Wall clock time and date at job start Sat Apr 11 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47273 * 240.00057 * 3 2 1 5 5 H 1.48499 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47112 * 119.99653 * 3 2 1 7 7 C 1.37880 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99462 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99995 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46806 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00020 * 179.97438 * 11 10 9 13 13 O 1.21348 * 119.99765 * 0.02562 * 12 11 10 14 14 C 1.49453 * 119.99841 * 180.02562 * 12 11 10 15 15 O 1.21345 * 120.00182 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99841 * 179.97438 * 14 12 11 17 17 C 1.46496 * 120.00018 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47360 * 180.02562 * 17 16 14 19 19 C 1.50696 * 109.47112 * 179.97438 * 18 17 16 20 20 C 1.39370 * 119.51084 * 270.29002 * 19 18 17 21 21 C 1.36098 * 120.99091 * 180.28202 * 20 19 18 22 22 C 1.40536 * 119.65063 * 359.71066 * 21 20 19 23 23 C 1.40540 * 121.28217 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65665 * 180.02562 * 23 22 21 25 25 C 1.39376 * 120.98533 * 359.95297 * 24 23 22 26 26 C 1.36089 * 120.99181 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.65387 * 0.02562 * 26 25 24 28 28 C 1.36095 * 119.49925 * 90.00304 * 19 18 17 29 29 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00114 * 9 7 2 31 31 H 1.09001 * 109.46949 * 299.99933 * 9 7 2 32 32 H 1.08999 * 109.47244 * 59.99997 * 10 9 7 33 33 H 1.09001 * 109.47206 * 299.99646 * 10 9 7 34 34 H 0.97002 * 119.99736 * 0.02562 * 11 10 9 35 35 H 0.97002 * 120.00244 * 0.02562 * 16 14 12 36 36 H 1.08993 * 109.47437 * 59.99928 * 17 16 14 37 37 H 1.09000 * 109.47371 * 300.00284 * 17 16 14 38 38 H 1.09006 * 109.46637 * 59.99816 * 18 17 16 39 39 H 1.09000 * 109.47090 * 300.00431 * 18 17 16 40 40 H 1.07998 * 119.50525 * 359.97438 * 20 19 18 41 41 H 1.07997 * 120.17524 * 179.73800 * 21 20 19 42 42 H 1.08002 * 120.17303 * 0.02639 * 23 22 21 43 43 H 1.07998 * 119.50902 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.50474 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.17251 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.17715 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5125 -4.9309 -0.0020 12 6 2.1864 -6.0981 -0.0024 13 8 3.3998 -6.0981 -0.0019 14 6 1.4390 -7.3923 -0.0035 15 8 0.2256 -7.3923 -0.0045 16 7 2.1128 -8.5595 -0.0044 17 6 1.3803 -9.8282 -0.0061 18 6 2.3745 -10.9912 -0.0062 19 6 1.6209 -12.2962 -0.0073 20 6 1.2717 -12.8883 1.2051 21 6 0.5961 -14.0693 1.2393 22 6 0.2385 -14.7008 0.0359 23 6 -0.4597 -15.9205 0.0312 24 6 -0.7889 -16.5034 -1.1537 25 6 -0.4449 -15.9084 -2.3661 26 6 0.2307 -14.7275 -2.4004 27 6 0.5889 -14.0961 -1.1970 28 6 1.2864 -12.8760 -1.1923 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5563 -0.8920 31 1 0.6239 -2.5574 0.8880 32 1 2.8711 -3.6048 0.8890 33 1 2.8724 -3.6041 -0.8910 34 1 0.5425 -4.9308 -0.0028 35 1 3.0828 -8.5596 -0.0040 36 1 0.7540 -9.8850 -0.8963 37 1 0.7532 -9.8868 0.8835 38 1 3.0004 -10.9342 0.8844 39 1 3.0019 -10.9328 -0.8956 40 1 1.5455 -12.4052 2.1314 41 1 0.3358 -14.5186 2.1863 42 1 -0.7336 -16.3928 0.9631 43 1 -1.3251 -17.4409 -1.1545 44 1 -0.7185 -16.3917 -3.2925 45 1 0.4903 -14.2780 -3.3475 46 1 1.5599 -12.4035 -2.1241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322234909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:59 Heat of formation + Delta-G solvation = -66.873442 kcal Electronic energy + Delta-G solvation = -26510.845107 eV Core-core repulsion = 22556.458823 eV Total energy + Delta-G solvation = -3954.386284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71923 -41.27172 -39.68291 -38.13250 -36.94627 -36.14896 -34.82291 -33.85233 -32.74096 -31.68838 -30.49819 -29.35667 -27.40978 -25.77566 -24.30198 -23.96393 -22.84308 -22.77954 -22.45407 -21.43727 -19.60025 -18.58006 -18.22214 -17.92463 -17.75484 -17.21923 -16.93775 -16.58545 -16.44056 -16.11155 -16.07706 -15.59345 -15.29555 -14.98502 -14.91103 -14.52121 -14.46858 -14.29525 -14.19176 -14.07000 -13.50364 -13.27711 -13.25588 -12.92262 -12.87024 -12.72654 -12.54057 -12.31270 -12.26475 -11.98101 -11.85045 -11.68276 -11.67331 -11.45244 -10.87724 -10.70943 -10.60363 -10.36425 -10.19226 -9.45174 -8.78319 -8.22704 -6.34137 -0.36711 0.06542 0.31885 1.13419 1.32051 1.44362 1.46233 1.54415 2.06843 2.11946 2.40685 2.68840 3.12271 3.18328 3.42418 3.67945 3.83251 3.95808 3.98610 4.05739 4.09211 4.26348 4.35469 4.39102 4.45708 4.46617 4.48784 4.52412 4.63237 4.81627 4.85809 4.90469 4.97091 5.06141 5.08194 5.15078 5.20964 5.34100 5.37219 5.42563 5.55221 5.57795 5.66503 5.69715 5.75675 5.92059 5.95422 6.12256 6.13308 6.36440 6.70964 6.80080 6.92792 7.35470 8.89034 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032983 B = 0.001384 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.711488 B =20219.179716 C =20426.759533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.138 3.862 11 N -0.689 5.689 12 C 0.501 3.499 13 O -0.548 6.548 14 C 0.513 3.487 15 O -0.544 6.544 16 N -0.685 5.685 17 C 0.124 3.876 18 C -0.083 4.083 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.075 4.075 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.072 4.072 28 C -0.110 4.110 29 H 0.265 0.735 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -36.180 -0.966 36.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.340 5.340 12 C 0.281 3.719 13 O -0.427 6.427 14 C 0.294 3.706 15 O -0.421 6.421 16 N -0.339 5.339 17 C 0.001 3.999 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.135 4.135 21 C -0.131 4.131 22 C -0.075 4.075 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.072 4.072 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.250 0.750 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.793 -36.068 -0.966 36.125 hybrid contribution -0.022 1.060 -0.031 1.061 sum 1.771 -35.008 -0.996 35.067 Atomic orbital electron populations 1.70078 1.07716 1.28066 1.50878 1.25915 0.95757 1.03269 0.94372 0.85456 0.78213 0.77904 0.79218 1.19175 1.20889 1.19177 1.21430 0.93780 0.91555 1.51713 0.91646 1.19182 0.94373 0.91973 0.96441 1.21485 0.95072 0.80738 1.01205 1.46083 1.11922 1.05522 1.70505 1.20321 0.87557 0.85690 0.78303 1.90716 1.13892 1.87889 1.50158 1.19972 0.87185 0.85559 0.77929 1.90767 1.14256 1.87800 1.49311 1.45704 1.12004 1.04448 1.71738 1.21545 0.94926 0.80497 1.02899 1.20775 0.96690 0.88908 1.05719 1.19454 0.99190 0.96364 0.93304 1.21051 0.98419 0.95832 0.98211 1.21292 0.98366 0.95783 0.97609 1.18449 0.99493 0.96177 0.93417 1.21339 0.98105 0.94436 0.99699 1.21208 0.99854 1.00903 0.92289 1.21204 0.98108 0.95724 0.99174 1.21317 0.98891 0.96211 0.97420 1.18372 0.99383 0.95771 0.93660 1.21165 0.98294 0.94577 0.98781 0.92601 0.97439 0.97434 0.91939 0.91947 0.74969 0.73953 0.91313 0.91115 0.88304 0.88550 0.84218 0.83734 0.83869 0.83875 0.84008 0.84265 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.29 21.45 0.28 -54.55 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 0.90 5.09 29.85 0.15 1.05 16 10 C 0.14 5.75 5.61 86.38 0.48 6.24 16 11 N -0.69 -25.08 5.55 -464.40 -2.58 -27.65 16 12 C 0.50 16.72 7.89 87.27 0.69 17.41 16 13 O -0.55 -19.78 16.48 -3.24 -0.05 -19.83 16 14 C 0.51 14.72 7.89 87.27 0.69 15.40 16 15 O -0.54 -18.22 16.48 -3.23 -0.05 -18.28 16 16 N -0.69 -13.87 5.55 -464.42 -2.58 -16.44 16 17 C 0.12 2.03 5.66 86.38 0.49 2.52 16 18 C -0.08 -0.90 5.42 29.85 0.16 -0.73 16 19 C -0.08 -1.12 5.10 -20.09 -0.10 -1.22 16 20 C -0.12 -1.54 9.59 22.04 0.21 -1.33 16 21 C -0.11 -1.54 9.77 22.33 0.22 -1.32 16 22 C -0.08 -1.20 5.74 -21.30 -0.12 -1.33 16 23 C -0.12 -1.52 9.77 22.33 0.22 -1.30 16 24 C -0.12 -1.41 9.95 22.04 0.22 -1.20 16 25 C -0.12 -1.47 9.95 22.04 0.22 -1.25 16 26 C -0.12 -1.67 9.77 22.33 0.22 -1.45 16 27 C -0.07 -1.19 5.74 -21.29 -0.12 -1.31 16 28 C -0.11 -1.62 9.37 22.33 0.21 -1.41 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.02 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.41 14.61 7.94 -92.71 -0.74 13.88 16 35 H 0.42 7.11 7.95 -92.71 -0.74 6.38 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.10 0.81 8.08 -2.38 -0.02 0.79 16 39 H 0.10 0.82 8.07 -2.39 -0.02 0.81 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 45 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 46 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -69.94 398.41 1.11 -68.83 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.46 Total: 23.01 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.53 Total: -0.34 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.87 Total: -98.65 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -69.94 1.11 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322234909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.955 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds