Wall clock time and date at job start Sat Apr 11 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99779 * 2 1 4 4 H 1.48497 * 109.47463 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46966 * 300.00423 * 3 2 1 6 6 H 1.48501 * 109.47245 * 60.00290 * 3 2 1 7 7 C 1.38814 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99665 * 161.23855 * 7 2 1 9 9 N 1.36939 * 119.99708 * 341.52128 * 7 2 1 10 10 C 1.47229 * 121.34069 * 333.45550 * 9 7 2 11 11 C 1.53278 * 107.62625 * 115.72503 * 10 9 7 12 12 C 1.50603 * 110.81380 * 47.65478 * 11 10 9 13 13 C 1.38977 * 117.60213 * 160.27279 * 12 11 10 14 14 C 1.37914 * 120.58146 * 179.39227 * 13 12 11 15 15 C 1.38263 * 119.82046 * 0.02562 * 14 13 12 16 16 C 1.37952 * 119.72119 * 0.19234 * 15 14 13 17 17 C 1.37661 * 122.87190 * 340.03891 * 12 11 10 18 18 C 1.46682 * 121.33580 * 153.74585 * 9 7 2 19 19 H 1.08999 * 109.43771 * 344.29677 * 18 9 7 20 20 C 1.53005 * 109.43454 * 104.16797 * 18 9 7 21 21 N 1.46501 * 109.47224 * 304.99736 * 20 18 9 22 22 C 1.34777 * 120.00074 * 180.02562 * 21 20 18 23 23 O 1.21283 * 119.99410 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.00041 * 179.97438 * 22 21 20 25 25 C 1.50698 * 109.47121 * 180.02562 * 24 22 21 26 26 C 1.34513 * 125.79208 * 89.71501 * 25 24 22 27 27 C 1.41383 * 106.83917 * 179.88822 * 26 25 24 28 28 C 1.34513 * 106.84171 * 0.37399 * 27 26 25 29 29 O 1.34303 * 125.78499 * 270.02179 * 25 24 22 30 30 H 0.96998 * 120.00188 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.78192 * 235.30993 * 10 9 7 32 32 H 1.09003 * 109.77769 * 356.11895 * 10 9 7 33 33 H 1.09001 * 109.31005 * 287.25099 * 11 10 9 34 34 H 1.09003 * 109.08150 * 167.91284 * 11 10 9 35 35 H 1.07997 * 119.70961 * 359.41735 * 13 12 11 36 36 H 1.07998 * 120.08589 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.13857 * 180.21432 * 15 14 13 38 38 H 1.08003 * 119.74505 * 179.97438 * 16 15 14 39 39 H 1.08989 * 109.47049 * 65.00095 * 20 18 9 40 40 H 1.09005 * 109.46672 * 184.99788 * 20 18 9 41 41 H 0.97001 * 120.00025 * 359.97438 * 21 20 18 42 42 H 1.09002 * 109.47207 * 300.00248 * 24 22 21 43 43 H 1.08997 * 109.46716 * 59.99994 * 24 22 21 44 44 H 1.07995 * 126.57935 * 0.02711 * 26 25 24 45 45 H 1.08001 * 126.57615 * 180.11668 * 27 26 25 46 46 H 1.07999 * 125.78974 * 179.78456 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0472 -1.2268 -0.3014 9 7 1.3786 -2.3576 0.3748 10 6 0.2304 -2.3381 1.2963 11 6 -0.9922 -2.8480 0.5252 12 6 -0.6636 -4.1127 -0.2234 13 6 -1.7229 -4.9211 -0.6181 14 6 -1.4929 -6.0870 -1.3180 15 6 -0.1979 -6.4573 -1.6305 16 6 0.8558 -5.6590 -1.2361 17 6 0.6256 -4.4865 -0.5289 18 6 1.8225 -3.6652 -0.1200 19 1 2.4768 -3.5243 -0.9804 20 6 2.5872 -4.3952 0.9860 21 7 3.6830 -3.5480 1.4631 22 6 4.4975 -3.9879 2.4427 23 8 4.3235 -5.0853 2.9288 24 6 5.6250 -3.1166 2.9332 25 6 6.3789 -3.8361 4.0217 26 6 7.4323 -4.6530 3.8413 27 6 7.8252 -5.1037 5.1225 28 6 6.9833 -4.5419 6.0084 29 8 6.1094 -3.7750 5.3360 30 1 -0.4850 0.8400 0.0004 31 1 0.4297 -2.9887 2.1478 32 1 0.0528 -1.3200 1.6427 33 1 -1.3152 -2.0854 -0.1835 34 1 -1.7998 -3.0478 1.2296 35 1 -2.7351 -4.6337 -0.3750 36 1 -2.3220 -6.7090 -1.6212 37 1 -0.0121 -7.3674 -2.1814 38 1 1.8675 -5.9481 -1.4796 39 1 1.9107 -4.6138 1.8120 40 1 2.9933 -5.3272 0.5925 41 1 3.8229 -2.6707 1.0735 42 1 6.3013 -2.8981 2.1067 43 1 5.2192 -2.1847 3.3267 44 1 7.8913 -4.9128 2.8989 45 1 8.6418 -5.7741 5.3464 46 1 7.0063 -4.6832 7.0789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328467649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:54 Heat of formation + Delta-G solvation = 11.484214 kcal Electronic energy + Delta-G solvation = -29434.990289 eV Core-core repulsion = 25484.001849 eV Total energy + Delta-G solvation = -3950.988441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.45945 -41.06396 -40.28303 -37.82355 -35.66714 -34.14537 -33.99596 -33.54826 -32.83015 -31.50361 -30.10985 -28.90082 -27.63456 -25.71713 -24.16770 -23.57860 -22.70623 -22.64131 -21.93352 -21.06871 -20.21154 -18.78441 -18.28360 -18.01505 -17.30393 -17.10584 -16.70556 -16.61800 -16.40837 -15.98401 -15.70607 -15.58005 -15.16712 -15.02938 -14.62181 -14.38607 -13.93715 -13.90197 -13.79613 -13.70457 -13.59137 -13.51117 -13.29398 -12.90991 -12.74414 -12.70860 -12.61394 -12.54105 -12.21465 -12.02017 -11.77806 -11.53977 -11.23844 -11.00421 -10.79431 -10.47170 -9.97430 -9.56612 -9.37337 -9.30115 -8.66777 -7.81542 -5.26398 0.56858 0.61845 0.79313 1.52551 1.57080 1.64015 1.65091 1.71783 2.08483 2.49365 2.55100 2.97878 3.35622 3.57627 3.65819 3.95842 4.02446 4.08322 4.16642 4.17147 4.18332 4.31081 4.36332 4.40688 4.42975 4.49015 4.58481 4.66575 4.77882 4.80975 4.94390 4.97906 4.98547 5.03850 5.11882 5.23311 5.24359 5.25958 5.51607 5.56257 5.64166 5.65731 5.69296 5.70487 5.85437 5.99975 6.23945 6.26160 6.41029 6.65580 7.15177 7.29778 7.83568 8.41760 9.24423 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.003831 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.564187 B = 7306.884545 C = 9685.547505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.039 4.039 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.303 1.303 6 H -0.299 1.299 7 C -0.257 4.257 8 H 0.084 0.916 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.084 4.084 12 C -0.072 4.072 13 C -0.142 4.142 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.103 4.103 18 C 0.198 3.802 19 H 0.079 0.921 20 C 0.129 3.871 21 N -0.701 5.701 22 C 0.509 3.491 23 O -0.588 6.588 24 C -0.058 4.058 25 C -0.015 4.015 26 C -0.209 4.209 27 C -0.226 4.226 28 C -0.048 4.048 29 O -0.198 6.198 30 H 0.246 0.754 31 H 0.004 0.996 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.415 0.585 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -9.410 2.946 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.236 4.236 3 Si 0.788 3.212 4 H -0.180 1.180 5 H -0.231 1.231 6 H -0.227 1.227 7 C -0.386 4.386 8 H 0.101 0.899 9 N -0.310 5.310 10 C 0.045 3.955 11 C -0.122 4.122 12 C -0.073 4.073 13 C -0.161 4.161 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.105 4.105 18 C 0.090 3.910 19 H 0.097 0.903 20 C 0.002 3.998 21 N -0.353 5.353 22 C 0.296 3.704 23 O -0.469 6.469 24 C -0.097 4.097 25 C -0.065 4.065 26 C -0.228 4.228 27 C -0.244 4.244 28 C -0.114 4.114 29 O -0.094 6.094 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.174 0.826 43 H 0.142 0.858 44 H 0.177 0.823 45 H 0.189 0.811 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.528 -9.826 3.378 13.442 hybrid contribution -0.088 1.416 -0.175 1.430 sum 8.440 -8.410 3.203 12.338 Atomic orbital electron populations 1.70143 1.06516 1.25366 1.54366 1.25651 0.95822 1.01000 1.01144 0.85353 0.79444 0.80505 0.75940 1.17997 1.23111 1.22683 1.19457 0.93648 0.84973 1.40527 0.89886 1.44210 1.35571 1.00795 1.50387 1.20701 0.86222 0.98943 0.89626 1.20810 0.98866 0.93875 0.98680 1.19882 0.93248 0.96093 0.98041 1.21391 0.98519 0.95845 1.00299 1.21328 0.97958 0.96487 0.98379 1.21331 0.92413 1.00474 1.00788 1.21344 1.00373 0.93980 0.98488 1.20140 0.94682 0.96258 0.99376 1.19635 0.91994 0.85285 0.94044 0.90345 1.21646 0.87954 0.93235 0.96963 1.45874 1.30009 1.21483 1.37907 1.20893 0.83476 0.86989 0.79039 1.90675 1.73915 1.23639 1.58634 1.20185 0.95645 0.98076 0.95782 1.21894 0.98707 1.03576 0.82309 1.21859 0.99595 1.01095 1.00250 1.22166 1.04184 1.05859 0.92229 1.24778 0.90983 0.95821 0.99855 1.83986 1.49708 1.56835 1.18914 0.94419 0.97781 0.91485 0.91456 0.92430 0.85786 0.83673 0.83392 0.84765 0.94722 0.91349 0.74753 0.82628 0.85842 0.82284 0.81117 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 10.13 21.65 0.22 -49.07 16 2 C -0.04 -1.96 4.94 84.86 0.42 -1.54 16 3 Si 0.96 40.68 29.59 68.60 2.03 42.71 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.26 -12.07 8.71 84.03 0.73 -11.33 16 8 H 0.08 3.60 7.31 -2.91 -0.02 3.57 16 9 N -0.59 -26.10 2.30 -679.18 -1.56 -27.66 16 10 C 0.17 7.84 5.49 86.33 0.47 8.32 16 11 C -0.08 -3.59 5.78 29.91 0.17 -3.42 16 12 C -0.07 -2.82 5.76 -19.85 -0.11 -2.93 16 13 C -0.14 -4.67 9.59 22.37 0.21 -4.45 16 14 C -0.12 -3.36 10.05 22.20 0.22 -3.14 16 15 C -0.13 -3.49 10.05 22.21 0.22 -3.27 16 16 C -0.12 -3.76 9.34 22.35 0.21 -3.55 16 17 C -0.10 -3.81 5.17 -19.82 -0.10 -3.91 16 18 C 0.20 7.53 2.50 44.25 0.11 7.64 16 19 H 0.08 2.92 7.98 -2.39 -0.02 2.90 16 20 C 0.13 4.57 5.00 86.38 0.43 5.01 16 21 N -0.70 -22.99 5.39 -463.06 -2.49 -25.48 16 22 C 0.51 16.71 7.82 87.66 0.69 17.40 16 23 O -0.59 -24.07 16.03 -3.04 -0.05 -24.12 16 24 C -0.06 -1.42 6.23 29.10 0.18 -1.24 16 25 C -0.01 -0.41 5.81 24.83 0.14 -0.27 16 26 C -0.21 -5.21 10.81 22.19 0.24 -4.98 16 27 C -0.23 -4.92 10.91 22.19 0.24 -4.68 16 28 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 29 O -0.20 -5.77 10.65 -2.51 -0.03 -5.80 16 30 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 31 H 0.00 0.19 7.46 -2.39 -0.02 0.17 16 32 H 0.07 3.46 5.92 -2.39 -0.01 3.44 16 33 H 0.07 3.33 7.15 -2.39 -0.02 3.31 16 34 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 35 H 0.12 3.66 8.05 -2.91 -0.02 3.63 16 36 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.13 3.46 8.05 -2.91 -0.02 3.43 16 39 H 0.03 1.41 7.53 -2.39 -0.02 1.39 16 40 H 0.07 2.28 8.03 -2.38 -0.02 2.26 16 41 H 0.41 13.07 6.69 -92.71 -0.62 12.45 16 42 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.12 2.76 8.14 -2.39 -0.02 2.75 16 44 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 45 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 46 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -66.94 378.64 3.80 -63.14 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.38 Total: 36.87 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.30 Total: -10.59 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.84 Total: -102.21 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.08 Total: -29.92 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -66.94 3.80 -63.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328467649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.627 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds