Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47192 * 269.99812 * 3 2 1 5 5 H 1.48494 * 109.47618 * 30.00106 * 3 2 1 6 6 H 1.48507 * 109.46885 * 150.00014 * 3 2 1 7 7 C 1.38811 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00275 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.47791 * 134.40106 * 180.02562 * 9 7 2 11 11 C 1.52883 * 85.78531 * 156.12297 * 10 9 7 12 12 C 1.47786 * 134.40240 * 359.97438 * 9 7 2 13 13 C 1.53461 * 115.59264 * 140.24714 * 11 10 9 14 14 C 1.54738 * 103.71994 * 152.75453 * 13 11 10 15 15 H 1.09005 * 110.51531 * 241.98039 * 14 13 11 16 16 N 1.46503 * 110.50811 * 119.41404 * 14 13 11 17 17 C 1.34770 * 120.00458 * 155.00168 * 16 14 13 18 18 O 1.21287 * 119.99843 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00586 * 180.02562 * 17 16 14 20 20 C 1.47199 * 109.47440 * 180.02562 * 19 17 16 21 21 C 9.98990 * 97.09219 * 164.33234 * 9 1 2 22 22 C 9.43672 * 119.41678 * 165.00020 * 11 1 2 23 23 C 1.39537 * 120.13918 * 188.21022 * 22 21 20 24 24 C 1.37973 * 119.85571 * 179.97438 * 23 22 21 25 25 C 1.38345 * 120.14084 * 0.02562 * 24 23 22 26 26 C 1.38339 * 120.28611 * 0.02562 * 25 24 23 27 27 C 1.37969 * 120.14644 * 359.97438 * 26 25 24 28 28 C 1.54548 * 104.07407 * 0.76726 * 14 13 11 29 29 O 1.43243 * 115.85239 * 265.50056 * 11 10 9 30 30 H 0.97004 * 119.99916 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.82313 * 41.90749 * 10 9 7 32 32 H 1.09003 * 113.92875 * 270.34854 * 10 9 7 33 33 H 1.08997 * 113.82359 * 89.66444 * 12 9 7 34 34 H 1.09004 * 113.82411 * 318.08218 * 12 9 7 35 35 H 1.09009 * 110.57449 * 34.20467 * 13 11 10 36 36 H 1.08997 * 110.57803 * 271.31631 * 13 11 10 37 37 H 0.97003 * 119.99514 * 335.00271 * 16 14 13 38 38 H 1.09004 * 109.47145 * 59.99717 * 19 17 16 39 39 H 1.08997 * 109.47061 * 300.00264 * 19 17 16 40 40 H 1.08003 * 120.06823 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.92676 * 180.27193 * 24 23 22 42 42 H 1.08003 * 119.85092 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.92657 * 180.02562 * 26 25 24 44 44 H 1.07996 * 120.07733 * 179.97438 * 27 26 25 45 45 H 1.09008 * 110.32780 * 95.25788 * 28 14 13 46 46 H 1.09001 * 110.33055 * 217.47003 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7230 -3.8115 0.0015 11 6 0.3494 -4.0779 0.6177 12 6 -0.1058 -2.7556 0.0005 13 6 -0.3741 -5.3314 0.1076 14 6 -1.2813 -5.7394 1.2930 15 1 -1.0075 -6.7283 1.6607 16 7 -2.6905 -5.7138 0.8933 17 6 -3.5894 -6.4790 1.5435 18 8 -3.2318 -7.1884 2.4600 19 6 -5.0389 -6.4531 1.1321 20 6 -5.8091 -7.3678 1.9905 21 6 -6.4213 -8.0985 2.6790 22 6 -7.1709 -8.9883 3.5133 23 6 -6.5595 -10.1164 4.0616 24 6 -7.2873 -10.9698 4.8652 25 6 -8.6205 -10.7092 5.1272 26 6 -9.2327 -9.5930 4.5858 27 6 -8.5161 -8.7318 3.7807 28 6 -1.0034 -4.6631 2.3667 29 8 0.3090 -4.1453 2.0480 30 1 -0.4850 0.8401 0.0004 31 1 2.5556 -4.0357 0.6682 32 1 1.8485 -4.2361 -0.9946 33 1 -0.5337 -2.8594 -0.9965 34 1 -0.7168 -2.1464 0.6667 35 1 0.3417 -6.1223 -0.1167 36 1 -0.9746 -5.0962 -0.7711 37 1 -2.9765 -5.1462 0.1606 38 1 -5.1272 -6.7690 0.0926 39 1 -5.4288 -5.4409 1.2385 40 1 -5.5189 -10.3211 3.8573 41 1 -6.8141 -11.8410 5.2937 42 1 -9.1858 -11.3806 5.7566 43 1 -10.2737 -9.3950 4.7946 44 1 -8.9953 -7.8610 3.3582 45 1 -1.7481 -3.8693 2.3088 46 1 -1.0027 -5.1109 3.3605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327425973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = 58.182114 kcal Electronic energy + Delta-G solvation = -27349.994575 eV Core-core repulsion = 23401.031108 eV Total energy + Delta-G solvation = -3948.963468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39928 -39.44910 -39.24606 -36.18589 -34.62017 -34.39869 -32.11022 -32.01991 -31.30210 -30.43715 -28.66570 -27.73814 -25.86774 -24.94456 -23.38733 -22.84299 -22.33247 -21.37814 -20.70358 -19.06029 -18.50627 -17.39058 -16.84753 -16.68988 -16.22574 -15.69676 -15.31663 -15.26801 -15.20651 -15.00314 -14.69698 -14.13025 -13.96542 -13.81766 -13.78682 -13.57721 -13.23334 -13.01388 -12.94132 -12.69141 -12.15534 -11.79131 -11.68727 -11.62026 -11.58254 -11.17825 -11.11341 -11.07586 -10.84085 -10.49750 -10.45370 -10.28656 -9.91833 -9.78217 -9.53451 -9.32531 -9.15869 -8.90551 -8.80997 -8.73472 -6.89007 -5.76382 -3.07721 0.60620 1.03773 2.23932 2.43057 2.66391 3.14319 3.40053 3.45039 3.47150 3.68634 3.78395 4.28717 4.46235 4.54314 4.60107 4.61064 4.70608 4.76560 4.94333 4.97551 5.03824 5.07075 5.13639 5.17314 5.22731 5.23108 5.38778 5.42398 5.59527 5.66433 5.68663 5.82858 5.98764 5.99302 6.06272 6.06878 6.12869 6.17125 6.33581 6.35799 6.50327 6.56743 6.58294 6.92776 7.16792 7.26534 7.39778 7.47248 7.64318 7.98011 8.05773 9.04731 9.71199 10.57602 11.41225 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.001667 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.000495 B =16792.340811 C =17279.719927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.055 3.945 12 C 0.153 3.847 13 C -0.146 4.146 14 C 0.114 3.886 15 H 0.101 0.899 16 N -0.716 5.716 17 C 0.516 3.484 18 O -0.532 6.532 19 C -0.026 4.026 20 C -0.136 4.136 21 C -0.133 4.133 22 C 0.021 3.979 23 C -0.094 4.094 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.099 4.099 28 C 0.037 3.963 29 O -0.335 6.335 30 H 0.253 0.747 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.405 0.595 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 -20.296 3.444 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.003 3.997 11 C 0.013 3.987 12 C 0.028 3.972 13 C -0.186 4.186 14 C 0.009 3.991 15 H 0.119 0.881 16 N -0.370 5.370 17 C 0.301 3.699 18 O -0.408 6.408 19 C -0.065 4.065 20 C -0.136 4.136 21 C -0.133 4.133 22 C 0.021 3.979 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.041 4.041 29 O -0.252 6.252 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.241 0.759 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.081 0.919 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.147 -20.377 4.277 26.973 hybrid contribution 0.120 1.253 -0.622 1.404 sum -17.027 -19.123 3.655 25.865 Atomic orbital electron populations 1.69803 1.05035 1.25258 1.56990 1.24757 0.95696 0.97496 1.02519 0.86104 0.78692 0.83391 0.77497 1.21660 1.21648 1.20587 1.19012 0.90296 0.81847 1.43480 0.90164 1.45827 1.01991 0.99179 1.86086 1.22521 0.93960 0.86604 0.96653 1.23770 0.98778 0.94243 0.81872 1.22584 0.88819 0.88990 0.96853 1.23036 0.98762 0.99218 0.97540 1.22452 0.79853 1.01089 0.95709 0.88114 1.46037 1.08066 1.45638 1.37211 1.20335 0.87290 0.79711 0.82516 1.90744 1.80523 1.40540 1.28980 1.18636 0.90258 0.98898 0.98666 1.21198 0.97497 0.97187 0.97739 1.19049 0.98997 0.97588 0.97632 1.15887 0.92232 0.93190 0.96548 1.21310 1.00266 0.93244 0.96369 1.21119 0.94458 0.99646 0.98516 1.21283 0.95077 0.97425 0.99510 1.21084 1.00098 0.94910 0.97778 1.21242 0.92815 0.99578 0.98073 1.23790 0.86850 0.94950 0.98504 1.89042 1.30903 1.85096 1.20174 0.93728 0.92873 0.93434 0.94837 0.90470 0.89760 0.89690 0.75909 0.86141 0.85996 0.85360 0.85484 0.85782 0.85547 0.85589 0.91858 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 11.40 55.49 0.63 -26.70 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.65 3.71 -183.58 -0.68 -16.33 16 10 C 0.13 2.64 8.47 -3.40 -0.03 2.61 16 11 C 0.05 1.02 1.28 -90.67 -0.12 0.90 16 12 C 0.15 3.49 6.99 -3.41 -0.02 3.47 16 13 C -0.15 -1.98 6.25 -25.58 -0.16 -2.13 16 14 C 0.11 1.50 3.49 -66.20 -0.23 1.27 16 15 H 0.10 1.39 7.55 -51.93 -0.39 1.00 16 16 N -0.72 -7.60 5.08 -52.13 -0.27 -7.87 16 17 C 0.52 6.04 7.81 -10.99 -0.09 5.96 16 18 O -0.53 -8.58 15.68 5.55 0.09 -8.49 16 19 C -0.03 -0.21 6.19 -30.67 -0.19 -0.40 16 20 C -0.14 -1.57 12.59 -37.10 -0.47 -2.04 16 21 C -0.13 -1.62 13.25 -38.83 -0.51 -2.14 16 22 C 0.02 0.23 5.72 -107.02 -0.61 -0.38 16 23 C -0.09 -0.92 9.75 -39.19 -0.38 -1.30 16 24 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 25 C -0.11 -0.79 10.04 -39.50 -0.40 -1.19 16 26 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 27 C -0.10 -0.87 9.75 -39.20 -0.38 -1.25 16 28 C 0.04 0.60 7.37 37.97 0.28 0.88 16 29 O -0.33 -6.72 11.44 -35.23 -0.40 -7.12 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.08 2.00 7.20 -51.93 -0.37 1.62 16 35 H 0.08 1.03 8.12 -51.92 -0.42 0.61 16 36 H 0.08 1.01 7.39 -51.93 -0.38 0.62 16 37 H 0.41 3.27 8.38 -40.82 -0.34 2.92 16 38 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 43 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.06 1.03 8.06 -51.92 -0.42 0.61 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -36.50 395.19 -10.58 -47.08 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.52 Total: 1.21 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -4.36 Total: -5.05 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.31 Total: -50.89 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.32 Total: -15.61 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.50 -10.58 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.261 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds