Wall clock time and date at job start Sat Apr 11 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38236 * 119.99565 * 2 1 4 4 C 1.38237 * 119.99628 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99970 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99958 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47130 * 329.76542 * 6 5 4 8 8 C 1.53000 * 109.46965 * 89.76760 * 6 5 4 9 9 N 1.46495 * 109.47037 * 209.76525 * 6 5 4 10 10 C 1.46501 * 120.00252 * 103.83625 * 9 6 5 11 11 S 1.65598 * 120.00257 * 283.83174 * 9 6 5 12 12 O 1.42103 * 106.40236 * 144.81049 * 11 9 6 13 13 O 1.42102 * 106.40196 * 11.89534 * 11 9 6 14 14 N 1.65601 * 107.22243 * 258.35488 * 11 9 6 15 15 C 1.46498 * 119.99618 * 273.54132 * 14 11 9 16 16 C 1.46497 * 120.00075 * 93.53953 * 14 11 9 17 17 H 1.08998 * 109.47048 * 355.75765 * 16 14 11 18 18 C 1.52995 * 109.47392 * 235.75162 * 16 14 11 19 19 C 1.50707 * 109.46935 * 115.75155 * 16 14 11 20 20 H 1.07994 * 119.99619 * 0.02562 * 19 16 14 21 21 C 1.37875 * 119.99979 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00120 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99808 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47215 * 60.00190 * 23 21 19 25 25 H 1.48504 * 109.46803 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47220 * 299.99542 * 23 21 19 27 27 C 1.38238 * 119.99906 * 0.25001 * 5 4 3 28 28 C 1.38231 * 119.99909 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47408 * 89.99941 * 1 2 3 30 30 H 1.08999 * 109.46769 * 209.99838 * 1 2 3 31 31 H 1.09002 * 109.46638 * 329.99300 * 1 2 3 32 32 H 1.07993 * 120.00588 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99830 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47211 * 281.99774 * 8 6 5 35 35 H 1.08997 * 109.47321 * 41.99683 * 8 6 5 36 36 H 1.08998 * 109.47419 * 161.99692 * 8 6 5 37 37 H 1.08993 * 109.47191 * 265.09118 * 10 9 6 38 38 H 1.09010 * 109.46698 * 25.08674 * 10 9 6 39 39 H 1.08994 * 109.47281 * 145.08514 * 10 9 6 40 40 H 1.08999 * 109.47556 * 269.99559 * 15 14 11 41 41 H 1.09007 * 109.47404 * 30.00325 * 15 14 11 42 42 H 1.09003 * 109.47085 * 149.99970 * 15 14 11 43 43 H 1.09001 * 109.47433 * 180.02562 * 18 16 14 44 44 H 1.08996 * 109.47053 * 300.00562 * 18 16 14 45 45 H 1.08997 * 109.46753 * 60.00040 * 18 16 14 46 46 H 0.96996 * 120.00283 * 180.02562 * 22 21 19 47 47 H 1.07998 * 119.99526 * 179.73158 * 27 5 4 48 48 H 1.07997 * 120.00421 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 1 6.1416 0.8882 -0.5201 8 6 6.2898 0.0053 1.4393 9 7 6.2665 -1.1986 -0.6894 10 6 6.7957 -1.0981 -2.0518 11 16 6.2199 -2.6671 0.0745 12 8 5.9356 -3.6324 -0.9288 13 8 5.4167 -2.4912 1.2335 14 7 7.7527 -2.9889 0.6123 15 6 8.7184 -3.6414 -0.2754 16 6 8.1430 -2.6212 1.9755 17 1 7.3251 -2.0834 2.4550 18 6 9.3829 -1.7262 1.9272 19 6 8.4540 -3.8681 2.7627 20 1 8.3697 -4.8375 2.2941 21 6 8.8460 -3.7714 4.0810 22 7 8.9481 -2.5909 4.6517 23 14 9.2321 -5.3169 5.0564 24 1 10.3470 -6.0488 4.4034 25 1 9.6264 -4.9442 6.4388 26 1 8.0291 -6.1864 5.1029 27 6 3.5805 -1.1971 -0.0074 28 6 2.1982 -1.1971 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1325 -0.0010 34 1 6.2098 1.0120 1.8496 35 1 5.6914 -0.6801 2.0394 36 1 7.3324 -0.3122 1.4565 37 1 6.0048 -1.3257 -2.7664 38 1 7.1622 -0.0863 -2.2255 39 1 7.6138 -1.8074 -2.1770 40 1 8.6467 -4.7227 -0.1584 41 1 8.5011 -3.3726 -1.3092 42 1 9.7262 -3.3144 -0.0191 43 1 9.6736 -1.4529 2.9416 44 1 10.2007 -2.2640 1.4477 45 1 9.1580 -0.8243 1.3579 46 1 9.2243 -2.5228 5.5790 47 1 4.1206 -2.1323 -0.0126 48 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282929751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:53 Heat of formation + Delta-G solvation = -29.066242 kcal Electronic energy + Delta-G solvation = -29903.979079 eV Core-core repulsion = 26086.676190 eV Total energy + Delta-G solvation = -3817.302889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.65329 -37.06622 -36.51012 -36.21508 -35.33792 -32.84715 -32.56868 -30.80636 -30.42369 -29.06150 -26.63551 -25.80194 -25.53067 -25.08763 -23.00712 -22.44216 -20.86956 -20.38793 -18.28590 -17.58425 -16.82723 -16.45315 -16.08755 -15.69818 -15.17374 -15.13687 -14.58275 -14.16006 -13.91963 -13.80575 -13.53534 -13.47146 -13.38354 -13.11255 -12.90753 -12.79325 -12.47749 -12.23884 -12.17343 -12.00940 -11.79284 -11.63512 -11.52188 -11.41034 -11.27215 -11.14831 -11.02619 -10.89549 -10.75204 -10.51804 -10.43066 -10.26335 -10.24371 -9.99777 -9.28939 -8.93411 -8.74770 -8.44434 -8.35180 -7.98296 -6.07281 -4.13552 1.11584 1.47027 1.56389 3.30533 3.34773 3.37791 3.42121 3.87318 3.97829 4.40495 4.76076 4.79623 4.87157 4.93313 5.03013 5.11937 5.23707 5.29362 5.38387 5.47528 5.50303 5.53379 5.55663 5.68130 5.75970 5.78164 5.81991 5.87437 6.09609 6.10107 6.14366 6.16644 6.27634 6.35404 6.52112 6.56645 6.59075 6.69623 6.73955 6.79481 6.86354 6.95840 7.02374 7.12854 7.44967 7.63552 7.79005 8.03073 8.27490 8.88072 9.52123 10.98152 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015195 B = 0.004021 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.254838 B = 6961.428762 C = 7463.794351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.109 4.109 5 C -0.095 4.095 6 C 0.201 3.799 7 H 0.093 0.907 8 C -0.204 4.204 9 N -1.012 6.012 10 C 0.098 3.902 11 S 2.775 3.225 12 O -0.996 6.996 13 O -0.960 6.960 14 N -0.991 5.991 15 C 0.106 3.894 16 C 0.265 3.735 17 H 0.068 0.932 18 C -0.150 4.150 19 C -0.522 4.522 20 H 0.060 0.940 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.090 4.090 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.034 0.966 45 H 0.013 0.987 46 H 0.264 0.736 47 H 0.107 0.893 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 9.129 -11.702 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.127 4.127 5 C -0.097 4.097 6 C 0.095 3.905 7 H 0.111 0.889 8 C -0.262 4.262 9 N -0.850 5.850 10 C -0.048 4.048 11 S 2.786 3.214 12 O -0.980 6.980 13 O -0.944 6.944 14 N -0.834 5.834 15 C -0.041 4.041 16 C 0.162 3.838 17 H 0.085 0.915 18 C -0.210 4.210 19 C -0.562 4.562 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.109 4.109 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.124 0.876 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.327 8.660 -11.448 16.595 hybrid contribution 0.720 -0.640 0.527 1.098 sum -7.608 8.020 -10.921 15.539 Atomic orbital electron populations 1.20764 0.91438 1.02632 1.02002 1.19881 0.95876 0.93221 1.00426 1.20907 0.94022 0.97239 1.02052 1.20844 0.94084 0.97007 1.00785 1.20248 0.95859 0.93468 1.00133 1.19665 0.88794 0.87869 0.94187 0.88950 1.22937 1.03892 1.04775 0.94585 1.58289 1.77108 1.25166 1.24412 1.21436 0.98250 1.02784 0.82358 1.02317 0.73594 0.72592 0.72912 1.93546 1.84409 1.58783 1.61249 1.93611 1.66320 1.85566 1.48931 1.57728 1.30165 1.72439 1.23038 1.21224 0.94530 0.97672 0.90641 1.18843 0.94827 0.95180 0.74911 0.91486 1.22169 0.99192 0.96496 1.03095 1.21328 1.46133 0.92808 0.95935 0.92165 1.24877 0.95199 0.96263 0.97372 1.69833 1.47472 1.22470 1.13057 0.86585 0.78841 0.83241 0.78925 1.20246 1.21178 1.20147 1.21218 0.94387 0.97551 0.97698 1.21003 0.94015 0.97608 1.00932 0.91454 0.91613 0.91723 0.86262 0.85998 0.91097 0.87745 0.90031 0.92802 0.91036 0.91780 0.93162 0.93550 0.90784 0.88777 0.94717 0.96801 0.92653 0.87568 0.86151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.11 -1.39 9.70 -39.58 -0.38 -1.78 16 5 C -0.10 -1.47 4.91 -104.62 -0.51 -1.98 16 6 C 0.20 2.98 2.96 -69.09 -0.20 2.78 16 7 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 8 C -0.20 -3.41 7.48 37.16 0.28 -3.13 16 9 N -1.01 -16.15 2.83 -115.86 -0.33 -16.48 16 10 C 0.10 1.21 10.37 59.85 0.62 1.84 16 11 S 2.78 56.29 3.74 -107.50 -0.40 55.89 16 12 O -1.00 -21.66 16.78 -57.17 -0.96 -22.62 16 13 O -0.96 -21.78 10.34 -57.17 -0.59 -22.37 16 14 N -0.99 -20.72 3.12 -115.85 -0.36 -21.08 16 15 C 0.11 1.90 9.73 59.85 0.58 2.48 16 16 C 0.26 6.34 1.73 -69.08 -0.12 6.22 16 17 H 0.07 1.74 5.11 -51.93 -0.27 1.47 16 18 C -0.15 -3.31 8.49 37.15 0.32 -2.99 16 19 C -0.52 -14.04 8.44 -34.44 -0.29 -14.33 16 20 H 0.06 1.63 7.77 -52.49 -0.41 1.22 16 21 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.09 -1.57 8.16 -39.58 -0.32 -1.89 16 28 C -0.12 -1.79 9.70 -39.59 -0.38 -2.17 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.10 2.08 5.41 -51.93 -0.28 1.80 16 36 H 0.08 1.45 4.55 -51.93 -0.24 1.21 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.69 7.76 -51.92 -0.40 0.28 16 39 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.69 6.37 -51.92 -0.33 0.36 16 42 H 0.07 1.26 6.21 -51.93 -0.32 0.93 16 43 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 44 H 0.03 0.72 6.54 -51.93 -0.34 0.38 16 45 H 0.01 0.26 6.68 -51.93 -0.35 -0.09 16 46 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.11 2.08 3.66 -34.56 -0.13 1.95 16 48 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -31.56 373.15 -9.62 -41.17 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.05 Total: 5.20 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.16 Total: -17.72 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.06 Total: -61.29 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -1.55 Total: -44.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 56.29 SS G_CDS: -0.40 Total: 55.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.56 -9.62 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282929751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.107 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds