Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99727 * 2 1 4 4 H 1.48501 * 109.47192 * 269.99812 * 3 2 1 5 5 H 1.48494 * 109.47618 * 30.00106 * 3 2 1 6 6 H 1.48507 * 109.46885 * 150.00014 * 3 2 1 7 7 C 1.38811 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00275 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.47791 * 134.40106 * 180.02562 * 9 7 2 11 11 C 1.52883 * 85.78531 * 156.12297 * 10 9 7 12 12 C 1.47786 * 134.40240 * 359.97438 * 9 7 2 13 13 C 1.53461 * 115.59264 * 140.24714 * 11 10 9 14 14 C 1.54738 * 103.71994 * 152.75453 * 13 11 10 15 15 H 1.09005 * 110.51531 * 241.98039 * 14 13 11 16 16 N 1.46503 * 110.50811 * 119.41404 * 14 13 11 17 17 C 1.34770 * 120.00458 * 155.00168 * 16 14 13 18 18 O 1.21287 * 119.99843 * 0.02562 * 17 16 14 19 19 C 1.50698 * 120.00586 * 180.02562 * 17 16 14 20 20 C 1.47199 * 109.47440 * 180.02562 * 19 17 16 21 21 C 9.98990 * 97.09219 * 164.33234 * 9 1 2 22 22 C 9.43672 * 119.41678 * 165.00020 * 11 1 2 23 23 C 1.39537 * 120.13918 * 188.21022 * 22 21 20 24 24 C 1.37973 * 119.85571 * 179.97438 * 23 22 21 25 25 C 1.38345 * 120.14084 * 0.02562 * 24 23 22 26 26 C 1.38339 * 120.28611 * 0.02562 * 25 24 23 27 27 C 1.37969 * 120.14644 * 359.97438 * 26 25 24 28 28 C 1.54548 * 104.07407 * 0.76726 * 14 13 11 29 29 O 1.43243 * 115.85239 * 265.50056 * 11 10 9 30 30 H 0.97004 * 119.99916 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.82313 * 41.90749 * 10 9 7 32 32 H 1.09003 * 113.92875 * 270.34854 * 10 9 7 33 33 H 1.08997 * 113.82359 * 89.66444 * 12 9 7 34 34 H 1.09004 * 113.82411 * 318.08218 * 12 9 7 35 35 H 1.09009 * 110.57449 * 34.20467 * 13 11 10 36 36 H 1.08997 * 110.57803 * 271.31631 * 13 11 10 37 37 H 0.97003 * 119.99514 * 335.00271 * 16 14 13 38 38 H 1.09004 * 109.47145 * 59.99717 * 19 17 16 39 39 H 1.08997 * 109.47061 * 300.00264 * 19 17 16 40 40 H 1.08003 * 120.06823 * 359.97438 * 23 22 21 41 41 H 1.08003 * 119.92676 * 180.27193 * 24 23 22 42 42 H 1.08003 * 119.85092 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.92657 * 180.02562 * 26 25 24 44 44 H 1.07996 * 120.07733 * 179.97438 * 27 26 25 45 45 H 1.09008 * 110.32780 * 95.25788 * 28 14 13 46 46 H 1.09001 * 110.33055 * 217.47003 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7230 -3.8115 0.0015 11 6 0.3494 -4.0779 0.6177 12 6 -0.1058 -2.7556 0.0005 13 6 -0.3741 -5.3314 0.1076 14 6 -1.2813 -5.7394 1.2930 15 1 -1.0075 -6.7283 1.6607 16 7 -2.6905 -5.7138 0.8933 17 6 -3.5894 -6.4790 1.5435 18 8 -3.2318 -7.1884 2.4600 19 6 -5.0389 -6.4531 1.1321 20 6 -5.8091 -7.3678 1.9905 21 6 -6.4213 -8.0985 2.6790 22 6 -7.1709 -8.9883 3.5133 23 6 -6.5595 -10.1164 4.0616 24 6 -7.2873 -10.9698 4.8652 25 6 -8.6205 -10.7092 5.1272 26 6 -9.2327 -9.5930 4.5858 27 6 -8.5161 -8.7318 3.7807 28 6 -1.0034 -4.6631 2.3667 29 8 0.3090 -4.1453 2.0480 30 1 -0.4850 0.8401 0.0004 31 1 2.5556 -4.0357 0.6682 32 1 1.8485 -4.2361 -0.9946 33 1 -0.5337 -2.8594 -0.9965 34 1 -0.7168 -2.1464 0.6667 35 1 0.3417 -6.1223 -0.1167 36 1 -0.9746 -5.0962 -0.7711 37 1 -2.9765 -5.1462 0.1606 38 1 -5.1272 -6.7690 0.0926 39 1 -5.4288 -5.4409 1.2385 40 1 -5.5189 -10.3211 3.8573 41 1 -6.8141 -11.8410 5.2937 42 1 -9.1858 -11.3806 5.7566 43 1 -10.2737 -9.3950 4.7946 44 1 -8.9953 -7.8610 3.3582 45 1 -1.7481 -3.8693 2.3088 46 1 -1.0027 -5.1109 3.3605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327425973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = 34.371176 kcal Electronic energy + Delta-G solvation = -27351.027095 eV Core-core repulsion = 23401.031108 eV Total energy + Delta-G solvation = -3949.995987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66914 -40.47844 -40.03143 -37.75604 -35.69237 -35.29606 -34.13216 -32.79782 -31.90218 -31.55149 -29.99964 -28.89089 -27.52199 -26.65156 -24.21550 -23.84123 -23.44491 -22.60402 -21.72884 -20.62420 -19.20706 -18.73934 -18.31070 -17.66980 -17.06752 -16.92421 -16.62865 -16.51554 -16.47625 -15.94802 -15.87331 -15.54948 -15.00651 -14.86524 -14.61963 -14.49036 -14.37569 -14.34375 -14.21191 -13.70497 -13.58110 -13.19176 -13.01662 -12.93151 -12.71824 -12.62736 -12.34871 -12.26926 -12.24832 -11.82038 -11.76685 -11.64228 -11.31973 -11.31519 -10.91718 -10.82835 -10.53560 -10.12535 -9.93811 -9.41457 -8.91208 -7.90336 -5.22020 -0.06247 0.42621 1.38319 1.44482 1.46729 1.53992 1.55037 1.89642 2.26901 2.47244 2.89980 3.00481 3.07348 3.28437 3.41699 3.53716 3.69895 3.76898 3.86819 4.02672 4.04707 4.12709 4.20783 4.23361 4.34610 4.49168 4.51362 4.56540 4.61819 4.63879 4.69499 4.74635 4.84924 4.91336 4.92687 4.97625 5.07000 5.08668 5.17056 5.25215 5.46395 5.46589 5.51543 5.52659 5.54231 5.93731 6.00272 6.12575 6.43279 6.56667 6.93049 7.18459 7.60822 8.55193 9.26665 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.001667 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.000495 B =16792.340811 C =17279.719927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.641 5.641 10 C 0.126 3.874 11 C 0.070 3.930 12 C 0.153 3.847 13 C -0.130 4.130 14 C 0.127 3.873 15 H 0.100 0.900 16 N -0.703 5.703 17 C 0.517 3.483 18 O -0.581 6.581 19 C -0.019 4.019 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.010 4.010 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.109 4.109 28 C 0.034 3.966 29 O -0.369 6.369 30 H 0.248 0.752 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.421 0.579 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.134 0.866 45 H 0.056 0.944 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.808 -21.699 2.680 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.001 3.999 11 C 0.030 3.970 12 C 0.028 3.972 13 C -0.169 4.169 14 C 0.021 3.979 15 H 0.118 0.882 16 N -0.357 5.357 17 C 0.304 3.696 18 O -0.460 6.460 19 C -0.057 4.057 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.010 4.010 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.126 4.126 28 C -0.044 4.044 29 O -0.287 6.287 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.260 0.740 38 H 0.176 0.824 39 H 0.169 0.831 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.172 0.828 44 H 0.152 0.848 45 H 0.074 0.926 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.302 -21.798 3.481 28.675 hybrid contribution 0.463 1.631 -0.306 1.723 sum -17.838 -20.167 3.175 27.111 Atomic orbital electron populations 1.69981 1.06283 1.25490 1.58382 1.25580 0.96647 1.00698 1.03089 0.85092 0.77585 0.79163 0.77582 1.20921 1.22112 1.19713 1.19388 0.90777 0.83504 1.42542 0.90189 1.46243 1.03678 1.00475 1.86422 1.22776 0.94928 0.83881 0.98277 1.23442 0.97589 0.94596 0.81418 1.22549 0.87164 0.90758 0.96774 1.22960 0.99006 0.96902 0.97990 1.22167 0.81304 0.99768 0.94626 0.88190 1.45893 1.06938 1.45537 1.37358 1.20903 0.88563 0.78586 0.81506 1.90734 1.81482 1.42634 1.31192 1.18841 0.87150 0.99901 0.99840 1.21984 0.97547 0.97481 0.98157 1.19744 0.99730 0.98441 0.98312 1.16181 0.93352 0.93831 0.97679 1.21392 1.00229 0.93980 0.97690 1.21411 0.95027 0.99789 0.97792 1.21692 0.94786 0.97535 0.98993 1.21462 1.01295 0.94371 0.96658 1.21447 0.92233 1.00395 0.98573 1.23923 0.85136 0.95546 0.99834 1.89004 1.32938 1.85613 1.21141 0.94314 0.93238 0.90187 0.93910 0.94450 0.87295 0.87215 0.74046 0.82370 0.83135 0.86419 0.83415 0.82765 0.82785 0.84772 0.92616 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 11.40 21.65 0.25 -57.39 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.23 -13.46 10.70 84.03 0.90 -12.56 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.64 -33.37 3.71 -740.96 -2.75 -36.12 16 10 C 0.13 5.02 8.47 86.09 0.73 5.75 16 11 C 0.07 2.56 1.28 -10.67 -0.01 2.55 16 12 C 0.15 7.00 6.99 86.08 0.60 7.60 16 13 C -0.13 -3.12 6.25 31.34 0.20 -2.92 16 14 C 0.13 3.13 3.49 46.11 0.16 3.29 16 15 H 0.10 2.58 7.55 -2.38 -0.02 2.56 16 16 N -0.70 -13.37 5.08 -437.23 -2.22 -15.59 16 17 C 0.52 11.36 7.81 87.66 0.68 12.05 16 18 O -0.58 -18.71 15.68 -3.05 -0.05 -18.76 16 19 C -0.02 -0.28 6.19 28.04 0.17 -0.10 16 20 C -0.15 -3.47 12.59 31.10 0.39 -3.08 16 21 C -0.16 -4.11 13.25 29.99 0.40 -3.72 16 22 C -0.01 -0.23 5.72 -21.42 -0.12 -0.36 16 23 C -0.11 -2.35 9.75 22.52 0.22 -2.13 16 24 C -0.12 -1.78 10.03 22.23 0.22 -1.56 16 25 C -0.11 -1.31 10.04 22.32 0.22 -1.08 16 26 C -0.12 -1.51 10.03 22.23 0.22 -1.28 16 27 C -0.11 -1.88 9.75 22.52 0.22 -1.66 16 28 C 0.03 1.07 7.37 72.51 0.53 1.60 16 29 O -0.37 -14.86 11.44 -148.98 -1.70 -16.56 16 30 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.04 1.86 7.96 -2.39 -0.02 1.84 16 34 H 0.04 1.99 7.20 -2.38 -0.02 1.97 16 35 H 0.11 2.19 8.12 -2.38 -0.02 2.17 16 36 H 0.11 2.14 7.39 -2.39 -0.02 2.12 16 37 H 0.42 5.48 8.38 -92.71 -0.78 4.70 16 38 H 0.16 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 43 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.06 1.83 8.06 -2.38 -0.02 1.81 16 46 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -83.47 395.19 1.99 -81.48 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.23 Total: 15.43 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.21 Total: -1.05 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.72 Total: -109.10 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.75 Total: -35.32 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -83.47 1.99 -81.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.851 kcal (2) G-P(sol) polarization free energy of solvation -83.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds