3.6175 -7.9940 -1.9350 36 1 3.6744 -9.4864 -0.9168 37 1 2.6278 -9.3405 1.5577 38 1 2.6304 -7.6554 2.1607 39 1 4.5441 -6.4745 2.3346 40 1 4.8637 -7.9188 3.3247 41 1 7.0148 -8.2561 2.1380 42 1 6.6951 -6.8118 1.1481 43 1 9.0274 -6.8918 2.2749 44 1 8.7479 -5.1313 2.4916 45 1 9.1486 -5.2447 4.8655 46 1 10.2877 -6.5098 4.2916 47 1 8.3668 -7.1725 6.0847 48 1 8.7208 -8.2803 4.7256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318187107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = -65.823790 kcal Electronic energy + Delta-G solvation = -27981.287285 eV Core-core repulsion = 24162.390469 eV Total energy + Delta-G solvation = -3818.896816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29194 -40.41743 -39.66384 -35.76563 -34.62946 -33.84680 -32.99489 -31.51296 -30.85953 -30.08565 -27.77179 -27.64684 -25.98207 -24.27241 -22.71206 -22.46535 -22.01487 -20.99626 -20.13130 -19.41385 -18.30359 -18.01589 -17.53676 -17.02024 -16.93556 -16.86984 -16.31245 -16.12546 -15.89499 -15.39232 -14.96788 -14.65906 -14.62847 -14.35059 -14.10157 -13.99331 -13.65658 -13.62238 -13.41113 -13.21948 -13.09745 -12.92026 -12.71219 -12.65173 -12.59523 -12.49060 -12.24698 -12.14495 -12.06555 -11.77226 -11.76701 -11.67373 -11.48987 -11.17981 -11.07566 -10.44986 -10.35177 -9.84149 -9.30069 -8.73791 -8.38586 -6.18307 1.17180 1.40148 1.40415 1.47287 1.52886 1.95082 2.23196 2.75098 2.94848 2.95569 3.14661 3.33168 3.40900 3.58188 3.63335 3.74576 3.89407 3.93794 4.00415 4.08039 4.10830 4.15659 4.27192 4.31137 4.34076 4.40199 4.41196 4.47018 4.63016 4.68504 4.79286 4.82502 4.83255 4.85298 4.92345 4.95433 4.96360 4.98889 5.05129 5.13399 5.20927 5.22193 5.36604 5.36889 5.72139 5.94628 6.15399 6.15577 6.33234 7.01852 7.02414 8.70897 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.003162 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.082176 B = 8852.485495 C =11207.803941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.566 6.566 13 N -0.618 5.618 14 C 0.052 3.948 15 C 0.064 3.936 16 H 0.168 0.832 17 C -0.117 4.117 18 C 0.094 3.906 19 H 0.114 0.886 20 C 0.032 3.968 21 N -0.507 5.507 22 C 0.049 3.951 23 C -0.115 4.115 24 C 0.073 3.927 25 H 0.063 0.937 26 C -0.146 4.146 27 C -0.154 4.154 28 C 0.042 3.958 29 O -0.405 6.405 30 H 0.272 0.728 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.033 0.967 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.565 -19.341 3.130 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.269 4.269 11 C 0.337 3.663 12 O -0.444 6.444 13 N -0.354 5.354 14 C -0.071 4.071 15 C -0.044 4.044 16 H 0.185 0.815 17 C -0.155 4.155 18 C -0.009 4.009 19 H 0.132 0.868 20 C -0.097 4.097 21 N -0.231 5.231 22 C -0.079 4.079 23 C -0.153 4.153 24 C 0.015 3.985 25 H 0.081 0.919 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.034 4.034 29 O -0.326 6.326 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.120 0.880 47 H 0.103 0.897 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.625 -20.049 3.341 29.677 hybrid contribution 0.770 2.438 0.209 2.565 sum 22.394 -17.611 3.551 28.710 Atomic orbital electron populations 1.70186 1.08027 1.28727 1.47784 1.26162 0.95996 1.03375 0.93559 0.84929 0.78170 0.75794 0.78940 1.19060 1.20169 1.18172 1.23173 0.95260 0.91845 1.59251 0.90026 1.85583 1.10269 0.99223 1.97020 1.23273 1.03464 0.94309 1.05850 1.19750 0.85474 0.85868 0.75238 1.90681 1.16898 1.85691 1.51179 1.49163 1.07581 1.05679 1.72942 1.23595 0.78741 1.01384 1.03381 1.24881 1.01276 0.88635 0.89574 0.81487 1.24256 0.91408 1.02244 0.97562 1.24508 1.00768 0.78555 0.97048 0.86843 1.23633 0.88645 1.01793 0.95605 1.65124 1.07508 1.48027 1.02425 1.22283 0.95796 0.94651 0.95140 1.21959 0.93574 1.01187 0.98537 1.22842 0.97278 0.94633 0.83774 0.91883 1.23170 0.92959 1.04101 0.98098 1.23269 1.00979 0.99470 0.95447 1.23538 0.81931 0.98758 0.99183 1.88437 1.28879 1.79174 1.36083 0.91886 0.88472 0.87658 0.90374 0.89565 0.89301 0.86350 0.87371 0.94805 0.95956 0.91640 0.89938 0.89076 0.88798 0.89286 0.90839 0.88015 0.89655 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.34 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.55 -31.86 9.50 67.96 0.65 -31.22 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 10 C -0.12 -5.03 5.44 71.24 0.39 -4.64 16 11 C 0.55 22.24 7.91 87.66 0.69 22.94 16 12 O -0.57 -28.08 16.21 -3.02 -0.05 -28.12 16 13 N -0.62 -18.00 2.98 -764.60 -2.28 -20.28 16 14 C 0.05 1.06 5.27 87.16 0.46 1.52 16 15 C 0.06 0.89 4.03 46.86 0.19 1.08 16 16 H 0.17 1.27 7.57 -2.39 -0.02 1.26 16 17 C -0.12 -1.73 6.94 34.19 0.24 -1.49 16 18 C 0.09 2.22 5.26 47.64 0.25 2.47 16 19 H 0.11 2.96 8.06 -2.39 -0.02 2.94 16 20 C 0.03 0.69 6.28 87.06 0.55 1.24 16 21 N -0.51 -9.04 5.39 -839.81 -4.52 -13.56 16 22 C 0.05 0.97 4.14 86.30 0.36 1.32 16 23 C -0.11 -1.61 4.32 30.59 0.13 -1.48 16 24 C 0.07 1.17 3.52 31.06 0.11 1.28 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 C -0.15 -1.54 6.54 31.85 0.21 -1.33 16 27 C -0.15 -1.56 7.16 32.05 0.23 -1.33 16 28 C 0.04 0.56 7.78 72.65 0.56 1.13 16 29 O -0.41 -8.23 10.63 -148.98 -1.58 -9.81 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.08 1.67 5.02 -2.39 -0.01 1.66 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.03 0.92 7.56 -2.39 -0.02 0.91 16 39 H 0.02 0.54 5.82 -2.39 -0.01 0.52 16 40 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 0.95 6.28 -2.39 -0.01 0.94 16 43 H 0.09 0.72 7.85 -2.39 -0.02 0.70 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -79.67 387.47 -0.87 -80.54 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.94 Total: 18.62 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.48 Total: -7.23 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -6.52 Total: -90.18 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -1.63 Total: -37.93 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -79.67 -0.87 -80.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318187107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.717 kcal (2) G-P(sol) polarization free energy of solvation -79.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds