Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47216 * 135.97666 * 359.35780 * 9 7 2 11 11 C 1.52975 * 87.69390 * 153.61143 * 10 9 7 12 12 C 1.47219 * 135.97128 * 179.72306 * 9 7 2 13 13 C 1.53659 * 115.11420 * 140.89583 * 11 10 9 14 14 C 1.55486 * 101.96938 * 111.47751 * 13 11 10 15 15 H 1.08994 * 111.10791 * 151.42831 * 14 13 11 16 16 N 1.46496 * 111.14268 * 275.53297 * 14 13 11 17 17 C 1.34775 * 119.99973 * 198.13018 * 16 14 13 18 18 O 1.21283 * 119.99992 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00085 * 179.97438 * 17 16 14 20 20 C 1.47194 * 109.47462 * 180.02562 * 19 17 16 21 21 C 9.41898 * 85.27300 * 204.76210 * 9 1 2 22 22 C 9.52518 * 114.33204 * 213.85096 * 10 1 2 23 23 C 1.39535 * 120.13948 * 120.97707 * 22 21 20 24 24 C 1.37980 * 119.85430 * 179.74181 * 23 22 21 25 25 C 1.38346 * 120.13924 * 0.55562 * 24 23 22 26 26 C 1.38341 * 120.28966 * 359.69060 * 25 24 23 27 27 C 1.37977 * 120.14045 * 0.02818 * 26 25 24 28 28 C 1.55021 * 101.04062 * 33.48918 * 14 13 11 29 29 O 1.42391 * 116.32340 * 269.47484 * 11 10 9 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 1.09003 * 113.49350 * 268.29470 * 10 9 7 32 32 H 1.08998 * 113.49476 * 38.83045 * 10 9 7 33 33 H 1.08999 * 113.49850 * 321.16223 * 12 9 7 34 34 H 1.08994 * 113.49651 * 91.64129 * 12 9 7 35 35 H 1.09006 * 110.93065 * 229.64766 * 13 11 10 36 36 H 1.08997 * 110.93072 * 353.30649 * 13 11 10 37 37 H 0.97000 * 120.00140 * 18.12732 * 16 14 13 38 38 H 1.09003 * 109.47320 * 300.00856 * 19 17 16 39 39 H 1.09002 * 109.46768 * 60.00357 * 19 17 16 40 40 H 1.07998 * 120.07503 * 0.02562 * 23 22 21 41 41 H 1.08002 * 119.92821 * 180.29239 * 24 23 22 42 42 H 1.08003 * 119.85186 * 179.72155 * 25 24 23 43 43 H 1.07992 * 119.93007 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.06997 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.29717 * 205.04797 * 28 14 13 46 46 H 1.08995 * 110.38551 * 82.94422 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0898 -2.7932 -0.0023 11 6 0.3423 -4.0868 -0.6950 12 6 1.6822 -3.8163 -0.0143 13 6 -0.3882 -5.3540 -0.2245 14 6 -1.2323 -5.7235 -1.4770 15 1 -1.4102 -6.7976 -1.5275 16 7 -2.4950 -4.9811 -1.5010 17 6 -3.5122 -5.4064 -2.2761 18 8 -3.3820 -6.4036 -2.9541 19 6 -4.8113 -4.6431 -2.3004 20 6 -5.7532 -5.3064 -3.2166 21 6 -6.5040 -5.8349 -3.9483 22 6 -7.4202 -6.4800 -4.8399 23 6 -6.9841 -6.9325 -6.0857 24 6 -7.8706 -7.5581 -6.9381 25 6 -9.1919 -7.7268 -6.5645 26 6 -9.6318 -7.2758 -5.3329 27 6 -8.7540 -6.6538 -4.4690 28 6 -0.2902 -5.2595 -2.6173 29 8 0.3472 -4.0694 -2.1188 30 1 -0.4850 0.8401 0.0004 31 1 -0.4939 -2.9498 0.9979 32 1 -0.7253 -2.1588 -0.6202 33 1 2.5430 -4.0459 -0.6424 34 1 1.7598 -4.2501 0.9826 35 1 0.3211 -6.1464 0.0146 36 1 -1.0313 -5.1386 0.6288 37 1 -2.5990 -4.1834 -0.9590 38 1 -5.2370 -4.6183 -1.2973 39 1 -4.6278 -3.6245 -2.6424 40 1 -5.9538 -6.7976 -6.3803 41 1 -7.5332 -7.9131 -7.9007 42 1 -9.8829 -8.2131 -7.2372 43 1 -10.6644 -7.4109 -5.0470 44 1 -9.0986 -6.3026 -3.5076 45 1 -0.8659 -5.0327 -3.5146 46 1 0.4545 -6.0264 -2.8302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327425979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = 37.904141 kcal Electronic energy + Delta-G solvation = -27628.392401 eV Core-core repulsion = 23678.549615 eV Total energy + Delta-G solvation = -3949.842787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70521 -40.42658 -40.03237 -37.89271 -35.53280 -35.30309 -34.16231 -32.81321 -31.90365 -31.64283 -30.05724 -29.01013 -27.33370 -26.48570 -24.20622 -23.79856 -23.44612 -22.76028 -21.65157 -20.55841 -19.22206 -18.72703 -18.26568 -17.87566 -17.09525 -16.99511 -16.63714 -16.52995 -16.04988 -15.99215 -15.84363 -15.40860 -15.17423 -14.85088 -14.71358 -14.49821 -14.40984 -14.36942 -14.16767 -13.80603 -13.54720 -13.14727 -12.99427 -12.80229 -12.65587 -12.53608 -12.35181 -12.30096 -12.23853 -11.93538 -11.88696 -11.54173 -11.34995 -11.25013 -10.91261 -10.85796 -10.40082 -9.96288 -9.93783 -9.43127 -8.89287 -7.89150 -5.20122 -0.06902 0.42581 1.40642 1.44793 1.48485 1.54057 1.54212 1.84297 2.30456 2.47957 2.81934 3.00227 3.05420 3.30945 3.37554 3.62363 3.67319 3.80256 3.83272 4.02088 4.04541 4.05692 4.21436 4.32468 4.36461 4.45506 4.48933 4.55466 4.63424 4.68254 4.71340 4.76530 4.78154 4.93233 4.93657 5.03681 5.06573 5.08584 5.18735 5.30330 5.44597 5.46316 5.52558 5.53090 5.54014 5.96441 6.00216 6.35289 6.41781 6.54237 6.93871 7.13973 7.61804 8.62792 9.28363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.001882 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.243055 B =14874.317626 C =15713.855383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.641 5.641 10 C 0.152 3.848 11 C 0.074 3.926 12 C 0.107 3.893 13 C -0.127 4.127 14 C 0.120 3.880 15 H 0.118 0.882 16 N -0.707 5.707 17 C 0.520 3.480 18 O -0.577 6.577 19 C -0.024 4.024 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.011 4.011 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.108 4.108 28 C 0.035 3.965 29 O -0.372 6.372 30 H 0.248 0.752 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.415 0.585 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.134 0.866 45 H 0.070 0.930 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.908 -17.403 -6.397 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.366 5.366 10 C 0.026 3.974 11 C 0.033 3.967 12 C -0.019 4.019 13 C -0.165 4.165 14 C 0.014 3.986 15 H 0.135 0.865 16 N -0.358 5.358 17 C 0.308 3.692 18 O -0.457 6.457 19 C -0.062 4.062 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.011 4.011 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.043 4.043 29 O -0.291 6.291 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.173 0.827 39 H 0.159 0.841 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.152 0.848 45 H 0.089 0.911 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.646 -17.585 -6.994 25.875 hybrid contribution 0.744 1.600 0.322 1.794 sum -16.902 -15.984 -6.672 24.201 Atomic orbital electron populations 1.69967 1.06173 1.25564 1.58040 1.25575 0.96698 1.00594 1.03074 0.85171 0.77222 0.78942 0.78110 1.20819 1.21757 1.20126 1.19226 0.90548 0.83071 1.42938 0.90321 1.45767 1.04229 1.00434 1.86211 1.22449 0.87839 0.90947 0.96156 1.23130 0.96799 0.95516 0.81252 1.22956 0.96352 0.84499 0.98060 1.23196 0.99050 0.96644 0.97620 1.22530 0.83286 0.97889 0.94859 0.86452 1.45873 1.12698 1.30846 1.46416 1.20724 0.85559 0.84485 0.78453 1.90709 1.83516 1.27976 1.43453 1.18809 0.87890 0.99277 1.00244 1.21814 0.96628 0.99122 0.97610 1.19682 0.98481 0.99477 0.98220 1.16191 0.92036 1.00154 0.92721 1.21395 1.00445 0.98374 0.93089 1.21413 0.93791 0.98534 1.00241 1.21699 0.95943 0.98419 0.96846 1.21465 1.00743 0.97565 0.93945 1.21448 0.91468 0.98909 1.00758 1.24014 0.95177 0.87757 0.97313 1.88427 1.79398 1.41975 1.19272 0.94272 0.93831 0.94179 0.94067 0.91041 0.86052 0.87270 0.74838 0.82663 0.84109 0.86434 0.83358 0.82664 0.82692 0.84807 0.91121 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.95 11.51 21.65 0.25 -56.70 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.23 -13.24 10.74 84.04 0.90 -12.34 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.64 -33.26 3.78 -738.92 -2.80 -36.06 16 10 C 0.15 6.80 6.89 83.48 0.58 7.37 16 11 C 0.07 2.61 1.75 -10.68 -0.02 2.59 16 12 C 0.11 4.23 8.20 83.39 0.68 4.91 16 13 C -0.13 -2.89 5.97 31.67 0.19 -2.70 16 14 C 0.12 2.84 3.37 46.54 0.16 3.00 16 15 H 0.12 2.56 7.74 -2.39 -0.02 2.55 16 16 N -0.71 -16.29 5.24 -435.25 -2.28 -18.57 16 17 C 0.52 13.13 7.81 87.66 0.68 13.82 16 18 O -0.58 -19.23 15.78 -3.04 -0.05 -19.28 16 19 C -0.02 -0.46 6.19 28.04 0.17 -0.29 16 20 C -0.15 -3.92 12.58 31.12 0.39 -3.53 16 21 C -0.16 -4.35 13.24 30.01 0.40 -3.95 16 22 C -0.01 -0.26 5.72 -21.41 -0.12 -0.38 16 23 C -0.11 -2.47 9.75 22.52 0.22 -2.25 16 24 C -0.12 -1.87 10.03 22.23 0.22 -1.65 16 25 C -0.11 -1.36 10.04 22.32 0.22 -1.14 16 26 C -0.12 -1.58 10.03 22.23 0.22 -1.35 16 27 C -0.11 -1.98 9.75 22.52 0.22 -1.76 16 28 C 0.03 1.02 7.49 72.67 0.54 1.56 16 29 O -0.37 -14.53 11.18 -148.98 -1.67 -16.20 16 30 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 31 H 0.04 1.85 7.95 -2.39 -0.02 1.83 16 32 H 0.04 2.08 7.13 -2.39 -0.02 2.06 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 35 H 0.12 2.15 8.13 -2.38 -0.02 2.13 16 36 H 0.11 2.15 7.81 -2.39 -0.02 2.13 16 37 H 0.41 8.75 8.62 -92.71 -0.80 7.95 16 38 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -81.69 396.07 1.82 -79.87 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.20 Total: 19.93 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.13 Total: -1.45 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.83 Total: -111.33 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.71 Total: -35.47 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -81.69 1.82 -79.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327425979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.771 kcal (2) G-P(sol) polarization free energy of solvation -81.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds