Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00352 * 2 1 4 4 H 1.48499 * 109.46905 * 270.00464 * 3 2 1 5 5 H 1.48504 * 109.46823 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00458 * 3 2 1 7 7 C 1.38818 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99622 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99610 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46901 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47322 * 55.00744 * 11 10 9 13 13 C 1.52997 * 109.47140 * 295.00287 * 11 10 9 14 14 C 1.53001 * 109.47140 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46974 * 59.99759 * 14 13 11 16 16 C 1.52997 * 109.47383 * 300.00092 * 15 14 13 17 17 C 1.53002 * 109.46939 * 175.00431 * 11 10 9 18 18 H 1.08997 * 109.47739 * 60.00183 * 17 11 10 19 19 N 1.46507 * 109.47234 * 299.99872 * 17 11 10 20 20 C 1.34775 * 119.99901 * 155.00300 * 19 17 11 21 21 O 1.21279 * 120.00300 * 359.97438 * 20 19 17 22 22 C 1.50703 * 119.99773 * 180.02562 * 20 19 17 23 23 C 1.52996 * 109.47130 * 179.97438 * 22 20 19 24 24 F 1.39900 * 109.46759 * 60.00172 * 23 22 20 25 25 F 1.39897 * 109.47130 * 300.00196 * 23 22 20 26 26 C 1.52997 * 109.47131 * 179.97438 * 23 22 20 27 27 F 1.39905 * 109.47157 * 180.02562 * 26 23 22 28 28 F 1.39900 * 109.47010 * 60.00508 * 26 23 22 29 29 H 0.97004 * 119.99486 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00287 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46982 * 60.00521 * 10 9 7 32 32 H 1.09000 * 109.47528 * 300.00385 * 10 9 7 33 33 H 1.08997 * 109.47072 * 299.99531 * 13 11 10 34 34 H 1.08999 * 109.47103 * 60.00157 * 13 11 10 35 35 H 1.08992 * 109.47542 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47322 * 300.00457 * 14 13 11 37 37 H 1.08998 * 109.46741 * 60.00707 * 15 14 13 38 38 H 1.09005 * 109.46920 * 180.02562 * 15 14 13 39 39 H 1.08999 * 109.46774 * 300.00032 * 16 15 14 40 40 H 1.08999 * 109.47103 * 179.97438 * 16 15 14 41 41 H 0.97005 * 119.99489 * 335.00057 * 19 17 11 42 42 H 1.09001 * 109.46980 * 59.99839 * 22 20 19 43 43 H 1.08996 * 109.46805 * 299.99819 * 22 20 19 44 44 H 1.09004 * 109.47261 * 300.00306 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0011 12 1 5.8658 -1.5457 0.8408 13 6 6.0063 -1.4989 -1.3084 14 6 7.5104 -1.2188 -1.3081 15 6 8.2748 -2.5382 -1.1821 16 6 7.8848 -3.2308 0.1252 17 6 6.3801 -3.5112 0.1245 18 1 6.1307 -4.1571 -0.7173 19 7 6.0067 -4.1744 1.3764 20 6 6.1244 -5.5121 1.4914 21 8 6.5390 -6.1669 0.5585 22 6 5.7397 -6.1944 2.7789 23 6 5.9669 -7.7014 2.6451 24 9 7.3169 -7.9470 2.3725 25 9 5.1818 -8.2005 1.6002 26 6 5.5769 -8.3940 3.9524 27 9 5.7852 -9.7721 3.8303 28 9 4.2270 -8.1485 4.2256 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.8483 -3.0427 -0.8909 32 1 3.8489 -3.0425 0.8891 33 1 5.7568 -2.1448 -2.1502 34 1 5.4620 -0.5588 -1.3979 35 1 7.7883 -0.7250 -2.2392 36 1 7.7596 -0.5728 -0.4662 37 1 8.0257 -3.1842 -2.0239 38 1 9.3464 -2.3386 -1.1814 39 1 8.1339 -2.5847 0.9670 40 1 8.4290 -4.1709 0.2147 41 1 5.6748 -3.6507 2.1224 42 1 4.6877 -6.0033 2.9911 43 1 6.3511 -5.8052 3.5930 44 1 6.1889 -8.0051 4.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322355472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -241.793086 kcal Electronic energy + Delta-G solvation = -30939.005930 eV Core-core repulsion = 26004.408597 eV Total energy + Delta-G solvation = -4934.597334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.16627 -48.91874 -47.79842 -47.29698 -40.29612 -38.40809 -34.86658 -34.33172 -33.19656 -31.99710 -30.10692 -29.79453 -27.82781 -25.50172 -23.37148 -22.74500 -22.00045 -20.83262 -20.60641 -19.93543 -18.87330 -18.72449 -18.17251 -17.69855 -17.08906 -16.79983 -16.72156 -15.92699 -15.49009 -14.83349 -14.78274 -14.64529 -14.50535 -14.38246 -14.12707 -14.07309 -13.99820 -13.83358 -13.71193 -13.49282 -13.25937 -13.11000 -12.82249 -12.79357 -12.55216 -12.46382 -12.11434 -11.76548 -11.29597 -11.26702 -11.11480 -11.02999 -10.86489 -10.59553 -10.42814 -10.20585 -10.12102 -9.95022 -9.62097 -9.10138 -8.92385 -7.27378 -5.80550 -3.16404 2.16686 2.37570 2.85717 3.17902 3.31877 3.33596 3.34865 3.41089 3.50388 3.59976 4.22007 4.32597 4.45176 4.54568 4.61554 4.74372 4.79128 4.88923 4.93378 5.06173 5.19133 5.40409 5.46135 5.47953 5.50980 5.55690 5.70653 5.76876 5.97021 6.00652 6.07928 6.12614 6.19860 6.35903 6.38418 6.44568 6.59024 6.73387 7.29532 7.95709 7.99138 8.38336 9.17264 9.89327 10.08987 11.37907 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.003123 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.820916 B = 8964.175899 C =10888.698839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.163 3.837 11 C -0.104 4.104 12 H 0.075 0.925 13 C -0.109 4.109 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.091 0.909 19 N -0.715 5.715 20 C 0.519 3.481 21 O -0.522 6.522 22 C -0.197 4.197 23 C 0.272 3.728 24 F -0.169 7.169 25 F -0.167 7.167 26 C 0.235 3.765 27 F -0.182 7.182 28 F -0.178 7.178 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.404 0.596 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.873 -11.691 8.815 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.124 4.124 12 H 0.093 0.907 13 C -0.147 4.147 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.050 3.950 18 H 0.110 0.890 19 N -0.366 5.366 20 C 0.303 3.697 21 O -0.398 6.398 22 C -0.237 4.237 23 C 0.234 3.766 24 F -0.150 7.150 25 F -0.148 7.148 26 C 0.181 3.819 27 F -0.163 7.163 28 F -0.159 7.159 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.908 -12.301 8.096 23.966 hybrid contribution 0.209 1.357 0.344 1.415 sum 19.117 -10.944 8.440 23.589 Atomic orbital electron populations 1.69704 1.05117 1.25823 1.57490 1.24675 0.95215 0.97163 1.02038 0.86563 0.79144 0.85058 0.77823 1.21033 1.21726 1.20394 1.19054 0.80642 0.94711 1.43071 0.89294 1.42709 1.04003 1.02114 1.91184 1.20645 0.87758 0.89290 0.98771 1.21657 0.96516 0.95023 0.99182 0.90677 1.21514 0.94992 1.01361 0.96836 1.21607 0.95592 0.97032 1.01747 1.21482 0.99536 0.96823 0.97466 1.21906 0.95544 1.00704 0.98319 1.21044 0.93751 0.93701 0.86456 0.89046 1.45975 1.66492 1.06563 1.17536 1.19770 0.78532 0.82890 0.88489 1.90807 1.44959 1.64269 1.39757 1.22846 1.08356 0.91661 1.00845 1.21537 0.75497 0.94113 0.85468 1.93120 1.32175 1.95325 1.94351 1.93153 1.73496 1.88638 1.59525 1.22838 0.81823 0.79179 0.98107 1.93083 1.94641 1.31637 1.96987 1.93090 1.34539 1.93849 1.94444 0.93034 0.80643 0.95442 0.95611 0.91495 0.90897 0.91943 0.92082 0.91708 0.92016 0.91872 0.91610 0.76109 0.84453 0.85075 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 7 C -0.24 -6.79 10.47 -15.05 -0.16 -6.95 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.05 5.13 -59.91 -0.31 -17.36 16 10 C 0.16 2.94 5.57 -4.04 -0.02 2.92 16 11 C -0.10 -1.42 1.80 -90.62 -0.16 -1.59 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.11 -1.46 5.08 -26.73 -0.14 -1.59 16 14 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 15 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 16 C -0.13 -1.33 5.50 -26.70 -0.15 -1.48 16 17 C 0.15 1.88 1.90 -67.90 -0.13 1.75 16 18 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 19 N -0.71 -7.58 4.30 -53.77 -0.23 -7.82 16 20 C 0.52 6.03 7.56 -10.98 -0.08 5.95 16 21 O -0.52 -8.25 14.50 5.56 0.08 -8.17 16 22 C -0.20 -1.47 5.17 -27.88 -0.14 -1.62 16 23 C 0.27 2.65 1.40 -26.73 -0.04 2.61 16 24 F -0.17 -1.91 16.12 2.25 0.04 -1.87 16 25 F -0.17 -2.29 16.11 2.25 0.04 -2.25 16 26 C 0.24 1.65 4.83 37.16 0.18 1.83 16 27 F -0.18 -1.76 17.30 2.25 0.04 -1.72 16 28 F -0.18 -1.51 16.80 2.25 0.04 -1.47 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.36 7.90 4.71 -40.82 -0.19 7.71 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.46 7.30 -51.93 -0.38 0.08 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.10 7.18 -51.93 -0.37 0.73 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.44 8.39 -40.82 -0.34 3.10 16 42 H 0.14 0.85 7.80 -51.93 -0.41 0.45 16 43 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -35.39 368.23 -6.28 -41.67 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.33 Total: 5.76 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.25 Total: -0.90 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.24 Total: -53.41 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.15 Total: -7.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.39 -6.28 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322355472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.127 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds