Wall clock time and date at job start Sat Apr 11 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47155 * 274.99676 * 3 2 1 5 5 H 1.48501 * 109.47049 * 34.99438 * 3 2 1 6 6 H 1.48499 * 109.46990 * 154.99804 * 3 2 1 7 7 C 1.37873 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00005 * 175.45969 * 7 2 1 9 9 C 1.50705 * 120.00571 * 355.46632 * 7 2 1 10 10 C 1.53032 * 109.46163 * 185.85252 * 9 7 2 11 11 C 1.53193 * 109.31472 * 178.62654 * 10 9 7 12 12 N 1.46928 * 108.77405 * 54.62929 * 11 10 9 13 13 C 1.34778 * 120.62868 * 126.36862 * 12 11 10 14 14 O 1.21350 * 119.99890 * 2.28512 * 13 12 11 15 15 C 1.49451 * 120.00194 * 182.28208 * 13 12 11 16 16 O 1.21352 * 119.99914 * 353.21393 * 15 13 12 17 17 N 1.34779 * 120.00033 * 173.21889 * 15 13 12 18 18 C 1.46504 * 119.99665 * 179.72509 * 17 15 13 19 19 C 1.47196 * 109.46639 * 180.27411 * 18 17 15 20 20 C 9.61710 * 123.34955 * 233.97063 * 9 1 2 21 21 C 9.44265 * 118.73699 * 247.17673 * 11 1 2 22 22 C 1.39540 * 120.13781 * 75.66508 * 21 20 19 23 23 C 1.37976 * 119.84923 * 179.78605 * 22 21 20 24 24 C 1.38344 * 120.14277 * 0.46257 * 23 22 21 25 25 C 1.38340 * 120.28748 * 359.78984 * 24 23 22 26 26 C 1.37978 * 120.14429 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.74085 * 306.65101 * 12 11 10 28 28 C 1.52757 * 109.01093 * 53.30676 * 27 12 11 29 29 H 0.97002 * 120.00071 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.45366 * 305.82387 * 9 7 2 31 31 H 1.08997 * 109.50211 * 58.67498 * 10 9 7 32 32 H 1.09003 * 109.52539 * 298.59292 * 10 9 7 33 33 H 1.08997 * 109.58560 * 294.84808 * 11 10 9 34 34 H 1.08998 * 109.70795 * 174.48652 * 11 10 9 35 35 H 0.96997 * 119.99843 * 359.97438 * 17 15 13 36 36 H 1.09000 * 109.46877 * 300.26713 * 18 17 15 37 37 H 1.08997 * 109.46985 * 60.27284 * 18 17 15 38 38 H 1.07993 * 120.07272 * 0.02562 * 22 21 20 39 39 H 1.08003 * 119.92371 * 180.25182 * 23 22 21 40 40 H 1.08002 * 119.85235 * 179.76013 * 24 23 22 41 41 H 1.07999 * 119.92606 * 179.97438 * 25 24 23 42 42 H 1.07993 * 120.07190 * 179.97438 * 26 25 24 43 43 H 1.09005 * 109.58210 * 173.14234 * 27 12 11 44 44 H 1.09002 * 109.58503 * 293.56189 * 27 12 11 45 45 H 1.08997 * 109.56809 * 185.55400 * 28 27 12 46 46 H 1.09004 * 109.38824 * 65.51271 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1956 -0.0735 9 6 1.2545 -2.4971 0.1043 10 6 2.2520 -3.6509 0.2296 11 6 1.4859 -4.9701 0.3693 12 7 0.5542 -5.0978 -0.7596 13 6 0.5643 -6.1986 -1.5371 14 8 1.3191 -7.1141 -1.2829 15 6 -0.3543 -6.2919 -2.7124 16 8 -1.1934 -5.4347 -2.8961 17 7 -0.2507 -7.3280 -3.5681 18 6 -1.1551 -7.4225 -4.7167 19 6 -0.8445 -8.6378 -5.4869 20 6 -0.5969 -9.6071 -6.1013 21 6 -0.2947 -10.7894 -6.8507 22 6 -0.5878 -10.8490 -8.2137 23 6 -0.2901 -11.9895 -8.9309 24 6 0.2890 -13.0758 -8.2997 25 6 0.5773 -13.0250 -6.9476 26 6 0.2890 -11.8887 -6.2199 27 6 -0.3843 -3.9998 -1.0287 28 6 0.3991 -2.6939 -1.1494 29 1 -0.4850 0.8401 -0.0004 30 1 0.6108 -2.4765 0.9836 31 1 2.8765 -3.4980 1.1098 32 1 2.8803 -3.6876 -0.6603 33 1 0.9277 -4.9711 1.3055 34 1 2.1868 -5.8049 0.3608 35 1 0.4202 -8.0129 -3.4213 36 1 -2.1857 -7.4689 -4.3648 37 1 -1.0273 -6.5466 -5.3528 38 1 -1.0432 -10.0030 -8.7068 39 1 -0.5128 -12.0354 -9.9868 40 1 0.5165 -13.9676 -8.8648 41 1 1.0290 -13.8765 -6.4606 42 1 0.5142 -11.8504 -5.1644 43 1 -0.9153 -4.1932 -1.9608 44 1 -1.0981 -3.9201 -0.2088 45 1 -0.2952 -1.8598 -1.2507 46 1 1.0444 -2.7388 -2.0267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325450745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:24 Heat of formation + Delta-G solvation = 2.682901 kcal Electronic energy + Delta-G solvation = -27343.839638 eV Core-core repulsion = 23392.469543 eV Total energy + Delta-G solvation = -3951.370094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06710 -40.08454 -39.93782 -38.61711 -36.93126 -35.33331 -34.56796 -33.03438 -31.90856 -31.78546 -31.67368 -28.89795 -28.01901 -25.77597 -24.18619 -23.89882 -23.46717 -23.37351 -21.80155 -20.69978 -19.43089 -18.68330 -18.40193 -18.12393 -17.26788 -17.15766 -16.92609 -16.47536 -16.31107 -16.01320 -15.86650 -15.45916 -15.15985 -14.81379 -14.73639 -14.63849 -14.42872 -14.37945 -14.36086 -14.04835 -13.90422 -13.39357 -13.22385 -12.82037 -12.53162 -12.37147 -12.33877 -12.29280 -12.15316 -12.03216 -11.93482 -11.53575 -11.41069 -11.05712 -10.97686 -10.52681 -10.48145 -9.95929 -9.93852 -9.70659 -9.45834 -8.08026 -6.20480 -0.12088 0.25750 0.42641 0.88751 1.41307 1.43230 1.53057 1.61216 1.84884 2.05742 2.44559 2.53316 2.84948 2.96981 3.19654 3.22337 4.01891 4.03450 4.10859 4.14269 4.26569 4.27632 4.32324 4.40933 4.43593 4.50255 4.51471 4.56630 4.61522 4.71867 4.80510 4.93625 5.00990 5.08481 5.13934 5.20175 5.29533 5.38883 5.44463 5.47762 5.49011 5.54753 5.63239 5.90184 5.97435 5.98815 6.09215 6.26263 6.30513 6.38690 6.62106 6.84774 6.90435 7.47084 8.96896 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.001702 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.611281 B =16449.660793 C =16852.813484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.041 3.959 10 C -0.113 4.113 11 C 0.111 3.889 12 N -0.566 5.566 13 C 0.502 3.498 14 O -0.552 6.552 15 C 0.520 3.480 16 O -0.515 6.515 17 N -0.687 5.687 18 C 0.237 3.763 19 C -0.183 4.183 20 C -0.114 4.114 21 C -0.019 4.019 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.107 4.107 27 C 0.058 3.942 28 C -0.108 4.108 29 H 0.261 0.739 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.152 0.848 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -25.671 -15.711 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.151 4.151 11 C -0.011 4.011 12 N -0.298 5.298 13 C 0.284 3.716 14 O -0.432 6.432 15 C 0.301 3.699 16 O -0.393 6.393 17 N -0.340 5.340 18 C 0.116 3.884 19 C -0.183 4.183 20 C -0.116 4.116 21 C -0.019 4.019 22 C -0.124 4.124 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.062 4.062 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.257 0.743 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.168 0.832 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.843 -25.402 -15.691 29.993 hybrid contribution 0.667 1.185 0.406 1.419 sum -2.175 -24.217 -15.284 28.720 Atomic orbital electron populations 1.70009 1.07002 1.27145 1.51111 1.25691 0.95661 1.02163 0.94875 0.85660 0.78897 0.79866 0.77907 1.20531 1.20836 1.19415 1.21544 0.93183 0.92209 1.50355 0.93187 1.18674 0.93175 0.92192 0.93680 1.21860 0.98229 0.93881 1.01163 1.21859 0.92393 0.98850 0.87968 1.48229 1.35782 1.17046 1.28706 1.20067 0.84230 0.83098 0.84175 1.90698 1.41749 1.38191 1.72517 1.19987 0.84192 0.82126 0.83561 1.90362 1.36934 1.37993 1.74004 1.45723 1.37416 1.25367 1.25500 1.18304 0.94513 0.91238 0.84364 1.21933 1.01677 0.95479 0.99226 1.19621 0.99391 0.94694 0.97863 1.16168 1.02733 0.89929 0.93058 1.21447 0.99185 0.99517 0.92221 1.21449 0.98600 0.92665 1.01325 1.21713 0.96808 0.99372 0.94849 1.21436 0.99805 0.98029 0.94849 1.21432 0.97845 0.92559 1.00698 1.23244 0.91282 0.85529 1.06184 1.21655 0.99009 0.95700 0.98271 0.92999 0.97666 0.90987 0.93622 0.90384 0.88751 0.74259 0.86779 0.87120 0.84884 0.83082 0.82997 0.83277 0.85205 0.83197 0.92297 0.91199 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.17 11.57 21.45 0.25 -51.92 16 2 C 0.02 0.83 5.36 84.65 0.45 1.29 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.53 -29.31 8.48 25.60 0.22 -29.09 16 8 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 9 C 0.04 2.04 2.00 -11.51 -0.02 2.02 16 10 C -0.11 -4.62 5.30 30.67 0.16 -4.45 16 11 C 0.11 3.91 6.43 86.36 0.56 4.47 16 12 N -0.57 -20.60 2.98 -821.30 -2.45 -23.05 16 13 C 0.50 16.80 7.76 87.27 0.68 17.48 16 14 O -0.55 -19.32 15.91 -3.25 -0.05 -19.37 16 15 C 0.52 15.05 7.80 87.27 0.68 15.73 16 16 O -0.52 -16.57 13.02 -3.25 -0.04 -16.61 16 17 N -0.69 -15.28 5.53 -473.48 -2.62 -17.90 16 18 C 0.24 4.26 6.15 84.57 0.52 4.78 16 19 C -0.18 -3.48 13.46 31.12 0.42 -3.06 16 20 C -0.11 -2.26 13.24 30.02 0.40 -1.87 16 21 C -0.02 -0.33 5.72 -21.41 -0.12 -0.45 16 22 C -0.11 -1.49 9.75 22.52 0.22 -1.27 16 23 C -0.12 -1.23 10.03 22.23 0.22 -1.01 16 24 C -0.11 -0.98 10.04 22.32 0.22 -0.75 16 25 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 26 C -0.11 -1.60 9.75 22.52 0.22 -1.38 16 27 C 0.06 2.28 6.21 86.22 0.54 2.82 16 28 C -0.11 -5.08 5.19 30.53 0.16 -4.92 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.09 3.10 7.01 -2.39 -0.02 3.09 16 35 H 0.42 8.78 7.94 -92.71 -0.74 8.04 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 42 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 5.74 3.77 -82.93 -0.31 5.42 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 3.71 6.34 -2.39 -0.02 3.70 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -65.72 389.14 2.83 -62.89 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.03 Total: 21.15 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.74 Total: -0.79 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -4.82 Total: -92.86 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.09 Total: -35.98 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.72 2.83 -62.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325450745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.571 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds