Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08994 * 111.10791 * 151.42831 * 14 13 11 16 16 N 1.46496 * 111.14268 * 275.53297 * 14 13 11 17 17 C 1.34775 * 119.99973 * 198.13018 * 16 14 13 18 18 O 1.21283 * 119.99992 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00085 * 179.97438 * 17 16 14 20 20 C 1.47194 * 109.47462 * 180.02562 * 19 17 16 21 21 C 9.41898 * 85.27300 * 204.76210 * 9 1 2 22 22 C 9.52518 * 114.33204 * 213.85096 * 10 1 2 23 23 C 1.39535 * 120.13948 * 120.97707 * 22 21 20 24 24 C 1.37980 * 119.85430 * 179.74181 * 23 22 21 25 25 C 1.38346 * 120.13924 * 0.55562 * 24 23 22 26 26 C 1.38341 * 120.28966 * 359.69060 * 25 24 23 27 27 C 1.37977 * 120.14045 * 0.02818 * 26 25 24 28 28 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 29 29 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 32 32 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 33 33 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 34 34 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 35 35 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 36 36 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 37 37 H 0.97000 * 120.00140 * 18.12732 * 16 14 13 38 38 H 1.09003 * 109.47320 * 300.00856 * 19 17 16 39 39 H 1.09002 * 109.46768 * 60.00357 * 19 17 16 40 40 H 1.07998 * 120.07503 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.92821 * 180.29239 * 24 23 22 42 42 H 1.08003 * 119.85186 * 179.72155 * 25 24 23 43 43 H 1.07992 * 119.93007 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.06997 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.29717 * 205.04797 * 28 14 13 46 46 H 1.08995 * 110.38551 * 82.94422 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -1.4102 -6.7976 -1.5275 16 7 -2.4950 -4.9811 -1.5010 17 6 -3.5122 -5.4064 -2.2761 18 8 -3.3820 -6.4036 -2.9541 19 6 -4.8113 -4.6431 -2.3004 20 6 -5.7532 -5.3064 -3.2166 21 6 -6.5040 -5.8349 -3.9483 22 6 -7.4202 -6.4800 -4.8399 23 6 -6.9841 -6.9325 -6.0857 24 6 -7.8706 -7.5581 -6.9381 25 6 -9.1919 -7.7268 -6.5645 26 6 -9.6318 -7.2758 -5.3329 27 6 -8.7540 -6.6538 -4.4690 28 6 -0.2902 -5.2595 -2.6173 29 8 0.3472 -4.0694 -2.1188 30 1 -0.4850 0.8401 0.0004 31 1 -0.4939 -2.9498 0.9979 32 1 -0.7253 -2.1588 -0.6202 33 1 2.5430 -4.0459 -0.6424 34 1 1.7598 -4.2501 0.9826 35 1 0.3211 -6.1464 0.0146 36 1 -1.0313 -5.1386 0.6288 37 1 -2.5990 -4.1834 -0.9590 38 1 -5.2370 -4.6183 -1.2973 39 1 -4.6278 -3.6245 -2.6424 40 1 -5.9538 -6.7976 -6.3803 41 1 -7.5332 -7.9131 -7.9007 42 1 -9.8829 -8.2131 -7.2372 43 1 -10.6644 -7.4109 -5.0470 44 1 -9.0986 -6.3026 -3.5076 45 1 -0.8659 -5.0327 -3.5146 46 1 0.4545 -6.0264 -2.8302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327425979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = 61.154679 kcal Electronic energy + Delta-G solvation = -27627.384182 eV Core-core repulsion = 23678.549615 eV Total energy + Delta-G solvation = -3948.834568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42958 -39.40062 -39.15536 -36.34284 -34.53051 -34.23483 -32.14671 -31.96189 -31.25871 -30.53442 -28.63638 -27.88259 -25.71711 -24.79251 -23.35673 -22.79968 -22.30929 -21.50694 -20.57245 -19.05909 -18.45398 -17.27287 -16.97156 -16.63347 -16.29459 -15.65799 -15.41261 -15.22945 -15.21905 -14.71475 -14.42827 -14.28002 -13.79718 -13.75249 -13.68629 -13.48343 -13.35423 -13.23439 -12.98274 -12.70825 -12.08974 -11.74959 -11.59726 -11.56896 -11.44283 -11.40257 -11.10979 -11.06447 -10.82583 -10.52486 -10.37529 -10.27293 -9.84312 -9.83833 -9.51359 -9.28209 -9.16821 -8.83838 -8.68995 -8.58102 -6.88808 -5.76588 -3.07435 0.65896 1.08000 2.34259 2.53379 2.69853 3.21583 3.40813 3.44647 3.45674 3.75746 3.87046 4.14616 4.44385 4.51832 4.63917 4.64148 4.74213 4.80436 5.00836 5.03523 5.05146 5.11867 5.17658 5.22498 5.26701 5.27937 5.35328 5.45697 5.57116 5.70701 5.73433 5.82927 5.87093 5.91097 6.02019 6.10747 6.16839 6.22050 6.35830 6.44575 6.52749 6.59792 6.62737 6.88014 7.15430 7.34989 7.47624 7.51102 7.77811 7.98587 8.13656 9.04066 9.70922 10.62990 11.41511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.001882 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.243055 B =14874.317626 C =15713.855383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.153 3.847 11 C 0.053 3.947 12 C 0.110 3.890 13 C -0.144 4.144 14 C 0.113 3.887 15 H 0.103 0.897 16 N -0.711 5.711 17 C 0.519 3.481 18 O -0.537 6.537 19 C -0.028 4.028 20 C -0.130 4.130 21 C -0.137 4.137 22 C 0.024 3.976 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.099 4.099 28 C 0.039 3.961 29 O -0.334 6.334 30 H 0.253 0.747 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.409 0.591 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.082 0.918 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 -15.839 -6.734 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.012 3.988 12 C -0.017 4.017 13 C -0.183 4.183 14 C 0.008 3.992 15 H 0.121 0.879 16 N -0.363 5.363 17 C 0.305 3.695 18 O -0.413 6.413 19 C -0.067 4.067 20 C -0.131 4.131 21 C -0.137 4.137 22 C 0.024 3.976 23 C -0.113 4.113 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.039 4.039 29 O -0.252 6.252 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.245 0.755 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.101 0.899 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.558 -15.998 -7.345 24.167 hybrid contribution 0.418 1.186 0.511 1.357 sum -16.140 -14.812 -6.834 22.947 Atomic orbital electron populations 1.69792 1.05003 1.25369 1.56734 1.24759 0.95725 0.97455 1.02505 0.86173 0.78469 0.83038 0.77928 1.21069 1.21556 1.21208 1.18864 0.90091 0.81358 1.43788 0.90177 1.45368 1.02330 0.99114 1.85842 1.22426 0.89720 0.89364 0.95831 1.23495 0.98334 0.95185 0.81818 1.22711 0.95272 0.87184 0.96520 1.23227 0.98856 0.98818 0.97363 1.22562 0.83537 0.97176 0.95972 0.87921 1.45859 1.12989 1.30820 1.46672 1.20290 0.84795 0.85015 0.79411 1.90727 1.82725 1.26055 1.41809 1.18654 0.89769 0.99468 0.98810 1.21163 0.96266 0.98489 0.97145 1.18974 0.97812 0.99269 0.97649 1.15894 0.91070 0.98512 0.92159 1.21306 1.00230 0.97088 0.92635 1.21113 0.93524 0.99293 0.99794 1.21272 0.95965 0.99545 0.96610 1.21079 0.99703 0.98834 0.94254 1.21242 0.92009 0.98613 0.99879 1.23840 0.94341 0.88682 0.97048 1.88463 1.78874 1.39580 1.18331 0.93681 0.94779 0.90457 0.93590 0.93939 0.89084 0.89190 0.75506 0.86080 0.85758 0.85405 0.85512 0.85818 0.85583 0.85607 0.89938 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 11.51 55.49 0.64 -26.40 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -6.08 10.74 -15.06 -0.16 -6.24 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.51 3.78 -184.57 -0.70 -16.21 16 10 C 0.15 3.41 6.89 -7.92 -0.05 3.36 16 11 C 0.05 0.96 1.75 -90.45 -0.16 0.80 16 12 C 0.11 2.25 8.20 -8.06 -0.07 2.18 16 13 C -0.14 -1.87 5.97 -25.07 -0.15 -2.02 16 14 C 0.11 1.46 3.37 -65.54 -0.22 1.23 16 15 H 0.10 1.26 7.74 -51.93 -0.40 0.86 16 16 N -0.71 -8.66 5.24 -51.50 -0.27 -8.93 16 17 C 0.52 6.70 7.81 -10.99 -0.09 6.62 16 18 O -0.54 -8.92 15.78 5.55 0.09 -8.83 16 19 C -0.03 -0.28 6.19 -30.67 -0.19 -0.47 16 20 C -0.13 -1.65 12.58 -37.13 -0.47 -2.12 16 21 C -0.14 -1.79 13.24 -38.84 -0.51 -2.30 16 22 C 0.02 0.27 5.72 -107.00 -0.61 -0.34 16 23 C -0.09 -0.98 9.75 -39.19 -0.38 -1.36 16 24 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 25 C -0.12 -0.85 10.04 -39.50 -0.40 -1.24 16 26 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 27 C -0.10 -0.93 9.75 -39.19 -0.38 -1.31 16 28 C 0.04 0.59 7.49 38.23 0.29 0.87 16 29 O -0.33 -6.57 11.18 -35.23 -0.39 -6.97 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 32 H 0.08 1.95 7.13 -51.93 -0.37 1.58 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 36 H 0.09 1.06 7.81 -51.93 -0.41 0.66 16 37 H 0.41 4.58 8.62 -40.82 -0.35 4.22 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -36.04 396.07 -10.70 -46.74 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.56 Total: 2.74 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -4.45 Total: -5.35 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.33 Total: -51.55 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.31 Total: -15.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.04 -10.70 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.898 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds