Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.61330 * 2 1 4 4 C 1.38633 * 119.15601 * 179.97438 * 3 2 1 5 5 C 1.38668 * 118.42152 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.41461 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47500 * 301.65801 * 6 5 4 8 8 C 1.53002 * 109.47093 * 61.66135 * 6 5 4 9 9 N 1.46506 * 109.46862 * 181.65717 * 6 5 4 10 10 S 1.65601 * 119.99714 * 156.69851 * 9 6 5 11 11 O 1.42102 * 104.27466 * 176.04866 * 10 9 6 12 12 O 1.42100 * 104.27752 * 303.90459 * 10 9 6 13 13 C 1.81398 * 104.45072 * 59.97636 * 10 9 6 14 14 C 1.53004 * 109.47000 * 174.24183 * 13 10 9 15 15 C 1.53005 * 109.47115 * 299.99989 * 14 13 10 16 16 C 1.52999 * 109.47216 * 59.99906 * 14 13 10 17 17 C 1.50694 * 109.47443 * 180.02562 * 14 13 10 18 18 H 1.08007 * 119.99715 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00498 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99739 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00189 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47148 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46975 * 120.00148 * 21 19 17 24 24 H 1.48498 * 109.47167 * 239.99967 * 21 19 17 25 25 C 1.38176 * 119.16538 * 0.27000 * 5 4 3 26 26 N 1.31852 * 119.62168 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47037 * 90.00088 * 1 2 3 28 28 H 1.09000 * 109.46928 * 210.00355 * 1 2 3 29 29 H 1.08999 * 109.47308 * 329.99593 * 1 2 3 30 30 H 1.07992 * 120.42335 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.78622 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47110 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46718 * 59.99981 * 7 6 5 34 34 H 1.08998 * 109.46849 * 299.99806 * 7 6 5 35 35 H 1.09000 * 109.47285 * 294.51552 * 8 6 5 36 36 H 1.08997 * 109.47345 * 54.51798 * 8 6 5 37 37 H 1.09001 * 109.47096 * 174.51520 * 8 6 5 38 38 H 0.96992 * 120.00146 * 336.69828 * 9 6 5 39 39 H 1.08997 * 109.47335 * 294.23701 * 13 10 9 40 40 H 1.08995 * 109.47124 * 54.24302 * 13 10 9 41 41 H 1.09000 * 109.47300 * 59.99812 * 15 14 13 42 42 H 1.09000 * 109.46845 * 180.02562 * 15 14 13 43 43 H 1.08995 * 109.47230 * 300.00016 * 15 14 13 44 44 H 1.08998 * 109.47011 * 59.99911 * 16 14 13 45 45 H 1.09001 * 109.47409 * 180.02562 * 16 14 13 46 46 H 1.09008 * 109.47185 * 300.00005 * 16 14 13 47 47 H 0.97005 * 119.99985 * 179.97438 * 20 19 17 48 48 H 1.08000 * 119.61807 * 179.69859 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2266 -0.0341 0.0005 6 6 5.7322 -0.0985 0.0005 7 6 6.2742 0.6361 -1.2273 8 6 6.2710 0.5638 1.2702 9 7 6.1610 -1.4988 -0.0395 10 16 7.6636 -1.8885 -0.6164 11 8 7.7620 -3.2921 -0.4180 12 8 7.6933 -1.3294 -1.9225 13 6 8.8112 -1.0087 0.4788 14 6 10.2487 -1.4043 0.1350 15 6 10.4210 -2.9131 0.3217 16 6 10.5459 -1.0332 -1.3192 17 6 11.2021 -0.6740 1.0453 18 1 10.8208 0.0042 1.7944 19 6 12.5610 -0.8715 0.9218 20 7 13.0252 -1.6969 0.0092 21 14 13.7428 0.0344 2.0497 22 1 12.9739 0.8976 2.9819 23 1 14.5367 -0.9499 2.8282 24 1 14.6573 0.8752 1.2360 25 6 3.4767 -1.1946 -0.0057 26 7 2.1587 -1.1462 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6507 2.1373 0.0004 31 1 4.1366 2.1141 0.0001 32 1 7.3632 0.5891 -1.2275 33 1 5.9551 1.6779 -1.1975 34 1 5.8904 0.1642 -2.1318 35 1 6.0354 1.6279 1.2530 36 1 5.8097 0.1035 2.1439 37 1 7.3519 0.4317 1.3182 38 1 5.5649 -2.1977 0.2720 39 1 8.6885 0.0661 0.3458 40 1 8.5995 -1.2731 1.5148 41 1 9.7313 -3.4418 -0.3363 42 1 11.4451 -3.1948 0.0772 43 1 10.2092 -3.1775 1.3577 44 1 10.4231 0.0417 -1.4522 45 1 11.5698 -1.3154 -1.5643 46 1 9.8562 -1.5618 -1.9774 47 1 13.9813 -1.8356 -0.0779 48 1 3.9756 -2.1525 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451394271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = -32.405081 kcal Electronic energy + Delta-G solvation = -29086.730113 eV Core-core repulsion = 25269.282441 eV Total energy + Delta-G solvation = -3817.447672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80406 -37.84781 -36.50334 -36.29386 -35.33141 -32.83185 -32.57939 -31.74205 -30.32639 -27.92380 -27.43550 -26.51404 -25.74210 -25.25225 -23.67101 -22.99132 -20.50357 -19.60913 -18.71623 -18.03394 -16.86999 -16.46854 -15.92061 -15.74934 -15.45815 -15.05481 -14.79109 -14.78364 -14.52588 -13.95509 -13.77378 -13.49358 -13.26924 -13.06051 -12.73580 -12.68561 -12.59811 -12.41910 -12.26479 -12.13861 -12.10099 -11.71433 -11.51715 -11.39526 -11.26285 -11.08145 -10.95645 -10.75476 -10.64303 -10.37071 -10.29656 -10.10992 -10.00543 -9.74553 -9.66472 -9.60992 -9.36402 -8.95482 -8.69831 -8.42735 -6.06039 -4.18132 0.82281 0.85261 1.05445 3.08783 3.22891 3.31666 3.33650 3.51776 3.96861 4.25708 4.35727 4.37980 4.46571 4.66740 4.68442 4.74920 4.88236 5.01697 5.05854 5.19564 5.24881 5.25760 5.30115 5.44511 5.50327 5.60146 5.65015 5.67726 5.74391 5.81968 5.86381 5.90015 6.06751 6.20065 6.33035 6.40223 6.48991 6.66926 6.75262 6.87632 6.98833 7.07748 7.29613 7.47729 7.65476 7.77564 7.95692 8.07405 8.30227 8.80626 9.47586 10.95269 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.003033 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.400763 B = 9229.040709 C = 9777.753567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.118 3.882 3 C -0.169 4.169 4 C -0.063 4.063 5 C -0.128 4.128 6 C 0.224 3.776 7 C -0.173 4.173 8 C -0.184 4.184 9 N -1.124 6.124 10 S 2.593 3.407 11 O -0.963 6.963 12 O -0.961 6.961 13 C -0.586 4.586 14 C 0.083 3.917 15 C -0.169 4.169 16 C -0.161 4.161 17 C -0.501 4.501 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.895 3.105 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.108 3.892 26 N -0.480 5.480 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.410 0.590 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.130 6.865 1.131 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.020 4.020 3 C -0.189 4.189 4 C -0.089 4.089 5 C -0.131 4.131 6 C 0.134 3.866 7 C -0.231 4.231 8 C -0.242 4.242 9 N -0.882 5.882 10 S 2.691 3.309 11 O -0.953 6.953 12 O -0.951 6.951 13 C -0.719 4.719 14 C 0.081 3.919 15 C -0.227 4.227 16 C -0.218 4.218 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.049 4.049 26 N -0.189 5.189 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.190 5.565 0.233 20.945 hybrid contribution 1.044 1.403 1.377 2.226 sum -19.146 6.968 1.610 20.439 Atomic orbital electron populations 1.20702 0.88885 1.03389 1.03056 1.21341 0.97082 0.88490 0.95086 1.21927 0.94660 0.99281 1.02984 1.21397 0.94257 0.97775 0.95476 1.20817 0.95942 0.94641 1.01706 1.18896 0.89786 0.81394 0.96550 1.22626 1.03261 1.00241 0.96985 1.22729 1.03569 1.01112 0.96795 1.56150 1.35358 1.12977 1.83759 1.05659 0.73528 0.75152 0.76524 1.93547 1.85057 1.29702 1.86999 1.93580 1.85523 1.79687 1.36294 1.30760 1.14089 1.12599 1.14487 1.17929 0.85317 0.94069 0.94569 1.22355 1.04672 0.96122 0.99571 1.22234 1.04538 0.99400 0.95665 1.20968 0.90386 1.25499 1.17214 0.92235 1.24938 0.98235 0.95139 0.95444 1.69812 1.13532 1.35587 1.33165 0.86492 0.80984 0.79604 0.80627 1.19835 1.20972 1.20960 1.22559 0.89040 0.98248 0.95049 1.67562 1.09601 1.29380 1.12403 0.90446 0.90499 0.90788 0.84692 0.84382 0.89997 0.91127 0.90023 0.90931 0.91486 0.89776 0.75417 0.85932 0.86050 0.94446 0.88777 0.94619 0.94320 0.88489 0.96107 0.92784 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.01 0.37 -0.34 16 2 C 0.12 1.18 6.78 -82.58 -0.56 0.62 16 3 C -0.17 -1.44 9.75 -39.44 -0.38 -1.83 16 4 C -0.06 -0.57 8.92 -39.28 -0.35 -0.93 16 5 C -0.13 -1.41 4.78 -104.49 -0.50 -1.91 16 6 C 0.22 2.64 0.98 -132.97 -0.13 2.51 16 7 C -0.17 -2.18 6.88 37.16 0.26 -1.93 16 8 C -0.18 -1.93 8.41 37.16 0.31 -1.62 16 9 N -1.12 -15.19 5.18 -0.40 0.00 -15.19 16 10 S 2.59 46.53 4.00 -107.50 -0.43 46.10 16 11 O -0.96 -20.06 15.27 -57.54 -0.88 -20.94 16 12 O -0.96 -18.94 12.58 -57.54 -0.72 -19.67 16 13 C -0.59 -10.88 3.20 37.16 0.12 -10.76 16 14 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 15 C -0.17 -4.13 7.77 37.16 0.29 -3.84 16 16 C -0.16 -3.83 7.81 37.16 0.29 -3.54 16 17 C -0.50 -12.77 8.01 -34.44 -0.28 -13.05 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.68 5.15 -17.82 -0.09 1.58 16 20 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 21 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.11 1.29 10.41 -17.55 -0.18 1.11 16 26 N -0.48 -5.87 10.27 -9.47 -0.10 -5.96 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.14 0.95 7.33 -52.48 -0.38 0.56 16 32 H 0.08 1.16 5.15 -51.93 -0.27 0.89 16 33 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 34 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 35 H 0.07 0.61 7.76 -51.93 -0.40 0.21 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.97 4.25 -51.93 -0.22 0.75 16 38 H 0.41 4.83 6.21 -34.47 -0.21 4.62 16 39 H 0.12 2.02 5.64 -51.93 -0.29 1.72 16 40 H 0.12 2.04 7.97 -51.93 -0.41 1.63 16 41 H 0.04 0.88 5.19 -51.93 -0.27 0.61 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 43 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 46 H 0.02 0.46 5.74 -51.92 -0.30 0.16 16 47 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 48 H 0.16 1.69 5.77 -52.49 -0.30 1.39 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.98 368.08 -8.98 -40.97 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.97 Total: 9.14 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: -0.92 Total: -32.02 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.42 Total: -44.39 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.60 Total: -40.61 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -0.43 Total: 46.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.98 -8.98 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451394271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.563 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds