Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46661 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47240 * 299.99867 * 3 2 1 6 6 H 1.48497 * 109.47117 * 60.00299 * 3 2 1 7 7 C 1.38807 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00115 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46759 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47001 * 179.97438 * 11 10 9 13 13 C 1.53346 * 109.41904 * 295.13027 * 12 11 10 14 14 C 1.53195 * 109.14901 * 178.67276 * 13 12 11 15 15 N 1.46919 * 108.89273 * 54.57640 * 14 13 12 16 16 C 1.34778 * 120.63255 * 126.34238 * 15 14 13 17 17 O 1.21279 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00023 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46931 * 180.02562 * 18 16 15 20 20 F 1.39900 * 109.47225 * 300.00028 * 19 18 16 21 21 F 1.39895 * 109.47359 * 60.00193 * 19 18 16 22 22 C 1.53000 * 109.47098 * 180.02562 * 19 18 16 23 23 F 1.39908 * 109.47314 * 180.02562 * 22 19 18 24 24 F 1.39905 * 109.47329 * 299.99830 * 22 19 18 25 25 C 1.46933 * 118.74003 * 306.32349 * 15 14 13 26 26 C 1.53034 * 109.46014 * 174.99893 * 12 11 10 27 27 H 0.96996 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99460 * 0.02562 * 9 7 2 29 29 H 1.08991 * 109.46775 * 60.00214 * 10 9 7 30 30 H 1.08999 * 109.46999 * 299.99908 * 10 9 7 31 31 H 1.09001 * 109.47533 * 60.00412 * 11 10 9 32 32 H 1.08997 * 109.47446 * 300.00079 * 11 10 9 33 33 H 1.09001 * 109.45799 * 55.03056 * 12 11 10 34 34 H 1.08997 * 109.68637 * 58.70485 * 13 12 11 35 35 H 1.09002 * 109.47277 * 298.50741 * 13 12 11 36 36 H 1.09002 * 109.58720 * 294.71670 * 14 13 12 37 37 H 1.08996 * 109.58651 * 174.43567 * 14 13 12 38 38 H 1.09001 * 109.47488 * 299.99559 * 18 16 15 39 39 H 1.09001 * 109.47269 * 59.99982 * 18 16 15 40 40 H 1.09001 * 109.47240 * 59.99862 * 22 19 18 41 41 H 1.08994 * 109.58580 * 173.39910 * 25 15 14 42 42 H 1.09006 * 109.57831 * 293.67403 * 25 15 14 43 43 H 1.08994 * 109.50232 * 61.43679 * 26 12 11 44 44 H 1.09007 * 109.52628 * 301.35340 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 -0.0008 13 6 2.6157 -6.2785 -1.3101 14 6 3.4051 -7.5913 -1.2901 15 7 2.4781 -8.6999 -1.0253 16 6 2.4247 -9.7629 -1.8522 17 8 3.1460 -9.8104 -2.8260 18 6 1.4689 -10.8924 -1.5667 19 6 1.6082 -11.9644 -2.6494 20 9 1.3121 -11.4073 -3.8981 21 9 2.9190 -12.4532 -2.6558 22 6 0.6373 -13.1109 -2.3599 23 9 0.7651 -14.0914 -3.3497 24 9 0.9328 -13.6682 -1.1112 25 6 1.6104 -8.6280 0.1583 26 6 0.8388 -7.3050 0.1244 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6847 -3.7145 -0.8894 31 1 0.4375 -4.7618 -0.8903 32 1 0.4368 -4.7622 0.8896 33 1 2.5204 -6.1651 0.8415 34 1 3.3055 -5.4407 -1.4112 35 1 1.9228 -6.2835 -2.1516 36 1 4.1607 -7.5514 -0.5054 37 1 3.8884 -7.7417 -2.2554 38 1 1.6998 -11.3268 -0.5940 39 1 0.4476 -10.5115 -1.5612 40 1 -0.3839 -12.7298 -2.3552 41 1 0.9079 -9.4612 0.1475 42 1 2.2195 -8.6752 1.0611 43 1 0.1626 -7.3002 -0.7304 44 1 0.2637 -7.1957 1.0439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318915160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -234.856245 kcal Electronic energy + Delta-G solvation = -30065.291956 eV Core-core repulsion = 25130.995427 eV Total energy + Delta-G solvation = -4934.296530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.32835 -49.07678 -47.95756 -47.45728 -40.55455 -38.12481 -35.44796 -33.85393 -33.28929 -31.39035 -31.16324 -28.89050 -27.88178 -25.16203 -23.77542 -23.23774 -22.59321 -21.34835 -20.41312 -19.53801 -19.04530 -18.80218 -18.15217 -17.28696 -17.24527 -16.99691 -16.72373 -15.90931 -15.77349 -14.97805 -14.83694 -14.73802 -14.66957 -14.45138 -14.21652 -14.15082 -14.02750 -13.86927 -13.85042 -13.77986 -13.38509 -13.27371 -13.07000 -12.85772 -12.68546 -12.66350 -12.27676 -11.53118 -11.35778 -11.34209 -11.21877 -11.05402 -10.80630 -10.65195 -10.42014 -10.31082 -10.14756 -9.94716 -9.69863 -8.96736 -8.87316 -6.92466 -5.77906 -3.06384 1.98952 2.14871 2.54816 2.98706 3.18425 3.33361 3.36748 3.42268 3.47866 3.50148 3.96630 4.05849 4.18785 4.40823 4.54122 4.58057 4.66534 4.70696 4.72340 4.90409 5.06308 5.10679 5.28801 5.49954 5.52554 5.58999 5.61879 5.73287 5.79383 5.87899 6.03015 6.08481 6.23120 6.32812 6.38167 6.40586 6.83957 6.88640 6.96698 7.69228 7.70239 8.41494 9.52345 10.11232 10.45229 11.45218 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.031699 B = 0.001825 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.090256 B =15341.763238 C =15525.176777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.120 4.120 12 C -0.083 4.083 13 C -0.131 4.131 14 C 0.111 3.889 15 N -0.605 5.605 16 C 0.519 3.481 17 O -0.523 6.523 18 C -0.194 4.194 19 C 0.271 3.729 20 F -0.166 7.166 21 F -0.169 7.169 22 C 0.236 3.764 23 F -0.181 7.181 24 F -0.180 7.180 25 C 0.103 3.897 26 C -0.131 4.131 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.016 0.984 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -29.456 -0.246 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.158 4.158 12 C -0.102 4.102 13 C -0.169 4.169 14 C -0.010 4.010 15 N -0.338 5.338 16 C 0.305 3.695 17 O -0.398 6.398 18 C -0.234 4.234 19 C 0.233 3.767 20 F -0.147 7.147 21 F -0.150 7.150 22 C 0.181 3.819 23 F -0.162 7.162 24 F -0.162 7.162 25 C -0.019 4.019 26 C -0.169 4.169 27 H 0.064 0.936 28 H 0.216 0.784 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.278 -29.394 -0.800 29.406 hybrid contribution 0.140 0.902 0.031 0.913 sum -0.138 -28.491 -0.769 28.502 Atomic orbital electron populations 1.69669 1.05120 1.25521 1.58012 1.24757 0.95559 0.97755 1.03143 0.86111 0.78788 0.84083 0.77195 1.20545 1.21847 1.21869 1.19287 0.91063 0.84228 1.42347 0.91159 1.42397 1.05884 1.00159 1.89466 1.20698 0.93615 0.85591 0.97636 1.21755 0.98691 0.93329 1.02059 1.21145 0.96877 0.94439 0.97752 1.22113 0.99969 0.96601 0.98244 1.21732 0.91330 0.84983 1.02990 1.48064 1.40217 1.19597 1.25955 1.19791 0.83695 0.82936 0.83098 1.90812 1.42706 1.78704 1.27615 1.22875 1.04380 0.95547 1.00636 1.21569 0.80596 0.91029 0.83518 1.93142 1.92845 1.85798 1.42910 1.93137 1.37007 1.88307 1.96565 1.22854 1.01333 0.84402 0.73330 1.93091 1.97263 1.64466 1.61378 1.93071 1.95080 1.86614 1.41396 1.21887 0.93283 0.99033 0.87733 1.21996 0.98221 0.93561 1.03106 0.93580 0.78378 0.96620 0.96258 0.92023 0.91888 0.90884 0.89517 0.91426 0.91152 0.88921 0.84787 0.84934 0.83752 0.90080 0.90626 0.91297 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.74 -18.61 5.60 -59.91 -0.34 -18.95 16 10 C 0.15 2.94 6.02 -4.04 -0.02 2.92 16 11 C -0.12 -1.76 4.80 -26.73 -0.13 -1.89 16 12 C -0.08 -0.89 2.15 -90.42 -0.19 -1.08 16 13 C -0.13 -1.45 5.16 -26.45 -0.14 -1.59 16 14 C 0.11 1.13 6.42 -3.71 -0.02 1.11 16 15 N -0.60 -5.43 2.97 -172.77 -0.51 -5.94 16 16 C 0.52 5.29 7.47 -10.99 -0.08 5.21 16 17 O -0.52 -7.66 14.25 5.56 0.08 -7.58 16 18 C -0.19 -1.12 3.52 -27.88 -0.10 -1.22 16 19 C 0.27 2.21 1.40 -26.73 -0.04 2.17 16 20 F -0.17 -1.75 16.12 2.25 0.04 -1.72 16 21 F -0.17 -1.96 16.11 2.25 0.04 -1.92 16 22 C 0.24 1.26 4.83 37.16 0.18 1.44 16 23 F -0.18 -1.48 17.30 2.25 0.04 -1.44 16 24 F -0.18 -1.09 16.80 2.25 0.04 -1.05 16 25 C 0.10 0.63 6.34 -3.71 -0.02 0.61 16 26 C -0.13 -1.03 5.36 -26.62 -0.14 -1.17 16 27 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.38 6.53 -51.93 -0.34 0.04 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.04 6.52 -51.93 -0.34 0.70 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 38 H 0.13 0.45 7.60 -51.93 -0.39 0.06 16 39 H 0.13 0.30 7.69 -51.93 -0.40 -0.10 16 40 H 0.15 0.11 8.14 -51.93 -0.42 -0.32 16 41 H 0.08 0.26 5.93 -51.93 -0.31 -0.05 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -35.91 368.55 -6.55 -42.46 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.23 Total: 1.69 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -0.96 Total: -0.93 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.12 Total: -52.50 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.15 Total: -6.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.91 -6.55 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318915160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.394 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds