Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48505 * 109.46661 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47240 * 299.99867 * 3 2 1 6 6 H 1.48497 * 109.47117 * 60.00299 * 3 2 1 7 7 C 1.38807 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00115 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46759 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47001 * 179.97438 * 11 10 9 13 13 C 1.53346 * 109.41904 * 295.13027 * 12 11 10 14 14 C 1.53195 * 109.14901 * 178.67276 * 13 12 11 15 15 N 1.46919 * 108.89273 * 54.57640 * 14 13 12 16 16 C 1.34778 * 120.63255 * 126.34238 * 15 14 13 17 17 O 1.21279 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00023 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46931 * 180.02562 * 18 16 15 20 20 F 1.39900 * 109.47225 * 300.00028 * 19 18 16 21 21 F 1.39895 * 109.47359 * 60.00193 * 19 18 16 22 22 C 1.53000 * 109.47098 * 180.02562 * 19 18 16 23 23 F 1.39908 * 109.47314 * 180.02562 * 22 19 18 24 24 F 1.39905 * 109.47329 * 299.99830 * 22 19 18 25 25 C 1.46933 * 118.74003 * 306.32349 * 15 14 13 26 26 C 1.53034 * 109.46014 * 174.99893 * 12 11 10 27 27 H 0.96996 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99460 * 0.02562 * 9 7 2 29 29 H 1.08991 * 109.46775 * 60.00214 * 10 9 7 30 30 H 1.08999 * 109.46999 * 299.99908 * 10 9 7 31 31 H 1.09001 * 109.47533 * 60.00412 * 11 10 9 32 32 H 1.08997 * 109.47446 * 300.00079 * 11 10 9 33 33 H 1.09001 * 109.45799 * 55.03056 * 12 11 10 34 34 H 1.08997 * 109.68637 * 58.70485 * 13 12 11 35 35 H 1.09002 * 109.47277 * 298.50741 * 13 12 11 36 36 H 1.09002 * 109.58720 * 294.71670 * 14 13 12 37 37 H 1.08996 * 109.58651 * 174.43567 * 14 13 12 38 38 H 1.09001 * 109.47488 * 299.99559 * 18 16 15 39 39 H 1.09001 * 109.47269 * 59.99982 * 18 16 15 40 40 H 1.09001 * 109.47240 * 59.99862 * 22 19 18 41 41 H 1.08994 * 109.58580 * 173.39910 * 25 15 14 42 42 H 1.09006 * 109.57831 * 293.67403 * 25 15 14 43 43 H 1.08994 * 109.50232 * 61.43679 * 26 12 11 44 44 H 1.09007 * 109.52628 * 301.35340 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 6 1.8288 -6.1448 -0.0008 13 6 2.6157 -6.2785 -1.3101 14 6 3.4051 -7.5913 -1.2901 15 7 2.4781 -8.6999 -1.0253 16 6 2.4247 -9.7629 -1.8522 17 8 3.1460 -9.8104 -2.8260 18 6 1.4689 -10.8924 -1.5667 19 6 1.6082 -11.9644 -2.6494 20 9 1.3121 -11.4073 -3.8981 21 9 2.9190 -12.4532 -2.6558 22 6 0.6373 -13.1109 -2.3599 23 9 0.7651 -14.0914 -3.3497 24 9 0.9328 -13.6682 -1.1112 25 6 1.6104 -8.6280 0.1583 26 6 0.8388 -7.3050 0.1244 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.6847 -3.7145 0.8905 30 1 2.6847 -3.7145 -0.8894 31 1 0.4375 -4.7618 -0.8903 32 1 0.4368 -4.7622 0.8896 33 1 2.5204 -6.1651 0.8415 34 1 3.3055 -5.4407 -1.4112 35 1 1.9228 -6.2835 -2.1516 36 1 4.1607 -7.5514 -0.5054 37 1 3.8884 -7.7417 -2.2554 38 1 1.6998 -11.3268 -0.5940 39 1 0.4476 -10.5115 -1.5612 40 1 -0.3839 -12.7298 -2.3552 41 1 0.9079 -9.4612 0.1475 42 1 2.2195 -8.6752 1.0611 43 1 0.1626 -7.3002 -0.7304 44 1 0.2637 -7.1957 1.0439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318915160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = -258.460045 kcal Electronic energy + Delta-G solvation = -30066.315494 eV Core-core repulsion = 25130.995427 eV Total energy + Delta-G solvation = -4935.320067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.86456 -49.63407 -48.51172 -48.06888 -41.29935 -39.03012 -36.91490 -35.13423 -34.03172 -32.92914 -32.04199 -30.09532 -28.61922 -26.54019 -24.68621 -24.47862 -23.31737 -22.58505 -21.40529 -20.23723 -19.55918 -19.38602 -19.12318 -18.65516 -17.89732 -17.76394 -17.34136 -16.69415 -16.61716 -16.49830 -15.80757 -15.56147 -15.49802 -15.33545 -15.14962 -15.12512 -14.89186 -14.80232 -14.64343 -14.59309 -14.38520 -14.23808 -13.98999 -13.89432 -13.36217 -13.29664 -13.07752 -13.02345 -12.87531 -12.50537 -12.26055 -12.18084 -12.08522 -11.97308 -11.87145 -11.62492 -11.33158 -11.26682 -10.99007 -10.85211 -9.71260 -9.00105 -7.97225 -5.25873 1.44978 1.46223 1.47016 1.50560 1.57188 1.95444 2.50055 2.54675 2.79199 2.85205 3.00618 3.36470 3.45650 3.70606 3.73284 3.75964 3.82595 3.85954 4.13005 4.20698 4.23811 4.29797 4.34440 4.43623 4.54974 4.56196 4.68505 4.76984 4.86146 4.90776 4.99602 5.08024 5.12513 5.19762 5.33123 5.40310 5.48734 5.55527 5.58702 6.26399 6.29662 7.00035 7.31824 8.09550 8.31558 9.26654 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.031699 B = 0.001825 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.090256 B =15341.763238 C =15525.176777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.750 5.750 10 C 0.148 3.852 11 C -0.107 4.107 12 C -0.076 4.076 13 C -0.125 4.125 14 C 0.115 3.885 15 N -0.603 5.603 16 C 0.508 3.492 17 O -0.580 6.580 18 C -0.185 4.185 19 C 0.251 3.749 20 F -0.186 7.186 21 F -0.198 7.198 22 C 0.241 3.759 23 F -0.201 7.201 24 F -0.183 7.183 25 C 0.101 3.899 26 C -0.126 4.126 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.166 0.834 39 H 0.178 0.822 40 H 0.202 0.798 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -30.885 1.505 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.393 5.393 10 C 0.022 3.978 11 C -0.145 4.145 12 C -0.095 4.095 13 C -0.164 4.164 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.297 3.703 17 O -0.460 6.460 18 C -0.225 4.225 19 C 0.214 3.786 20 F -0.167 7.167 21 F -0.179 7.179 22 C 0.187 3.813 23 F -0.183 7.183 24 F -0.164 7.164 25 C -0.020 4.020 26 C -0.164 4.164 27 H 0.061 0.939 28 H 0.205 0.795 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.184 0.816 39 H 0.195 0.805 40 H 0.219 0.781 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.136 -30.855 0.985 30.892 hybrid contribution 0.465 1.339 -0.517 1.509 sum -0.671 -29.516 0.468 29.528 Atomic orbital electron populations 1.69816 1.06579 1.26053 1.59617 1.25601 0.96492 1.01205 1.03775 0.85063 0.78193 0.79698 0.76759 1.19106 1.22008 1.21799 1.19684 0.91483 0.85540 1.41038 0.90802 1.42661 1.05701 1.01506 1.89386 1.20915 0.94483 0.85038 0.97354 1.21631 0.97725 0.93564 1.01607 1.21094 0.97307 0.93576 0.97497 1.22006 0.99486 0.96687 0.98181 1.21548 0.91799 0.85099 1.02310 1.48186 1.40018 1.18754 1.26610 1.20601 0.83658 0.83877 0.82183 1.90791 1.45151 1.79976 1.30064 1.23016 1.05389 0.93153 1.00912 1.22298 0.79961 0.93000 0.83377 1.93094 1.92865 1.86282 1.44496 1.93072 1.39415 1.88776 1.96662 1.23285 1.02781 0.82805 0.72422 1.93049 1.97415 1.65338 1.62457 1.93065 1.95279 1.86595 1.41442 1.22173 0.93641 0.99350 0.86829 1.21966 0.97552 0.92998 1.03923 0.93949 0.79517 0.96366 0.96400 0.93045 0.91698 0.90066 0.91158 0.92842 0.89958 0.91245 0.81644 0.80490 0.78122 0.85946 0.89076 0.91607 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -38.36 5.60 -343.46 -1.92 -40.28 16 10 C 0.15 5.72 6.02 86.38 0.52 6.24 16 11 C -0.11 -3.06 4.80 30.60 0.15 -2.91 16 12 C -0.08 -1.48 2.15 -10.66 -0.02 -1.50 16 13 C -0.13 -2.75 5.16 30.78 0.16 -2.59 16 14 C 0.11 2.29 6.42 86.36 0.55 2.84 16 15 N -0.60 -9.48 2.97 -818.91 -2.43 -11.92 16 16 C 0.51 9.56 7.47 87.66 0.65 10.21 16 17 O -0.58 -17.39 14.25 -3.03 -0.04 -17.43 16 18 C -0.19 -1.46 3.52 29.85 0.11 -1.35 16 19 C 0.25 3.65 1.40 30.60 0.04 3.69 16 20 F -0.19 -3.84 16.12 44.97 0.73 -3.11 16 21 F -0.20 -4.59 16.11 44.97 0.72 -3.87 16 22 C 0.24 1.85 4.83 71.98 0.35 2.20 16 23 F -0.20 -3.03 17.30 44.97 0.78 -2.25 16 24 F -0.18 -1.61 16.80 44.97 0.76 -0.85 16 25 C 0.10 0.78 6.34 86.36 0.55 1.32 16 26 C -0.13 -1.53 5.36 30.67 0.16 -1.37 16 27 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.37 20.17 7.67 -92.70 -0.71 19.46 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.02 0.71 6.53 -2.39 -0.02 0.69 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.74 6.52 -2.39 -0.02 1.72 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.72 7.00 -2.39 -0.02 1.70 16 38 H 0.17 0.27 7.60 -2.39 -0.02 0.25 16 39 H 0.18 -0.23 7.69 -2.39 -0.02 -0.25 16 40 H 0.20 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.12 -0.01 5.93 -2.39 -0.01 -0.03 16 42 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -82.76 368.55 5.74 -77.02 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.32 Total: 13.97 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.53 Total: -0.34 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -4.08 Total: -111.49 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.04 Total: -17.43 kcal Atomic # 9 Polarization: -13.06 SS G_CDS: 2.98 Total: -10.08 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -82.76 5.74 -77.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318915160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.445 kcal (2) G-P(sol) polarization free energy of solvation -82.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds