Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48504 * 109.46903 * 270.00295 * 3 2 1 5 5 H 1.48498 * 109.47179 * 30.00358 * 3 2 1 6 6 H 1.48501 * 109.47103 * 150.00418 * 3 2 1 7 7 C 1.39951 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99833 * 197.84268 * 7 2 1 9 9 C 1.41399 * 120.00032 * 17.84526 * 7 2 1 10 10 C 1.40714 * 120.24354 * 204.38668 * 9 7 2 11 11 C 1.37620 * 119.74333 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24816 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74961 * 179.97438 * 12 11 10 14 14 N 1.46493 * 109.47071 * 89.99665 * 13 12 11 15 15 C 1.34779 * 119.99961 * 180.02562 * 14 13 12 16 16 O 1.21586 * 119.99877 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00194 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00028 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47109 * 179.97438 * 18 17 15 20 20 C 1.38263 * 119.99845 * 260.02432 * 19 18 17 21 21 C 1.38216 * 119.99753 * 179.97438 * 20 19 18 22 22 C 1.38257 * 120.00222 * 359.74580 * 21 20 19 23 23 C 1.38218 * 119.99551 * 0.50550 * 22 21 20 24 24 C 1.38210 * 120.00259 * 79.99682 * 19 18 17 25 25 C 1.50703 * 119.99884 * 0.02562 * 24 19 18 26 26 O 1.42894 * 109.47138 * 180.02562 * 25 24 19 27 27 C 1.38633 * 120.50527 * 0.25189 * 12 11 10 28 28 C 1.37621 * 120.24346 * 359.44696 * 27 12 11 29 29 H 0.96993 * 120.00455 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.12634 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.87439 * 179.97438 * 11 10 9 32 32 H 1.09008 * 109.46789 * 329.99786 * 13 12 11 33 33 H 1.09000 * 109.46984 * 210.00071 * 13 12 11 34 34 H 0.96998 * 120.00317 * 0.02562 * 14 13 12 35 35 H 0.97004 * 119.99622 * 359.97438 * 17 15 14 36 36 H 1.09003 * 109.46872 * 60.00105 * 18 17 15 37 37 H 1.08994 * 109.47453 * 299.99840 * 18 17 15 38 38 H 1.07997 * 120.00125 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.99456 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.00356 * 180.27975 * 22 21 20 41 41 H 1.08004 * 119.99887 * 179.76675 * 23 22 21 42 42 H 1.09000 * 109.46869 * 300.01902 * 25 24 19 43 43 H 1.09006 * 109.46753 * 60.01892 * 25 24 19 44 44 H 0.96706 * 114.00141 * 179.97438 * 26 25 24 45 45 H 1.07993 * 119.87917 * 179.70235 * 27 12 11 46 46 H 1.08002 * 120.12902 * 180.26954 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3521 -2.4069 -0.3763 10 6 1.8259 -3.6500 0.0824 11 6 1.1799 -4.8066 -0.2901 12 6 0.0668 -4.7503 -1.1146 13 6 -0.6317 -6.0239 -1.5160 14 7 -1.6747 -6.3385 -0.5366 15 6 -2.4341 -7.4411 -0.6915 16 8 -2.2538 -8.1745 -1.6444 17 7 -3.3940 -7.7303 0.2093 18 6 -4.2198 -8.9285 0.0406 19 6 -5.2087 -9.0207 1.1740 20 6 -4.9598 -9.8633 2.2416 21 6 -5.8665 -9.9475 3.2814 22 6 -7.0197 -9.1853 3.2565 23 6 -7.2709 -8.3469 2.1868 24 6 -6.3640 -8.2627 1.1467 25 6 -6.6352 -7.3442 -0.0170 26 8 -7.8810 -6.6743 0.1853 27 6 -0.4054 -3.5317 -1.5772 28 6 0.2211 -2.3619 -1.2124 29 1 -0.4850 0.8399 0.0004 30 1 2.6936 -3.6961 0.7238 31 1 1.5420 -5.7618 0.0604 32 1 0.0912 -6.8390 -1.5515 33 1 -1.0836 -5.8959 -2.4997 34 1 -1.8188 -5.7532 0.2234 35 1 -3.5381 -7.1450 0.9693 36 1 -3.5820 -9.8125 0.0424 37 1 -4.7565 -8.8696 -0.9063 38 1 -4.0571 -10.4557 2.2631 39 1 -5.6719 -10.6054 4.1155 40 1 -7.7260 -9.2477 4.0712 41 1 -8.1736 -7.7542 2.1655 42 1 -5.8349 -6.6080 -0.0929 43 1 -6.6811 -7.9272 -0.9369 44 1 -8.1201 -6.0649 -0.5266 45 1 -1.2705 -3.4999 -2.2228 46 1 -0.1509 -1.4132 -1.5704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364306421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -45.513550 kcal Electronic energy + Delta-G solvation = -27559.383538 eV Core-core repulsion = 23605.923489 eV Total energy + Delta-G solvation = -3953.460049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27972 -39.37698 -37.72527 -36.91174 -35.20740 -34.52504 -33.42625 -31.96691 -31.44550 -30.18278 -29.36675 -27.29516 -26.45941 -25.58557 -23.54632 -22.22107 -21.11085 -21.06357 -20.69041 -20.09802 -18.31104 -17.72793 -17.40568 -16.86366 -16.18868 -15.64866 -15.42167 -15.26762 -15.11676 -14.92617 -14.45301 -14.19732 -14.03585 -13.92820 -13.83128 -13.41393 -13.10440 -12.87361 -12.68874 -12.53128 -12.38070 -12.05178 -11.92142 -11.68945 -11.29835 -11.18894 -11.09002 -11.05701 -10.71951 -10.65199 -10.46742 -10.08157 -9.71248 -9.49557 -9.26028 -9.15833 -9.10079 -8.92275 -8.47586 -7.58751 -7.46808 -6.88743 -4.48132 0.92345 1.11417 2.51202 2.93092 2.97352 3.01539 3.04019 3.20402 3.45290 3.57075 3.82192 3.84091 4.41200 4.43582 4.53126 4.71857 4.72861 4.79948 4.98757 5.11411 5.15133 5.30813 5.44602 5.53388 5.58826 5.70598 5.80087 5.80441 5.94226 6.15586 6.23347 6.24067 6.29412 6.32532 6.34668 6.47146 6.69199 6.85398 6.89923 6.96399 7.14084 7.19143 7.25551 7.28024 7.49891 7.73198 7.94289 8.00587 8.17860 8.29348 8.52405 8.77298 8.84163 8.85421 10.05258 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.002044 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.425682 B =13692.461263 C =14469.336732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.244 4.244 13 C 0.203 3.797 14 N -0.734 5.734 15 C 0.699 3.301 16 O -0.601 6.601 17 N -0.749 5.749 18 C 0.180 3.820 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.100 4.100 24 C -0.072 4.072 25 C 0.113 3.887 26 O -0.571 6.571 27 C -0.081 4.081 28 C -0.170 4.170 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.088 0.912 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -12.712 4.076 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.250 4.250 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.081 3.919 14 N -0.388 5.388 15 C 0.399 3.601 16 O -0.480 6.480 17 N -0.406 5.406 18 C 0.056 3.944 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.073 4.073 25 C 0.036 3.964 26 O -0.377 6.377 27 C -0.100 4.100 28 C -0.189 4.189 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.233 0.767 45 H 0.106 0.894 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.734 -13.585 3.713 19.671 hybrid contribution 0.188 1.655 0.361 1.704 sum -13.546 -11.930 4.074 18.504 Atomic orbital electron populations 1.69815 1.07644 1.29448 1.34342 1.25952 0.94758 1.01487 0.92121 0.86285 0.80518 0.80373 0.79442 1.19160 1.20243 1.18534 1.19671 0.98231 0.91277 1.39527 0.90254 1.17676 0.90891 0.92054 0.88029 1.20980 1.03973 0.92819 1.07182 1.20414 0.95129 0.96497 0.96759 1.19004 1.01978 0.92772 1.10855 1.19806 0.87322 0.94784 0.89991 1.45741 1.37436 1.25375 1.30227 1.16099 0.79364 0.82084 0.82579 1.90889 1.72797 1.51737 1.32625 1.45198 1.37809 1.28465 1.29118 1.19935 0.90686 0.88218 0.95567 1.19647 0.95303 0.98587 0.96875 1.21058 0.99327 0.98252 0.93064 1.21182 0.94562 0.99731 0.98674 1.21250 0.97425 0.96398 0.98298 1.21018 0.99559 0.98245 0.92926 1.19614 0.94434 0.97050 0.96187 1.20945 0.86216 0.93987 0.95238 1.86388 1.38982 1.61970 1.50408 1.20560 0.98026 0.92560 0.98824 1.21315 0.99566 0.96770 1.01249 0.90709 0.88913 0.89365 0.92637 0.92602 0.76945 0.77000 0.90783 0.90977 0.85547 0.85861 0.85928 0.84913 0.91676 0.92005 0.76718 0.89414 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.95 55.55 0.61 -18.86 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 2.96 5.57 -106.82 -0.60 2.37 16 10 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 11 C -0.07 -1.46 9.67 -39.66 -0.38 -1.85 16 12 C -0.24 -4.98 5.27 -104.33 -0.55 -5.53 16 13 C 0.20 3.66 5.79 -5.19 -0.03 3.63 16 14 N -0.73 -11.67 5.55 -66.41 -0.37 -12.04 16 15 C 0.70 11.07 8.57 -86.92 -0.74 10.32 16 16 O -0.60 -11.70 16.34 5.29 0.09 -11.61 16 17 N -0.75 -8.95 5.36 -66.42 -0.36 -9.31 16 18 C 0.18 1.93 5.21 -5.20 -0.03 1.91 16 19 C -0.10 -1.00 5.25 -104.62 -0.55 -1.55 16 20 C -0.10 -0.87 9.67 -39.58 -0.38 -1.25 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.10 -0.97 9.38 -39.58 -0.37 -1.34 16 24 C -0.07 -0.72 5.88 -104.62 -0.62 -1.33 16 25 C 0.11 1.03 6.28 36.01 0.23 1.26 16 26 O -0.57 -4.98 12.14 -35.23 -0.43 -5.40 16 27 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 28 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 29 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 30 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.06 1.01 8.08 -51.92 -0.42 0.59 16 33 H 0.06 1.02 8.08 -51.93 -0.42 0.61 16 34 H 0.40 5.88 8.48 -40.82 -0.35 5.54 16 35 H 0.40 4.13 8.48 -40.82 -0.35 3.78 16 36 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 37 H 0.07 0.80 7.06 -51.93 -0.37 0.43 16 38 H 0.13 0.96 8.04 -52.49 -0.42 0.54 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 1.27 7.01 -52.48 -0.37 0.91 16 42 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 43 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 44 H 0.39 1.77 9.12 45.56 0.42 2.19 16 45 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -29.88 390.72 -11.43 -41.31 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -5.48 Total: 15.98 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -6.35 Total: -18.87 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: -0.12 Total: -40.21 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.34 Total: -17.01 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.88 -11.43 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364306421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.204 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds