Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48501 * 109.47210 * 270.00387 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00225 * 3 2 1 6 6 H 1.48498 * 109.46970 * 150.00284 * 3 2 1 7 7 C 1.37877 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.53034 * 109.46401 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31520 * 178.61539 * 10 9 7 12 12 N 1.46927 * 108.77545 * 54.63633 * 11 10 9 13 13 C 1.34770 * 120.63495 * 126.37028 * 12 11 10 14 14 O 1.21348 * 119.99876 * 1.95325 * 13 12 11 15 15 C 1.49446 * 120.00311 * 181.95247 * 13 12 11 16 16 O 1.21356 * 119.99874 * 353.07273 * 15 13 12 17 17 N 1.34778 * 120.00271 * 173.06573 * 15 13 12 18 18 C 1.46495 * 120.00062 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47144 * 180.02562 * 18 17 15 20 20 H 1.08994 * 109.67968 * 59.67806 * 19 18 17 21 21 C 1.53096 * 109.57850 * 180.02562 * 19 18 17 22 22 C 1.52580 * 109.87705 * 182.78226 * 21 19 18 23 23 C 1.52582 * 110.72412 * 289.36849 * 22 21 19 24 24 C 1.53099 * 109.95592 * 70.67862 * 23 22 21 25 25 S 1.81552 * 109.44697 * 299.40047 * 19 18 17 26 26 C 1.46935 * 118.73536 * 306.64379 * 12 11 10 27 27 C 1.52753 * 109.00773 * 53.30935 * 26 12 11 28 28 H 0.97005 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.45965 * 299.97859 * 9 7 2 30 30 H 1.09000 * 109.50057 * 58.66041 * 10 9 7 31 31 H 1.09002 * 109.49732 * 298.56537 * 10 9 7 32 32 H 1.09001 * 109.58634 * 294.84920 * 11 10 9 33 33 H 1.09001 * 109.58588 * 174.41860 * 11 10 9 34 34 H 0.97000 * 119.99901 * 0.02562 * 17 15 13 35 35 H 1.09001 * 109.47185 * 60.00549 * 18 17 15 36 36 H 1.09003 * 109.47616 * 300.00599 * 18 17 15 37 37 H 1.09007 * 109.39394 * 62.68074 * 21 19 18 38 38 H 1.08999 * 109.38885 * 302.88026 * 21 19 18 39 39 H 1.08995 * 109.22784 * 49.69364 * 22 21 19 40 40 H 1.09005 * 109.22421 * 169.05257 * 22 21 19 41 41 H 1.09006 * 109.39080 * 190.82397 * 23 22 21 42 42 H 1.08994 * 109.39377 * 310.62508 * 23 22 21 43 43 H 1.09001 * 109.57615 * 56.77793 * 24 23 22 44 44 H 1.08999 * 109.57817 * 177.03722 * 24 23 22 45 45 H 1.08999 * 109.58152 * 173.14678 * 26 12 11 46 46 H 1.09000 * 109.58731 * 293.56837 * 26 12 11 47 47 H 1.09002 * 109.56564 * 185.55081 * 27 26 12 48 48 H 1.09002 * 109.36162 * 65.49861 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 0.0344 12 7 0.5224 -5.0089 -1.0825 13 6 0.5121 -6.0347 -1.9566 14 8 1.2719 -6.9686 -1.8050 15 6 -0.4351 -6.0220 -3.1125 16 8 -1.2792 -5.1540 -3.1957 17 7 -0.3518 -6.9743 -4.0626 18 6 -1.2806 -6.9621 -5.1953 19 6 -0.9734 -8.1421 -6.1195 20 1 -1.0795 -9.0768 -5.5690 21 6 -1.9424 -8.1314 -7.3047 22 6 -1.6872 -9.3443 -8.1945 23 6 -0.3628 -9.1991 -8.9383 24 6 0.8051 -9.3442 -7.9590 25 16 0.7242 -7.9934 -6.7458 26 6 -0.4165 -3.8886 -1.2318 27 6 0.3700 -2.5792 -1.2493 28 1 -0.4850 0.8401 0.0004 29 1 0.6251 -2.5571 0.8900 30 1 2.8884 -3.5913 0.8770 31 1 2.8556 -3.6193 -0.9030 32 1 0.9373 -5.0711 0.9778 33 1 2.1753 -5.8174 -0.0653 34 1 0.3227 -7.6682 -3.9959 35 1 -1.1682 -6.0290 -5.7474 36 1 -2.3034 -7.0457 -4.8276 37 1 -1.7954 -7.2199 -7.8843 38 1 -2.9672 -8.1634 -6.9346 39 1 -1.6557 -10.2420 -7.5773 40 1 -2.4971 -9.4352 -8.9183 41 1 -0.2911 -9.9717 -9.7039 42 1 -0.3181 -8.2174 -9.4096 43 1 0.7333 -10.3024 -7.4444 44 1 1.7475 -9.2920 -8.5041 45 1 -0.9668 -3.9953 -2.1666 46 1 -1.1135 -3.8818 -0.3938 47 1 -0.3225 -1.7376 -1.2606 48 1 0.9976 -2.5465 -2.1400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327217693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -89.600481 kcal Electronic energy + Delta-G solvation = -27659.506197 eV Core-core repulsion = 23839.578347 eV Total energy + Delta-G solvation = -3819.927851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03680 -39.96268 -38.61644 -38.16900 -36.38153 -35.26420 -33.07357 -32.85646 -31.76606 -29.49208 -28.34997 -26.70898 -25.27231 -24.14933 -23.53491 -22.94850 -21.86536 -21.41208 -20.50183 -18.79923 -18.38100 -18.12581 -17.96878 -17.20661 -16.85418 -16.48415 -16.32095 -16.02230 -15.71193 -15.31627 -15.20519 -14.77061 -14.71782 -14.66793 -14.58528 -14.42469 -13.95209 -13.75541 -13.56705 -13.36467 -13.20061 -13.15679 -12.81655 -12.52471 -12.34349 -12.31095 -12.27832 -12.14602 -11.92925 -11.81192 -11.50793 -11.33728 -11.06300 -11.01292 -10.67236 -10.46019 -10.34934 -9.95507 -9.70156 -8.72116 -8.07435 -6.21393 0.29116 0.69040 1.26745 1.41200 1.42373 1.51981 1.55429 2.08738 2.43765 2.45592 3.18787 3.22549 3.44394 3.70341 3.87355 3.95471 4.09902 4.11724 4.18822 4.26944 4.32140 4.39719 4.49200 4.50107 4.55885 4.64708 4.67150 4.71660 4.79323 4.82069 4.93989 4.98057 5.04159 5.13376 5.14284 5.16795 5.19194 5.32675 5.37420 5.38763 5.50665 5.62762 5.93917 5.97969 6.10583 6.27477 6.38268 6.66325 6.87826 6.90064 7.46216 8.96290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.002290 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.467225 B =12225.755540 C =12597.907372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.042 3.958 10 C -0.113 4.113 11 C 0.111 3.889 12 N -0.567 5.567 13 C 0.499 3.501 14 O -0.551 6.551 15 C 0.513 3.487 16 O -0.522 6.522 17 N -0.683 5.683 18 C 0.133 3.867 19 C -0.049 4.049 20 H 0.108 0.892 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.073 4.073 25 S -0.312 6.312 26 C 0.060 3.940 27 C -0.111 4.111 28 H 0.261 0.739 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.419 0.581 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.149 0.851 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 -22.222 -17.422 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.152 4.152 11 C -0.011 4.011 12 N -0.299 5.299 13 C 0.282 3.718 14 O -0.431 6.431 15 C 0.295 3.705 16 O -0.400 6.400 17 N -0.337 5.337 18 C 0.010 3.990 19 C -0.178 4.178 20 H 0.126 0.874 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.221 4.221 25 S -0.087 6.087 26 C -0.061 4.061 27 C -0.150 4.150 28 H 0.070 0.930 29 H 0.022 0.978 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.257 0.743 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.165 0.835 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.808 -21.254 -17.103 27.701 hybrid contribution 0.074 0.286 0.079 0.305 sum -4.734 -20.968 -17.024 27.420 Atomic orbital electron populations 1.69977 1.06992 1.27136 1.51216 1.25708 0.95709 1.02221 0.94876 0.85655 0.78801 0.79699 0.78078 1.20437 1.20786 1.19404 1.21551 0.92971 0.92145 1.50555 0.93141 1.18660 0.93127 0.92300 0.93550 1.21863 0.98249 0.93936 1.01113 1.21854 0.91898 0.98951 0.88356 1.48234 1.35008 1.20212 1.26413 1.20154 0.84525 0.83158 0.83948 1.90688 1.42038 1.35008 1.75368 1.20047 0.84421 0.82264 0.83768 1.90346 1.37494 1.35489 1.76707 1.45793 1.36323 1.29028 1.22513 1.21488 0.93884 0.98497 0.85144 1.23474 0.93916 1.01322 0.99086 0.87350 1.21745 0.98935 1.00270 0.94340 1.21513 0.97959 0.97659 0.99171 1.21733 0.93019 1.03556 0.97672 1.23541 1.03417 0.97723 0.97435 1.87608 1.19696 1.47864 1.53488 1.23211 0.91409 0.84760 1.06704 1.21680 0.99250 0.96173 0.97851 0.92959 0.97831 0.90907 0.93778 0.90296 0.88813 0.74257 0.90710 0.87989 0.90712 0.88745 0.91117 0.89464 0.89082 0.91282 0.88914 0.87400 0.83491 0.92312 0.90517 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.78 11.31 21.45 0.24 -52.54 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -29.76 8.56 25.60 0.22 -29.54 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.04 2.13 2.06 -11.52 -0.02 2.11 16 10 C -0.11 -4.77 5.30 30.67 0.16 -4.61 16 11 C 0.11 4.06 6.43 86.36 0.56 4.62 16 12 N -0.57 -21.62 2.98 -821.32 -2.45 -24.07 16 13 C 0.50 17.74 7.76 87.27 0.68 18.41 16 14 O -0.55 -20.29 15.91 -3.24 -0.05 -20.34 16 15 C 0.51 16.05 7.80 87.27 0.68 16.73 16 16 O -0.52 -18.14 13.02 -3.26 -0.04 -18.18 16 17 N -0.68 -16.19 5.26 -464.41 -2.44 -18.64 16 18 C 0.13 2.38 5.12 86.38 0.44 2.82 16 19 C -0.05 -0.64 2.64 30.63 0.08 -0.55 16 20 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 21 C -0.11 -1.01 5.05 30.49 0.15 -0.86 16 22 C -0.13 -0.81 5.61 30.32 0.17 -0.64 16 23 C -0.12 -0.91 5.75 30.49 0.18 -0.74 16 24 C -0.07 -0.77 6.45 72.02 0.46 -0.30 16 25 S -0.31 -5.46 20.93 -56.49 -1.18 -6.64 16 26 C 0.06 2.45 6.20 86.21 0.53 2.99 16 27 C -0.11 -5.42 5.14 30.53 0.16 -5.27 16 28 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 29 H 0.00 0.19 8.14 -2.38 -0.02 0.18 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.09 3.21 7.01 -2.39 -0.02 3.20 16 34 H 0.42 9.55 7.49 -92.71 -0.69 8.86 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 0.80 8.06 -2.38 -0.02 0.79 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 40 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 41 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 42 H 0.07 0.66 8.05 -2.39 -0.02 0.65 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.15 5.98 3.78 -82.33 -0.31 5.66 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.08 4.20 6.03 -2.39 -0.01 4.18 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.84 384.00 0.96 -64.88 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.04 Total: 23.01 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.90 Total: 6.37 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.65 Total: -95.25 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.09 Total: -38.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.18 Total: -6.64 kcal Total: -65.84 0.96 -64.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327217693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.722 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds