Wall clock time and date at job start Sat Apr 11 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47273 * 240.00057 * 3 2 1 5 5 H 1.48499 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47112 * 119.99653 * 3 2 1 7 7 C 1.37880 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99462 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46806 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00020 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99765 * 0.02562 * 12 11 10 14 14 C 1.49453 * 119.99841 * 180.02562 * 12 11 10 15 15 O 1.21345 * 120.00182 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99841 * 179.97438 * 14 12 11 17 17 C 1.46496 * 120.00018 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47360 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47112 * 179.97438 * 18 17 16 20 20 C 1.39370 * 119.51084 * 270.29002 * 19 18 17 21 21 C 1.36098 * 120.99091 * 180.28202 * 20 19 18 22 22 C 1.40536 * 119.65063 * 359.71066 * 21 20 19 23 23 C 1.40540 * 121.28217 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65665 * 180.02562 * 23 22 21 25 25 C 1.39376 * 120.98533 * 359.95297 * 24 23 22 26 26 C 1.36089 * 120.99181 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.65387 * 0.02562 * 26 25 24 28 28 C 1.36095 * 119.49925 * 90.00304 * 19 18 17 29 29 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00114 * 9 7 2 31 31 H 1.09001 * 109.46949 * 299.99933 * 9 7 2 32 32 H 1.08999 * 109.47244 * 59.99997 * 10 9 7 33 33 H 1.09001 * 109.47206 * 299.99646 * 10 9 7 34 34 H 0.97002 * 119.99736 * 0.02562 * 11 10 9 35 35 H 0.97002 * 120.00244 * 0.02562 * 16 14 12 36 36 H 1.08993 * 109.47437 * 59.99928 * 17 16 14 37 37 H 1.09000 * 109.47371 * 300.00284 * 17 16 14 38 38 H 1.09006 * 109.46637 * 59.99816 * 18 17 16 39 39 H 1.09000 * 109.47090 * 300.00431 * 18 17 16 40 40 H 1.07998 * 119.50525 * 359.97438 * 20 19 18 41 41 H 1.07997 * 120.17524 * 179.73800 * 21 20 19 42 42 H 1.08002 * 120.17303 * 0.02639 * 23 22 21 43 43 H 1.07998 * 119.50902 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.50474 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.17251 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.17715 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5125 -4.9309 -0.0020 12 6 2.1864 -6.0981 -0.0024 13 8 3.3998 -6.0981 -0.0019 14 6 1.4390 -7.3923 -0.0035 15 8 0.2256 -7.3923 -0.0045 16 7 2.1128 -8.5595 -0.0044 17 6 1.3803 -9.8282 -0.0061 18 6 2.3745 -10.9912 -0.0062 19 6 1.6209 -12.2962 -0.0073 20 6 1.2717 -12.8883 1.2051 21 6 0.5961 -14.0693 1.2393 22 6 0.2385 -14.7008 0.0359 23 6 -0.4597 -15.9205 0.0312 24 6 -0.7889 -16.5034 -1.1537 25 6 -0.4449 -15.9084 -2.3661 26 6 0.2307 -14.7275 -2.4004 27 6 0.5889 -14.0961 -1.1970 28 6 1.2864 -12.8760 -1.1923 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5563 -0.8920 31 1 0.6239 -2.5574 0.8880 32 1 2.8711 -3.6048 0.8890 33 1 2.8724 -3.6041 -0.8910 34 1 0.5425 -4.9308 -0.0028 35 1 3.0828 -8.5596 -0.0040 36 1 0.7540 -9.8850 -0.8963 37 1 0.7532 -9.8868 0.8835 38 1 3.0004 -10.9342 0.8844 39 1 3.0019 -10.9328 -0.8956 40 1 1.5455 -12.4052 2.1314 41 1 0.3358 -14.5186 2.1863 42 1 -0.7336 -16.3928 0.9631 43 1 -1.3251 -17.4409 -1.1545 44 1 -0.7185 -16.3917 -3.2925 45 1 0.4903 -14.2780 -3.3475 46 1 1.5599 -12.4035 -2.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322234909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:00 Heat of formation + Delta-G solvation = -47.020261 kcal Electronic energy + Delta-G solvation = -26509.984208 eV Core-core repulsion = 22556.458823 eV Total energy + Delta-G solvation = -3953.525385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83802 -40.37824 -38.39846 -37.52014 -35.66601 -34.87725 -33.30674 -32.85496 -32.10432 -29.99601 -29.81451 -28.65927 -25.86867 -24.54680 -23.69997 -22.88140 -22.34233 -21.84210 -21.03266 -20.17941 -18.31268 -17.72439 -17.33797 -16.89795 -16.47040 -16.17190 -15.96291 -15.41908 -15.17011 -14.96361 -14.81504 -14.54117 -14.46805 -14.03866 -14.00657 -13.72184 -13.53820 -13.45028 -13.00650 -12.85702 -12.64130 -12.31951 -12.25197 -11.72902 -11.53524 -11.46071 -11.34484 -11.23938 -11.19959 -11.04742 -10.68580 -10.39119 -10.35282 -9.80270 -9.45829 -9.37806 -9.21369 -8.92398 -8.69842 -8.41479 -8.27975 -6.09939 -4.13784 0.13533 0.58977 1.61050 1.66057 2.45144 2.63689 3.30699 3.34965 3.37597 3.42770 3.70327 3.85151 4.16061 4.35100 4.40888 4.43379 4.51712 4.56566 4.61463 4.75291 4.77884 4.81582 4.96551 4.98367 5.04197 5.18161 5.26838 5.37436 5.46239 5.54653 5.62862 5.67726 5.82326 5.85182 6.06474 6.08587 6.17174 6.17856 6.21397 6.23566 6.43438 6.59162 6.60168 6.69018 7.03535 7.46424 7.57810 7.66207 7.87062 7.92210 8.21051 8.33710 8.91536 9.51068 11.01457 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032983 B = 0.001384 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.711488 B =20219.179716 C =20426.759533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.534 6.534 14 C 0.508 3.492 15 O -0.519 6.519 16 N -0.707 5.707 17 C 0.123 3.877 18 C -0.095 4.095 19 C -0.076 4.076 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.054 4.054 23 C -0.107 4.107 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.105 4.105 27 C -0.050 4.050 28 C -0.099 4.099 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -35.092 -1.013 35.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.277 3.723 13 O -0.412 6.412 14 C 0.289 3.711 15 O -0.394 6.394 16 N -0.362 5.362 17 C 0.000 4.000 18 C -0.132 4.132 19 C -0.076 4.076 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.054 4.054 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.050 4.050 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.699 -34.929 -1.013 34.951 hybrid contribution 0.329 0.857 -0.002 0.918 sum 1.028 -34.072 -1.015 34.103 Atomic orbital electron populations 1.69954 1.06094 1.27056 1.49937 1.24999 0.94898 0.99423 0.94905 0.86551 0.79491 0.82603 0.78753 1.20104 1.21226 1.20109 1.20976 0.93184 0.90260 1.51907 0.92217 1.19356 0.94192 0.90855 0.98261 1.21941 0.96278 0.80754 1.01340 1.46239 1.11807 1.05801 1.69805 1.19966 0.87703 0.85253 0.79403 1.90727 1.13220 1.87547 1.49743 1.20460 0.87737 0.85563 0.77390 1.90765 1.13467 1.87662 1.47498 1.45743 1.11458 1.04917 1.74058 1.21416 0.94391 0.80886 1.03328 1.20844 0.97362 0.90682 1.04358 1.19340 0.98980 0.96053 0.93245 1.20804 0.98417 0.95659 0.97624 1.21026 0.98521 0.95632 0.97093 1.18130 0.98864 0.95362 0.93009 1.21051 0.98208 0.94638 0.98557 1.20872 1.00111 1.00153 0.92492 1.20876 0.98702 0.95916 0.98135 1.21067 0.98435 0.95662 0.97140 1.18082 0.98745 0.95159 0.92998 1.20956 0.98207 0.94499 0.98081 0.92722 0.95650 0.95651 0.91848 0.91847 0.75370 0.75087 0.90778 0.90751 0.89731 0.89789 0.85654 0.85422 0.85592 0.86004 0.85961 0.85489 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.69 -12.48 5.55 -60.73 -0.34 -12.82 16 12 C 0.50 8.49 7.89 -11.59 -0.09 8.40 16 13 O -0.53 -9.96 16.48 5.50 0.09 -9.87 16 14 C 0.51 7.52 7.89 -11.59 -0.09 7.42 16 15 O -0.52 -8.81 16.48 5.50 0.09 -8.72 16 16 N -0.71 -7.74 5.55 -60.73 -0.34 -8.08 16 17 C 0.12 1.10 5.66 -4.04 -0.02 1.08 16 18 C -0.09 -0.60 5.42 -27.88 -0.15 -0.75 16 19 C -0.08 -0.56 5.10 -104.97 -0.54 -1.09 16 20 C -0.11 -0.76 9.59 -39.93 -0.38 -1.15 16 21 C -0.10 -0.76 9.77 -39.48 -0.39 -1.14 16 22 C -0.05 -0.44 5.74 -106.84 -0.61 -1.05 16 23 C -0.11 -0.73 9.77 -39.49 -0.39 -1.12 16 24 C -0.12 -0.74 9.95 -39.93 -0.40 -1.14 16 25 C -0.12 -0.76 9.95 -39.93 -0.40 -1.15 16 26 C -0.11 -0.75 9.77 -39.49 -0.39 -1.14 16 27 C -0.05 -0.42 5.74 -106.83 -0.61 -1.03 16 28 C -0.10 -0.76 9.37 -39.48 -0.37 -1.13 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.41 7.15 7.94 -40.82 -0.32 6.83 16 35 H 0.41 3.93 7.95 -40.82 -0.32 3.60 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 39 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -32.82 398.41 -10.70 -43.52 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.53 Total: 4.67 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -5.40 Total: -5.57 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.06 Total: -46.24 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.82 -10.70 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322234909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.504 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds