Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00499 * 2 1 4 4 H 1.48499 * 109.47450 * 240.00096 * 3 2 1 5 5 H 1.48502 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47291 * 120.00195 * 3 2 1 7 7 C 1.38816 * 119.99339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99453 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00450 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00303 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47205 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47156 * 295.00440 * 11 10 9 13 13 N 1.46496 * 109.46938 * 55.00723 * 11 10 9 14 14 C 1.34780 * 119.99773 * 244.80209 * 13 11 10 15 15 O 1.21290 * 119.99695 * 355.04127 * 14 13 11 16 16 C 1.50700 * 120.00031 * 174.76709 * 14 13 11 17 17 C 1.52998 * 109.46951 * 180.27216 * 16 14 13 18 18 F 1.39898 * 109.47601 * 299.99886 * 17 16 14 19 19 F 1.39903 * 109.47277 * 60.00359 * 17 16 14 20 20 C 1.53004 * 109.47108 * 179.97438 * 17 16 14 21 21 F 1.39893 * 109.46870 * 60.00081 * 20 17 16 22 22 F 1.39901 * 109.47295 * 180.02562 * 20 17 16 23 23 C 1.53005 * 109.46829 * 175.00480 * 11 10 9 24 24 C 1.54268 * 110.03346 * 297.06573 * 23 11 10 25 25 C 1.54966 * 104.15892 * 217.14065 * 24 23 11 26 26 C 1.54884 * 102.77946 * 37.89001 * 25 24 23 27 27 C 1.53879 * 110.02912 * 179.84931 * 23 11 10 28 28 H 0.97001 * 119.99339 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00003 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46989 * 60.00604 * 10 9 7 31 31 H 1.09002 * 109.47399 * 300.00385 * 10 9 7 32 32 H 0.96994 * 120.00384 * 64.80179 * 13 11 10 33 33 H 1.08993 * 109.46904 * 300.27448 * 16 14 13 34 34 H 1.09003 * 109.46930 * 60.27451 * 16 14 13 35 35 H 1.09002 * 109.47019 * 300.00501 * 20 17 16 36 36 H 1.08994 * 110.02045 * 58.46024 * 23 11 10 37 37 H 1.09009 * 110.48252 * 335.78575 * 24 23 11 38 38 H 1.09000 * 110.48723 * 98.42696 * 24 23 11 39 39 H 1.08995 * 110.72014 * 279.57350 * 25 24 23 40 40 H 1.08998 * 110.91912 * 156.29475 * 25 24 23 41 41 H 1.08999 * 110.48894 * 203.40840 * 26 25 24 42 42 H 1.08997 * 110.60635 * 80.81241 * 26 25 24 43 43 H 1.08994 * 110.03117 * 238.56492 * 27 23 11 44 44 H 1.08998 * 110.02960 * 359.95182 * 27 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 1 0.4975 -4.8142 0.9295 13 7 0.1437 -4.6753 -1.1331 14 6 -1.1690 -4.4649 -0.9116 15 8 -1.6037 -4.4847 0.2206 16 6 -2.0955 -4.1989 -2.0699 17 6 -3.5181 -3.9892 -1.5473 18 9 -3.9393 -5.1370 -0.8674 19 9 -3.5378 -2.8963 -0.6741 20 6 -4.4587 -3.7185 -2.7233 21 9 -4.4392 -4.8109 -3.5970 22 9 -5.7595 -3.5261 -2.2455 23 6 1.8242 -6.1412 -0.1289 24 6 2.5716 -6.1934 -1.4774 25 6 2.4512 -7.6735 -1.9204 26 6 1.0162 -8.0489 -1.4748 27 6 0.8359 -7.3206 -0.1268 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 2.6851 -3.7151 0.8879 31 1 2.6838 -3.7143 -0.8921 32 1 0.4793 -4.7311 -2.0414 33 1 -1.7675 -3.3047 -2.5996 34 1 -2.0803 -5.0504 -2.7503 35 1 -4.1305 -2.8240 -3.2527 36 1 2.5313 -6.2451 0.6941 37 1 2.0926 -5.5376 -2.2046 38 1 3.6178 -5.9179 -1.3447 39 1 3.1888 -8.2907 -1.4076 40 1 2.5566 -7.7661 -3.0013 41 1 0.9281 -9.1270 -1.3405 42 1 0.2841 -7.6947 -2.2005 43 1 1.0639 -7.9973 0.6966 44 1 -0.1856 -6.9516 -0.0346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484009321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -237.178785 kcal Electronic energy + Delta-G solvation = -31911.462607 eV Core-core repulsion = 26977.065365 eV Total energy + Delta-G solvation = -4934.397242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.85255 -48.54780 -47.51316 -46.90416 -40.01389 -38.07096 -35.23583 -33.51826 -32.84456 -31.16832 -29.77989 -28.71981 -27.69649 -26.17630 -23.46814 -22.58666 -21.56137 -20.91686 -20.11348 -19.26012 -18.50874 -18.45608 -17.80945 -17.17673 -16.73329 -16.56262 -16.35436 -15.73800 -15.60382 -14.88988 -14.59790 -14.52243 -14.38612 -14.25470 -13.78492 -13.72878 -13.54962 -13.43265 -13.32570 -13.26077 -13.24762 -12.91168 -12.83300 -12.23358 -12.18117 -12.04267 -11.73838 -11.17730 -11.09266 -11.04128 -10.91980 -10.82157 -10.69820 -10.61959 -10.48801 -10.35759 -10.09418 -9.71110 -9.65686 -8.87582 -8.66156 -6.91338 -5.74166 -3.03939 2.52603 2.85082 3.28366 3.42879 3.47919 3.48925 3.56948 3.64341 3.86407 3.98584 4.52805 4.58737 4.61921 4.65388 4.67998 4.75592 4.91052 5.17256 5.24201 5.31412 5.41611 5.46503 5.56364 5.59540 5.64388 5.68337 5.82826 5.89312 5.93559 6.04394 6.12202 6.22347 6.28083 6.32612 6.44482 6.48395 6.68197 6.92814 7.68451 7.71927 8.43220 8.46209 9.54650 10.12798 10.47995 11.47502 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007183 B = 0.005315 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3896.964504 B = 5266.486927 C = 8454.626284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.728 5.728 10 C 0.142 3.858 11 C 0.138 3.862 12 H 0.101 0.899 13 N -0.704 5.704 14 C 0.525 3.475 15 O -0.519 6.519 16 C -0.194 4.194 17 C 0.274 3.726 18 F -0.174 7.174 19 F -0.157 7.157 20 C 0.234 3.766 21 F -0.184 7.184 22 F -0.183 7.183 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.397 0.603 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -14.958 -9.427 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.373 5.373 10 C 0.013 3.987 11 C 0.034 3.966 12 H 0.119 0.881 13 N -0.356 5.356 14 C 0.309 3.691 15 O -0.394 6.394 16 C -0.234 4.234 17 C 0.235 3.765 18 F -0.155 7.155 19 F -0.137 7.137 20 C 0.179 3.821 21 F -0.165 7.165 22 F -0.164 7.164 23 C -0.118 4.118 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.157 4.157 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.232 0.768 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.897 -14.844 -8.543 17.370 hybrid contribution 0.231 0.978 -0.338 1.060 sum -2.665 -13.866 -8.881 16.681 Atomic orbital electron populations 1.69676 1.04975 1.25667 1.57269 1.24744 0.95494 0.97573 1.03003 0.86302 0.78519 0.83747 0.77773 1.21399 1.21713 1.21316 1.19151 0.90887 0.84186 1.43160 0.91380 1.42292 1.06003 0.99630 1.89399 1.21045 0.93241 0.85947 0.98433 1.21376 0.90792 0.93867 0.90604 0.88098 1.45665 1.06653 1.73100 1.10137 1.19641 0.83074 0.76879 0.89507 1.90808 1.75800 1.49755 1.23082 1.22795 0.91873 1.08042 1.00718 1.21463 0.94562 0.75242 0.85200 1.93103 1.91087 1.49593 1.81733 1.93216 1.97078 1.52895 1.70541 1.22920 0.80843 0.90239 0.88105 1.93036 1.96406 1.57342 1.69762 1.93067 1.39016 1.95416 1.88945 1.22091 0.96997 0.94182 0.98510 1.22428 1.00425 0.96109 0.96550 1.22510 0.96831 0.96564 1.00301 1.22323 0.96839 0.99538 0.97203 1.22161 0.99987 0.96378 0.97133 0.93484 0.77981 0.95537 0.95895 0.76784 0.84699 0.85558 0.83725 0.89926 0.91559 0.91365 0.91752 0.91915 0.92225 0.91986 0.92181 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -18.14 5.43 -59.91 -0.33 -18.46 16 10 C 0.14 2.71 5.84 -4.04 -0.02 2.69 16 11 C 0.14 2.17 2.04 -67.93 -0.14 2.03 16 12 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 13 N -0.70 -10.07 3.75 -53.80 -0.20 -10.27 16 14 C 0.52 8.52 6.70 -10.98 -0.07 8.45 16 15 O -0.52 -10.79 14.17 5.55 0.08 -10.71 16 16 C -0.19 -2.33 5.18 -27.88 -0.14 -2.48 16 17 C 0.27 3.87 1.40 -26.73 -0.04 3.83 16 18 F -0.17 -2.84 16.11 2.25 0.04 -2.81 16 19 F -0.16 -2.86 16.12 2.25 0.04 -2.83 16 20 C 0.23 2.51 4.83 37.16 0.18 2.68 16 21 F -0.18 -1.91 16.80 2.25 0.04 -1.88 16 22 F -0.18 -2.38 17.30 2.25 0.04 -2.34 16 23 C -0.10 -1.18 2.81 -89.50 -0.25 -1.43 16 24 C -0.12 -1.22 5.13 -25.03 -0.13 -1.35 16 25 C -0.12 -1.10 6.91 -24.70 -0.17 -1.28 16 26 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 27 C -0.12 -1.35 6.19 -25.61 -0.16 -1.51 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.39 10.38 6.80 -40.82 -0.28 10.10 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 32 H 0.40 4.65 6.96 -40.82 -0.28 4.37 16 33 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.13 1.06 7.80 -51.93 -0.41 0.65 16 35 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.69 5.96 -51.92 -0.31 0.38 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.92 7.12 -51.93 -0.37 0.55 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -34.71 369.22 -6.55 -41.26 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.15 Total: 9.45 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.36 Total: 3.04 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.20 Total: -56.01 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -10.00 SS G_CDS: 0.15 Total: -9.85 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.71 -6.55 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484009321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.918 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds