Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47210 * 270.00387 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00225 * 3 2 1 6 6 H 1.48498 * 109.46970 * 150.00284 * 3 2 1 7 7 C 1.37877 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.53034 * 109.46401 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31520 * 178.61539 * 10 9 7 12 12 N 1.46927 * 108.77545 * 54.63633 * 11 10 9 13 13 C 1.34770 * 120.63495 * 126.37028 * 12 11 10 14 14 O 1.21348 * 119.99876 * 1.95325 * 13 12 11 15 15 C 1.49446 * 120.00311 * 181.95247 * 13 12 11 16 16 O 1.21356 * 119.99874 * 353.07273 * 15 13 12 17 17 N 1.34778 * 120.00271 * 173.06573 * 15 13 12 18 18 C 1.46495 * 120.00062 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47144 * 180.02562 * 18 17 15 20 20 H 1.08994 * 109.67968 * 59.67806 * 19 18 17 21 21 C 1.53096 * 109.57850 * 180.02562 * 19 18 17 22 22 C 1.52580 * 109.87705 * 182.78226 * 21 19 18 23 23 C 1.52582 * 110.72412 * 289.36849 * 22 21 19 24 24 C 1.53099 * 109.95592 * 70.67862 * 23 22 21 25 25 S 1.81552 * 109.44697 * 299.40047 * 19 18 17 26 26 C 1.46935 * 118.73536 * 306.64379 * 12 11 10 27 27 C 1.52753 * 109.00773 * 53.30935 * 26 12 11 28 28 H 0.97005 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.45965 * 299.97859 * 9 7 2 30 30 H 1.09000 * 109.50057 * 58.66041 * 10 9 7 31 31 H 1.09002 * 109.49732 * 298.56537 * 10 9 7 32 32 H 1.09001 * 109.58634 * 294.84920 * 11 10 9 33 33 H 1.09001 * 109.58588 * 174.41860 * 11 10 9 34 34 H 0.97000 * 119.99901 * 0.02562 * 17 15 13 35 35 H 1.09001 * 109.47185 * 60.00549 * 18 17 15 36 36 H 1.09003 * 109.47616 * 300.00599 * 18 17 15 37 37 H 1.09007 * 109.39394 * 62.68074 * 21 19 18 38 38 H 1.08999 * 109.38885 * 302.88026 * 21 19 18 39 39 H 1.08995 * 109.22784 * 49.69364 * 22 21 19 40 40 H 1.09005 * 109.22421 * 169.05257 * 22 21 19 41 41 H 1.09006 * 109.39080 * 190.82397 * 23 22 21 42 42 H 1.08994 * 109.39377 * 310.62508 * 23 22 21 43 43 H 1.09001 * 109.57615 * 56.77793 * 24 23 22 44 44 H 1.08999 * 109.57817 * 177.03722 * 24 23 22 45 45 H 1.08999 * 109.58152 * 173.14678 * 26 12 11 46 46 H 1.09000 * 109.58731 * 293.56837 * 26 12 11 47 47 H 1.09002 * 109.56564 * 185.55081 * 27 26 12 48 48 H 1.09002 * 109.36162 * 65.49861 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0344 12 7 0.5224 -5.0089 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 1.2719 -6.9686 -1.8050 15 6 -0.4351 -6.0220 -3.1125 16 8 -1.2792 -5.1540 -3.1957 17 7 -0.3518 -6.9743 -4.0626 18 6 -1.2806 -6.9621 -5.1953 19 6 -0.9734 -8.1421 -6.1195 20 1 -1.0795 -9.0768 -5.5690 21 6 -1.9424 -8.1314 -7.3047 22 6 -1.6872 -9.3443 -8.1945 23 6 -0.3628 -9.1991 -8.9383 24 6 0.8051 -9.3442 -7.9590 25 16 0.7242 -7.9934 -6.7458 26 6 -0.4165 -3.8886 -1.2318 27 6 0.3700 -2.5792 -1.2493 28 1 -0.4850 0.8401 0.0004 29 1 0.6251 -2.5571 0.8900 30 1 2.8884 -3.5913 0.8770 31 1 2.8556 -3.6193 -0.9030 32 1 0.9373 -5.0711 0.9778 33 1 2.1753 -5.8174 -0.0653 34 1 0.3227 -7.6682 -3.9959 35 1 -1.1682 -6.0290 -5.7474 36 1 -2.3034 -7.0457 -4.8276 37 1 -1.7954 -7.2199 -7.8843 38 1 -2.9672 -8.1634 -6.9346 39 1 -1.6557 -10.2420 -7.5773 40 1 -2.4971 -9.4352 -8.9183 41 1 -0.2911 -9.9717 -9.7039 42 1 -0.3181 -8.2174 -9.4096 43 1 0.7333 -10.3024 -7.4444 44 1 1.7475 -9.2920 -8.5041 45 1 -0.9668 -3.9953 -2.1666 46 1 -1.1135 -3.8818 -0.3938 47 1 -0.3225 -1.7376 -1.2606 48 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327217693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -71.806770 kcal Electronic energy + Delta-G solvation = -27658.734604 eV Core-core repulsion = 23839.578347 eV Total energy + Delta-G solvation = -3819.156257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65523 -38.61477 -37.57984 -36.96215 -35.39914 -33.43759 -32.16761 -31.17436 -30.01880 -28.82392 -26.69351 -25.59677 -23.99045 -22.57193 -22.26658 -21.90173 -21.18335 -20.18247 -18.88561 -17.55156 -17.16917 -16.78452 -16.33093 -15.98700 -15.54528 -15.42077 -15.32306 -14.61741 -14.50271 -14.36018 -14.16167 -13.83512 -13.70057 -13.25833 -12.99373 -12.93317 -12.83756 -12.70958 -12.45966 -12.23997 -11.86347 -11.81343 -11.66992 -11.43300 -11.36446 -10.91646 -10.89403 -10.78477 -10.55041 -10.31563 -10.05767 -10.02873 -9.66442 -9.33188 -9.18606 -9.13441 -8.47965 -8.27551 -8.03993 -8.02120 -5.97143 -4.03516 1.29167 1.65817 2.11526 2.51437 3.32014 3.38798 3.41863 3.46745 3.75875 4.08321 4.16882 4.28875 4.42405 4.45256 4.57107 4.62574 4.67167 4.88078 5.08489 5.12091 5.23275 5.32458 5.33697 5.37876 5.48506 5.51209 5.54820 5.68511 5.75465 5.85542 5.92338 6.08646 6.14961 6.29592 6.51277 6.66286 6.77920 6.85513 7.02411 7.14514 7.21416 7.35642 7.70835 7.83919 7.94482 8.00581 8.12345 8.30250 8.46149 8.99680 9.61099 11.08273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.002290 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.467225 B =12225.755540 C =12597.907372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.123 4.123 11 C 0.106 3.894 12 N -0.559 5.559 13 C 0.500 3.500 14 O -0.545 6.545 15 C 0.513 3.487 16 O -0.502 6.502 17 N -0.702 5.702 18 C 0.137 3.863 19 C -0.068 4.068 20 H 0.097 0.903 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.088 4.088 25 S -0.242 6.242 26 C 0.044 3.956 27 C -0.121 4.121 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.142 0.858 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -20.482 -16.282 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.161 4.161 11 C -0.015 4.015 12 N -0.290 5.290 13 C 0.281 3.719 14 O -0.424 6.424 15 C 0.295 3.705 16 O -0.379 6.379 17 N -0.357 5.357 18 C 0.012 3.988 19 C -0.197 4.197 20 H 0.115 0.885 21 C -0.155 4.155 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.237 4.237 25 S -0.016 6.016 26 C -0.076 4.076 27 C -0.159 4.159 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.158 0.842 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.518 -19.468 -15.938 25.562 hybrid contribution -0.046 -0.185 -0.217 0.289 sum -4.564 -19.653 -16.155 25.846 Atomic orbital electron populations 1.69849 1.05829 1.26408 1.50822 1.24965 0.94864 0.99028 0.95153 0.86622 0.79870 0.83600 0.78061 1.20750 1.21275 1.20002 1.21193 0.92880 0.90598 1.50354 0.92751 1.18689 0.92688 0.91602 0.94339 1.22015 0.98932 0.94013 1.01115 1.21891 0.91752 1.00126 0.87760 1.48250 1.34888 1.20098 1.25741 1.19784 0.84468 0.83787 0.83822 1.90698 1.41654 1.34897 1.75173 1.20426 0.84884 0.81569 0.83611 1.90382 1.36733 1.34451 1.76301 1.45799 1.36418 1.30442 1.23025 1.21261 0.93909 0.97723 0.85885 1.23528 0.95144 1.02134 0.98930 0.88505 1.21732 0.98816 0.99936 0.95017 1.21516 0.97829 0.98148 0.99088 1.21737 0.93342 1.03438 0.97668 1.23495 1.02594 0.99219 0.98348 1.87386 1.17337 1.45383 1.51473 1.23439 0.91876 0.86069 1.06177 1.21903 0.99958 0.95104 0.98961 0.92992 0.95477 0.91891 0.92879 0.91539 0.90127 0.74691 0.89728 0.89432 0.89956 0.90220 0.91681 0.90743 0.90810 0.90409 0.89851 0.87672 0.84216 0.92289 0.87700 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 11.31 55.43 0.63 -24.58 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 11 C 0.11 1.99 6.43 -3.71 -0.02 1.97 16 12 N -0.56 -10.78 2.98 -173.54 -0.52 -11.29 16 13 C 0.50 9.09 7.76 -11.59 -0.09 9.00 16 14 O -0.54 -10.38 15.91 5.50 0.09 -10.29 16 15 C 0.51 8.22 7.80 -11.59 -0.09 8.13 16 16 O -0.50 -8.86 13.02 5.49 0.07 -8.79 16 17 N -0.70 -8.72 5.26 -60.73 -0.32 -9.04 16 18 C 0.14 1.31 5.12 -4.04 -0.02 1.29 16 19 C -0.07 -0.50 2.64 -26.68 -0.07 -0.57 16 20 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.12 -0.64 5.05 -26.90 -0.14 -0.78 16 22 C -0.13 -0.59 5.61 -27.16 -0.15 -0.75 16 23 C -0.12 -0.60 5.75 -26.89 -0.15 -0.76 16 24 C -0.09 -0.54 6.45 37.21 0.24 -0.30 16 25 S -0.24 -2.21 20.93 -107.50 -2.25 -4.46 16 26 C 0.04 0.90 6.20 -3.93 -0.02 0.88 16 27 C -0.12 -2.87 5.14 -26.84 -0.14 -3.01 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 34 H 0.42 4.99 7.49 -40.82 -0.31 4.68 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.14 2.82 3.78 -56.98 -0.22 2.61 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.10 2.77 6.03 -51.93 -0.31 2.45 16 48 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -30.48 384.00 -10.83 -41.31 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.92 Total: 4.46 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.38 Total: 0.58 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.21 Total: -44.92 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.25 Total: -4.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.48 -10.83 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327217693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds