Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00352 * 2 1 4 4 H 1.48499 * 109.46905 * 270.00464 * 3 2 1 5 5 H 1.48504 * 109.46823 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.46984 * 150.00458 * 3 2 1 7 7 C 1.38818 * 119.99565 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00271 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99622 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99610 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46901 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47322 * 55.00744 * 11 10 9 13 13 C 1.52997 * 109.47140 * 295.00287 * 11 10 9 14 14 C 1.53001 * 109.47140 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46974 * 59.99759 * 14 13 11 16 16 C 1.52997 * 109.47383 * 300.00092 * 15 14 13 17 17 C 1.53002 * 109.46939 * 175.00431 * 11 10 9 18 18 H 1.08997 * 109.47739 * 60.00183 * 17 11 10 19 19 N 1.46507 * 109.47234 * 299.99872 * 17 11 10 20 20 C 1.34775 * 119.99901 * 155.00300 * 19 17 11 21 21 O 1.21279 * 120.00300 * 359.97438 * 20 19 17 22 22 C 1.50703 * 119.99773 * 180.02562 * 20 19 17 23 23 C 1.52996 * 109.47130 * 179.97438 * 22 20 19 24 24 F 1.39900 * 109.46759 * 60.00172 * 23 22 20 25 25 F 1.39897 * 109.47130 * 300.00196 * 23 22 20 26 26 C 1.52997 * 109.47131 * 179.97438 * 23 22 20 27 27 F 1.39905 * 109.47157 * 180.02562 * 26 23 22 28 28 F 1.39900 * 109.47010 * 60.00508 * 26 23 22 29 29 H 0.97004 * 119.99486 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00287 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46982 * 60.00521 * 10 9 7 32 32 H 1.09000 * 109.47528 * 300.00385 * 10 9 7 33 33 H 1.08997 * 109.47072 * 299.99531 * 13 11 10 34 34 H 1.08999 * 109.47103 * 60.00157 * 13 11 10 35 35 H 1.08992 * 109.47542 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47322 * 300.00457 * 14 13 11 37 37 H 1.08998 * 109.46741 * 60.00707 * 15 14 13 38 38 H 1.09005 * 109.46920 * 180.02562 * 15 14 13 39 39 H 1.08999 * 109.46774 * 300.00032 * 16 15 14 40 40 H 1.08999 * 109.47103 * 179.97438 * 16 15 14 41 41 H 0.97005 * 119.99489 * 335.00057 * 19 17 11 42 42 H 1.09001 * 109.46980 * 59.99839 * 22 20 19 43 43 H 1.08996 * 109.46805 * 299.99819 * 22 20 19 44 44 H 1.09004 * 109.47261 * 300.00306 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0011 12 1 5.8658 -1.5457 0.8408 13 6 6.0063 -1.4989 -1.3084 14 6 7.5104 -1.2188 -1.3081 15 6 8.2748 -2.5382 -1.1821 16 6 7.8848 -3.2308 0.1252 17 6 6.3801 -3.5112 0.1245 18 1 6.1307 -4.1571 -0.7173 19 7 6.0067 -4.1744 1.3764 20 6 6.1244 -5.5121 1.4914 21 8 6.5390 -6.1669 0.5585 22 6 5.7397 -6.1944 2.7789 23 6 5.9669 -7.7014 2.6451 24 9 7.3169 -7.9470 2.3725 25 9 5.1818 -8.2005 1.6002 26 6 5.5769 -8.3940 3.9524 27 9 5.7852 -9.7721 3.8303 28 9 4.2270 -8.1485 4.2256 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3623 -0.0007 31 1 3.8483 -3.0427 -0.8909 32 1 3.8489 -3.0425 0.8891 33 1 5.7568 -2.1448 -2.1502 34 1 5.4620 -0.5588 -1.3979 35 1 7.7883 -0.7250 -2.2392 36 1 7.7596 -0.5728 -0.4662 37 1 8.0257 -3.1842 -2.0239 38 1 9.3464 -2.3386 -1.1814 39 1 8.1339 -2.5847 0.9670 40 1 8.4290 -4.1709 0.2147 41 1 5.6748 -3.6507 2.1224 42 1 4.6877 -6.0033 2.9911 43 1 6.3511 -5.8052 3.5930 44 1 6.1889 -8.0051 4.7663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322355472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -265.946522 kcal Electronic energy + Delta-G solvation = -30940.053302 eV Core-core repulsion = 26004.408597 eV Total energy + Delta-G solvation = -4935.644705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.86337 -49.63351 -48.51274 -48.06831 -41.26818 -39.44790 -36.57969 -35.28442 -33.90875 -33.82027 -31.62261 -30.72005 -28.54239 -27.02440 -24.47532 -24.02736 -22.96360 -22.11456 -21.56379 -20.88136 -19.80711 -19.53320 -19.40004 -18.78245 -17.76680 -17.64596 -17.60648 -16.85045 -16.61636 -16.32420 -16.00646 -15.57626 -15.53210 -15.26802 -15.13712 -15.03474 -14.77586 -14.75570 -14.65830 -14.60077 -14.58049 -14.34482 -13.93406 -13.73572 -13.68340 -13.36184 -13.18788 -13.01078 -12.78517 -12.67641 -12.20024 -12.12976 -11.94634 -11.90251 -11.84120 -11.55573 -11.38046 -11.19161 -11.01770 -10.88166 -10.05024 -9.29587 -8.02589 -5.36681 1.37764 1.42811 1.49807 1.50171 1.54500 2.08784 2.48959 2.52520 2.80649 2.91717 3.01032 3.28894 3.41016 3.68912 3.71859 3.74519 3.79180 3.86241 3.99141 4.23409 4.27640 4.30047 4.35155 4.43172 4.45255 4.51625 4.54942 4.83659 4.86526 5.03119 5.09321 5.14652 5.22273 5.28475 5.29386 5.39235 5.46511 5.58670 5.75220 6.20893 6.45082 7.08191 7.15052 7.83039 8.04115 9.19150 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.003123 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.820916 B = 8964.175899 C =10888.698839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.243 1.243 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.752 5.752 10 C 0.161 3.839 11 C -0.089 4.089 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.116 4.116 17 C 0.160 3.840 18 H 0.062 0.938 19 N -0.708 5.708 20 C 0.511 3.489 21 O -0.572 6.572 22 C -0.188 4.188 23 C 0.254 3.746 24 F -0.181 7.181 25 F -0.200 7.200 26 C 0.240 3.760 27 F -0.201 7.201 28 F -0.187 7.187 29 H 0.258 0.742 30 H 0.368 0.632 31 H 0.005 0.995 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.417 0.583 42 H 0.153 0.847 43 H 0.185 0.815 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.813 -10.101 10.935 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.167 1.167 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.398 5.398 10 C 0.035 3.965 11 C -0.108 4.108 12 H 0.112 0.888 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.155 4.155 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.360 5.360 20 C 0.298 3.702 21 O -0.451 6.451 22 C -0.228 4.228 23 C 0.216 3.784 24 F -0.162 7.162 25 F -0.181 7.181 26 C 0.186 3.814 27 F -0.182 7.182 28 F -0.168 7.168 29 H 0.067 0.933 30 H 0.202 0.798 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.255 0.745 42 H 0.170 0.830 43 H 0.202 0.798 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 21.888 -10.724 10.242 26.439 hybrid contribution -0.767 0.741 -0.377 1.132 sum 21.121 -9.982 9.866 25.359 Atomic orbital electron populations 1.69903 1.07353 1.26772 1.59555 1.25553 0.96107 1.01447 1.02415 0.85390 0.78951 0.79213 0.78126 1.20647 1.22287 1.16704 1.18999 0.82900 0.93272 1.41624 0.93207 1.42634 1.02236 1.04042 1.90898 1.20771 0.90659 0.87309 0.97794 1.21513 0.92963 0.96179 1.00160 0.88811 1.21524 0.97192 1.00159 0.96147 1.21550 0.93111 0.97549 1.02915 1.21486 1.00667 0.96230 0.96774 1.21824 0.93527 1.00749 0.99392 1.20860 0.94986 0.92254 0.86412 0.92025 1.45916 1.66083 1.06618 1.17333 1.20488 0.77486 0.82851 0.89399 1.90790 1.47218 1.65239 1.41818 1.22959 1.10240 0.89659 0.99922 1.22219 0.74556 0.95876 0.85768 1.93086 1.33056 1.95537 1.94542 1.93081 1.74352 1.89237 1.61473 1.23334 0.82007 0.78023 0.98083 1.93044 1.94718 1.33336 1.97068 1.93073 1.35616 1.93789 1.94323 0.93323 0.79771 0.97720 0.95054 0.92819 0.92409 0.91008 0.90666 0.92833 0.89983 0.89849 0.92485 0.74548 0.82954 0.79801 0.77831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.81 13.97 21.65 0.30 -62.51 16 2 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 43.84 27.74 68.60 1.90 45.74 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.24 -9.64 6.52 99.48 0.65 -8.99 16 7 C -0.24 -13.35 10.47 84.03 0.88 -12.47 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -33.41 5.13 -343.45 -1.76 -35.18 16 10 C 0.16 5.78 5.57 86.38 0.48 6.26 16 11 C -0.09 -2.26 1.80 -10.79 -0.02 -2.28 16 12 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 13 C -0.11 -2.83 5.08 30.59 0.16 -2.68 16 14 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 15 C -0.11 -2.00 5.92 30.59 0.18 -1.82 16 16 C -0.12 -2.17 5.50 30.61 0.17 -2.00 16 17 C 0.16 3.69 1.90 45.01 0.09 3.78 16 18 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 19 N -0.71 -13.74 4.30 -442.43 -1.90 -15.65 16 20 C 0.51 11.32 7.56 87.66 0.66 11.99 16 21 O -0.57 -18.36 14.50 -3.03 -0.04 -18.40 16 22 C -0.19 -2.33 5.17 29.85 0.15 -2.18 16 23 C 0.25 4.62 1.40 30.59 0.04 4.66 16 24 F -0.18 -3.95 16.12 44.97 0.73 -3.22 16 25 F -0.20 -5.65 16.11 44.97 0.72 -4.92 16 26 C 0.24 2.79 4.83 71.98 0.35 3.14 16 27 F -0.20 -3.64 17.30 44.97 0.78 -2.87 16 28 F -0.19 -2.79 16.80 44.97 0.76 -2.04 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.37 15.26 4.71 -92.71 -0.44 14.82 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.03 1.10 7.30 -2.39 -0.02 1.08 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.64 7.18 -2.39 -0.02 1.62 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.42 5.85 8.39 -92.70 -0.78 5.07 16 42 H 0.15 1.48 7.80 -2.39 -0.02 1.46 16 43 H 0.18 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.21 -0.11 8.14 -2.38 -0.02 -0.13 16 Total: -1.00 -82.21 368.23 5.03 -77.17 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.23 Total: 20.64 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 3.79 Total: 1.23 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -3.37 Total: -113.34 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.04 Total: -18.40 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 2.98 Total: -13.05 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Total: -82.21 5.03 -77.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322355472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.772 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds