Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47155 * 274.99676 * 3 2 1 5 5 H 1.48501 * 109.47049 * 34.99438 * 3 2 1 6 6 H 1.48499 * 109.46990 * 154.99804 * 3 2 1 7 7 C 1.37873 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00005 * 175.45969 * 7 2 1 9 9 C 1.50705 * 120.00571 * 355.46632 * 7 2 1 10 10 C 1.53032 * 109.46163 * 185.85252 * 9 7 2 11 11 C 1.53193 * 109.31472 * 178.62654 * 10 9 7 12 12 N 1.46928 * 108.77405 * 54.62929 * 11 10 9 13 13 C 1.34778 * 120.62868 * 126.36862 * 12 11 10 14 14 O 1.21350 * 119.99890 * 2.28512 * 13 12 11 15 15 C 1.49451 * 120.00194 * 182.28208 * 13 12 11 16 16 O 1.21352 * 119.99914 * 353.21393 * 15 13 12 17 17 N 1.34779 * 120.00033 * 173.21889 * 15 13 12 18 18 C 1.46504 * 119.99665 * 179.72509 * 17 15 13 19 19 C 1.47196 * 109.46639 * 180.27411 * 18 17 15 20 20 C 9.61710 * 123.34955 * 233.97063 * 9 1 2 21 21 C 9.44265 * 118.73699 * 247.17673 * 11 1 2 22 22 C 1.39540 * 120.13781 * 75.66508 * 21 20 19 23 23 C 1.37976 * 119.84923 * 179.78605 * 22 21 20 24 24 C 1.38344 * 120.14277 * 0.46257 * 23 22 21 25 25 C 1.38340 * 120.28748 * 359.78984 * 24 23 22 26 26 C 1.37978 * 120.14429 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.74085 * 306.65101 * 12 11 10 28 28 C 1.52757 * 109.01093 * 53.30676 * 27 12 11 29 29 H 0.97002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.45366 * 305.82387 * 9 7 2 31 31 H 1.08997 * 109.50211 * 58.67498 * 10 9 7 32 32 H 1.09003 * 109.52539 * 298.59292 * 10 9 7 33 33 H 1.08997 * 109.58560 * 294.84808 * 11 10 9 34 34 H 1.08998 * 109.70795 * 174.48652 * 11 10 9 35 35 H 0.96997 * 119.99843 * 359.97438 * 17 15 13 36 36 H 1.09000 * 109.46877 * 300.26713 * 18 17 15 37 37 H 1.08997 * 109.46985 * 60.27284 * 18 17 15 38 38 H 1.07993 * 120.07272 * 0.02562 * 22 21 20 39 39 H 1.08003 * 119.92371 * 180.25182 * 23 22 21 40 40 H 1.08002 * 119.85235 * 179.76013 * 24 23 22 41 41 H 1.07999 * 119.92606 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.07190 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.58210 * 173.14234 * 27 12 11 44 44 H 1.09002 * 109.58503 * 293.56189 * 27 12 11 45 45 H 1.08997 * 109.56809 * 185.55400 * 28 27 12 46 46 H 1.09004 * 109.38824 * 65.51271 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1956 -0.0735 9 6 1.2545 -2.4971 0.1043 10 6 2.2520 -3.6509 0.2296 11 6 1.4859 -4.9701 0.3693 12 7 0.5542 -5.0978 -0.7596 13 6 0.5643 -6.1986 -1.5371 14 8 1.3191 -7.1141 -1.2829 15 6 -0.3543 -6.2919 -2.7124 16 8 -1.1934 -5.4347 -2.8961 17 7 -0.2507 -7.3280 -3.5681 18 6 -1.1551 -7.4225 -4.7167 19 6 -0.8445 -8.6378 -5.4869 20 6 -0.5969 -9.6071 -6.1013 21 6 -0.2947 -10.7894 -6.8507 22 6 -0.5878 -10.8490 -8.2137 23 6 -0.2901 -11.9895 -8.9309 24 6 0.2890 -13.0758 -8.2997 25 6 0.5773 -13.0250 -6.9476 26 6 0.2890 -11.8887 -6.2199 27 6 -0.3843 -3.9998 -1.0287 28 6 0.3991 -2.6939 -1.1494 29 1 -0.4850 0.8401 -0.0004 30 1 0.6108 -2.4765 0.9836 31 1 2.8765 -3.4980 1.1098 32 1 2.8803 -3.6876 -0.6603 33 1 0.9277 -4.9711 1.3055 34 1 2.1868 -5.8049 0.3608 35 1 0.4202 -8.0129 -3.4213 36 1 -2.1857 -7.4689 -4.3648 37 1 -1.0273 -6.5466 -5.3528 38 1 -1.0432 -10.0030 -8.7068 39 1 -0.5128 -12.0354 -9.9868 40 1 0.5165 -13.9676 -8.8648 41 1 1.0290 -13.8765 -6.4606 42 1 0.5142 -11.8504 -5.1644 43 1 -0.9153 -4.1932 -1.9608 44 1 -1.0981 -3.9201 -0.2088 45 1 -0.2952 -1.8598 -1.2507 46 1 1.0444 -2.7388 -2.0267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325450745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = 19.288067 kcal Electronic energy + Delta-G solvation = -27343.119584 eV Core-core repulsion = 23392.469543 eV Total energy + Delta-G solvation = -3950.650040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74720 -39.57377 -38.60785 -37.05868 -35.89871 -33.94354 -33.36081 -31.42678 -31.22458 -30.99318 -30.09871 -27.85569 -26.38985 -24.29528 -23.22721 -22.97650 -22.42597 -21.98305 -20.47666 -19.20913 -18.54315 -17.48607 -16.91618 -16.54573 -16.34490 -16.03451 -15.71722 -15.43749 -15.29729 -14.74332 -14.52910 -14.49038 -13.94285 -13.91534 -13.74080 -13.62972 -13.31055 -13.08453 -12.90471 -12.71375 -12.31804 -11.91701 -11.82449 -11.71880 -11.44223 -11.34866 -10.94101 -10.86669 -10.74349 -10.58796 -10.35638 -10.09435 -9.72154 -9.54491 -9.44547 -9.21501 -9.13943 -8.86741 -8.58439 -8.31546 -8.08544 -6.00690 -4.05975 0.44918 0.91731 1.54880 1.81796 2.44160 2.75282 3.29780 3.36583 3.37425 3.40824 3.51627 3.53330 3.81190 4.43312 4.47247 4.48643 4.48964 4.62382 4.82981 4.97216 5.07818 5.16499 5.20300 5.30062 5.52525 5.54139 5.62173 5.76346 5.86631 5.92836 6.00304 6.01619 6.02363 6.09251 6.23480 6.45048 6.46146 6.60583 6.70000 6.79522 6.95026 7.03243 7.06814 7.15530 7.29363 7.66838 7.77014 7.84176 7.95582 8.05151 8.21255 8.42779 8.97716 9.58733 11.05840 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.001702 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.611281 B =16449.660793 C =16852.813484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.106 3.894 12 N -0.557 5.557 13 C 0.500 3.500 14 O -0.545 6.545 15 C 0.515 3.485 16 O -0.498 6.498 17 N -0.704 5.704 18 C 0.234 3.766 19 C -0.169 4.169 20 C -0.112 4.112 21 C 0.012 3.988 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.111 4.111 25 C -0.119 4.119 26 C -0.094 4.094 27 C 0.043 3.957 28 C -0.118 4.118 29 H 0.260 0.740 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -23.830 -14.464 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.161 4.161 11 C -0.016 4.016 12 N -0.288 5.288 13 C 0.282 3.718 14 O -0.425 6.425 15 C 0.298 3.702 16 O -0.374 6.374 17 N -0.359 5.359 18 C 0.112 3.888 19 C -0.169 4.169 20 C -0.114 4.114 21 C 0.012 3.988 22 C -0.113 4.113 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.137 4.137 26 C -0.112 4.112 27 C -0.077 4.077 28 C -0.156 4.156 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.158 0.842 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.312 -23.517 -14.426 27.788 hybrid contribution 0.776 0.753 0.102 1.086 sum -2.536 -22.764 -14.325 27.015 Atomic orbital electron populations 1.69885 1.05845 1.26466 1.50580 1.24963 0.94845 0.99029 0.95096 0.86620 0.79986 0.83710 0.77914 1.20855 1.21210 1.19946 1.21180 0.93113 0.90620 1.50300 0.92756 1.18703 0.92754 0.91537 0.94370 1.22019 0.98963 0.93946 1.01131 1.21913 0.92215 0.99980 0.87448 1.48251 1.35653 1.16832 1.28102 1.19717 0.84260 0.83799 0.84004 1.90705 1.41371 1.38109 1.72267 1.20454 0.84654 0.81448 0.83678 1.90397 1.36263 1.37081 1.73680 1.45778 1.37576 1.26612 1.25886 1.18173 0.94514 0.90928 0.85140 1.21941 1.00829 0.95265 0.98869 1.19164 0.99866 0.94380 0.97961 1.15917 1.00937 0.89724 0.92230 1.21254 0.98968 0.98541 0.92560 1.21117 0.99264 0.93199 1.00187 1.21322 0.98098 0.98629 0.94887 1.21128 1.00176 0.97986 0.94388 1.21272 0.97488 0.92145 1.00301 1.23459 0.91783 0.86879 1.05580 1.21886 0.99735 0.94676 0.99335 0.92995 0.95158 0.91782 0.92935 0.91444 0.90102 0.74803 0.88043 0.87971 0.85432 0.85397 0.85645 0.85343 0.85335 0.84167 0.92118 0.88254 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.57 55.43 0.64 -24.26 16 2 C 0.06 1.69 5.36 -17.82 -0.10 1.59 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.86 8.48 -34.44 -0.29 -14.15 16 8 H 0.05 1.46 7.75 -52.48 -0.41 1.05 16 9 C 0.04 1.09 2.00 -91.73 -0.18 0.90 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 1.92 6.43 -3.71 -0.02 1.90 16 12 N -0.56 -10.34 2.98 -173.54 -0.52 -10.85 16 13 C 0.50 8.68 7.76 -11.58 -0.09 8.59 16 14 O -0.54 -9.96 15.91 5.50 0.09 -9.87 16 15 C 0.52 7.76 7.80 -11.58 -0.09 7.67 16 16 O -0.50 -8.26 13.02 5.50 0.07 -8.19 16 17 N -0.70 -8.29 5.53 -63.60 -0.35 -8.65 16 18 C 0.23 2.25 6.15 -6.83 -0.04 2.21 16 19 C -0.17 -1.66 13.46 -37.12 -0.50 -2.16 16 20 C -0.11 -1.13 13.24 -38.83 -0.51 -1.64 16 21 C 0.01 0.11 5.72 -107.00 -0.61 -0.51 16 22 C -0.10 -0.71 9.75 -39.19 -0.38 -1.10 16 23 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 24 C -0.11 -0.63 10.04 -39.50 -0.40 -1.03 16 25 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 26 C -0.09 -0.73 9.75 -39.19 -0.38 -1.12 16 27 C 0.04 0.84 6.21 -3.93 -0.02 0.82 16 28 C -0.12 -2.72 5.19 -26.83 -0.14 -2.85 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.40 7.01 -51.93 -0.36 1.03 16 35 H 0.42 4.62 7.94 -40.82 -0.32 4.29 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.14 2.70 3.77 -57.01 -0.22 2.48 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 2.55 6.34 -51.93 -0.33 2.22 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -30.63 389.14 -10.20 -40.83 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.27 Total: 4.85 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -4.70 Total: -5.79 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.23 Total: -43.76 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.16 Total: -18.06 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.63 -10.20 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325450745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.115 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds