Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.61330 * 2 1 4 4 C 1.38633 * 119.15601 * 179.97438 * 3 2 1 5 5 C 1.38668 * 118.42152 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.41461 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47500 * 301.65801 * 6 5 4 8 8 C 1.53002 * 109.47093 * 61.66135 * 6 5 4 9 9 N 1.46506 * 109.46862 * 181.65717 * 6 5 4 10 10 S 1.65601 * 119.99714 * 156.69851 * 9 6 5 11 11 O 1.42102 * 104.27466 * 176.04866 * 10 9 6 12 12 O 1.42100 * 104.27752 * 303.90459 * 10 9 6 13 13 C 1.81398 * 104.45072 * 59.97636 * 10 9 6 14 14 C 1.53004 * 109.47000 * 174.24183 * 13 10 9 15 15 C 1.53005 * 109.47115 * 299.99989 * 14 13 10 16 16 C 1.52999 * 109.47216 * 59.99906 * 14 13 10 17 17 C 1.50694 * 109.47443 * 180.02562 * 14 13 10 18 18 H 1.08007 * 119.99715 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00498 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99739 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00189 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47148 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46975 * 120.00148 * 21 19 17 24 24 H 1.48498 * 109.47167 * 239.99967 * 21 19 17 25 25 C 1.38176 * 119.16538 * 0.27000 * 5 4 3 26 26 N 1.31852 * 119.62168 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47037 * 90.00088 * 1 2 3 28 28 H 1.09000 * 109.46928 * 210.00355 * 1 2 3 29 29 H 1.08999 * 109.47308 * 329.99593 * 1 2 3 30 30 H 1.07992 * 120.42335 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.78622 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47110 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46718 * 59.99981 * 7 6 5 34 34 H 1.08998 * 109.46849 * 299.99806 * 7 6 5 35 35 H 1.09000 * 109.47285 * 294.51552 * 8 6 5 36 36 H 1.08997 * 109.47345 * 54.51798 * 8 6 5 37 37 H 1.09001 * 109.47096 * 174.51520 * 8 6 5 38 38 H 0.96992 * 120.00146 * 336.69828 * 9 6 5 39 39 H 1.08997 * 109.47335 * 294.23701 * 13 10 9 40 40 H 1.08995 * 109.47124 * 54.24302 * 13 10 9 41 41 H 1.09000 * 109.47300 * 59.99812 * 15 14 13 42 42 H 1.09000 * 109.46845 * 180.02562 * 15 14 13 43 43 H 1.08995 * 109.47230 * 300.00016 * 15 14 13 44 44 H 1.08998 * 109.47011 * 59.99911 * 16 14 13 45 45 H 1.09001 * 109.47409 * 180.02562 * 16 14 13 46 46 H 1.09008 * 109.47185 * 300.00005 * 16 14 13 47 47 H 0.97005 * 119.99985 * 179.97438 * 20 19 17 48 48 H 1.08000 * 119.61807 * 179.69859 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 0.0005 5 6 4.2266 -0.0341 0.0005 6 6 5.7322 -0.0985 0.0005 7 6 6.2742 0.6361 -1.2273 8 6 6.2710 0.5638 1.2702 9 7 6.1610 -1.4988 -0.0395 10 16 7.6636 -1.8885 -0.6164 11 8 7.7620 -3.2921 -0.4180 12 8 7.6933 -1.3294 -1.9225 13 6 8.8112 -1.0087 0.4788 14 6 10.2487 -1.4043 0.1350 15 6 10.4210 -2.9131 0.3217 16 6 10.5459 -1.0332 -1.3192 17 6 11.2021 -0.6740 1.0453 18 1 10.8208 0.0042 1.7944 19 6 12.5610 -0.8715 0.9218 20 7 13.0252 -1.6969 0.0092 21 14 13.7428 0.0344 2.0497 22 1 12.9739 0.8976 2.9819 23 1 14.5367 -0.9499 2.8282 24 1 14.6573 0.8752 1.2360 25 6 3.4767 -1.1946 -0.0057 26 7 2.1587 -1.1462 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6507 2.1373 0.0004 31 1 4.1366 2.1141 0.0001 32 1 7.3632 0.5891 -1.2275 33 1 5.9551 1.6779 -1.1975 34 1 5.8904 0.1642 -2.1318 35 1 6.0354 1.6279 1.2530 36 1 5.8097 0.1035 2.1439 37 1 7.3519 0.4317 1.3182 38 1 5.5649 -2.1977 0.2720 39 1 8.6885 0.0661 0.3458 40 1 8.5995 -1.2731 1.5148 41 1 9.7313 -3.4418 -0.3363 42 1 11.4451 -3.1948 0.0772 43 1 10.2092 -3.1775 1.3577 44 1 10.4231 0.0417 -1.4522 45 1 11.5698 -1.3154 -1.5643 46 1 9.8562 -1.5618 -1.9774 47 1 13.9813 -1.8356 -0.0779 48 1 3.9756 -2.1525 -0.0107 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451394271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = -53.219847 kcal Electronic energy + Delta-G solvation = -29087.632709 eV Core-core repulsion = 25269.282441 eV Total energy + Delta-G solvation = -3818.350268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57310 -38.85407 -38.17519 -37.86308 -36.87880 -33.69041 -33.61758 -33.26032 -31.31326 -28.89050 -28.34786 -27.81379 -27.67851 -27.22691 -24.42017 -23.76861 -21.50821 -21.25333 -20.07929 -19.22630 -18.06539 -17.80003 -17.27790 -16.93790 -16.74843 -16.58499 -16.09136 -15.62105 -15.46140 -15.05590 -14.83135 -14.65125 -14.60460 -14.42171 -14.15809 -13.88228 -13.72222 -13.44556 -13.19717 -13.14047 -13.07160 -12.96277 -12.89333 -12.82865 -12.72407 -12.51065 -12.44874 -12.40503 -12.19009 -12.09271 -11.99601 -11.65969 -11.52702 -11.31851 -10.87200 -10.64046 -10.47170 -10.40071 -10.32911 -9.71557 -8.01427 -6.19692 -0.61492 0.11268 0.34221 1.44110 1.47604 1.56634 1.82545 2.45428 2.77102 2.82912 3.20680 3.22411 3.36730 3.58111 3.77768 3.87127 3.90581 4.03100 4.08950 4.12934 4.22360 4.32901 4.51687 4.59494 4.69081 4.70894 4.80189 4.81730 4.83363 4.85450 4.89769 4.91515 4.99606 5.07025 5.11636 5.16305 5.21814 5.29440 5.37487 5.39937 5.44190 5.52510 5.67022 5.78674 5.98572 6.00372 6.13561 6.35645 6.85777 7.03142 7.48781 8.98655 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023339 B = 0.003033 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.400763 B = 9229.040709 C = 9777.753567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.102 3.898 3 C -0.162 4.162 4 C -0.062 4.062 5 C -0.135 4.135 6 C 0.223 3.777 7 C -0.178 4.178 8 C -0.186 4.186 9 N -1.113 6.113 10 S 2.610 3.390 11 O -0.996 6.996 12 O -0.981 6.981 13 C -0.586 4.586 14 C 0.073 3.927 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.512 4.512 18 H 0.067 0.933 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.953 3.047 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.284 1.284 25 C 0.085 3.915 26 N -0.510 5.510 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.170 0.830 31 H 0.167 0.833 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.260 0.740 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.079 9.674 2.369 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.036 4.036 3 C -0.182 4.182 4 C -0.088 4.088 5 C -0.139 4.139 6 C 0.134 3.866 7 C -0.236 4.236 8 C -0.244 4.244 9 N -0.874 5.874 10 S 2.708 3.292 11 O -0.987 6.987 12 O -0.971 6.971 13 C -0.718 4.718 14 C 0.070 3.930 15 C -0.225 4.225 16 C -0.215 4.215 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.183 4.183 20 N -0.548 5.548 21 Si 0.780 3.220 22 H -0.187 1.187 23 H -0.213 1.213 24 H -0.211 1.211 25 C -0.072 4.072 26 N -0.220 5.220 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.187 0.813 31 H 0.184 0.816 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.256 0.744 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.058 0.942 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.142 8.370 1.478 23.717 hybrid contribution 1.524 0.553 0.961 1.885 sum -20.618 8.922 2.439 22.598 Atomic orbital electron populations 1.20787 0.86981 1.04298 1.03787 1.21941 0.98566 0.88564 0.94502 1.22310 0.94600 1.00065 1.01200 1.21760 0.94822 0.97934 0.94300 1.20735 0.95052 0.95298 1.02776 1.19066 0.90613 0.79886 0.97044 1.22670 1.02095 1.02335 0.96533 1.22760 1.02734 1.02823 0.96053 1.55762 1.33620 1.14601 1.83448 1.04864 0.74183 0.74066 0.76088 1.93492 1.85958 1.31864 1.87364 1.93559 1.86161 1.79772 1.37626 1.30692 1.11201 1.14248 1.15688 1.17900 0.88109 0.93055 0.93886 1.22308 1.03110 0.97397 0.99691 1.22164 1.03030 0.99862 0.96444 1.21325 0.90923 1.25444 1.17421 0.91503 1.25677 0.99943 0.95947 0.96718 1.69960 1.13568 1.36780 1.34502 0.85578 0.79013 0.78453 0.79003 1.18666 1.21327 1.21062 1.22603 0.89455 0.98701 0.96424 1.67551 1.09802 1.31012 1.13609 0.89697 0.91275 0.88224 0.81286 0.81562 0.91698 0.87742 0.91907 0.88161 0.90857 0.90818 0.74365 0.83622 0.84262 0.94240 0.91276 0.94337 0.93532 0.91038 0.95747 0.93037 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.17 71.24 0.72 -0.42 16 2 C 0.10 1.82 6.78 42.55 0.29 2.11 16 3 C -0.16 -2.18 9.75 22.36 0.22 -1.96 16 4 C -0.06 -0.91 8.92 22.47 0.20 -0.71 16 5 C -0.14 -2.70 4.78 -19.78 -0.09 -2.80 16 6 C 0.22 4.82 0.98 2.86 0.00 4.82 16 7 C -0.18 -4.15 6.88 71.98 0.50 -3.65 16 8 C -0.19 -3.32 8.41 71.98 0.61 -2.72 16 9 N -1.11 -29.21 5.18 -155.17 -0.80 -30.01 16 10 S 2.61 93.17 4.00 -56.49 -0.23 92.95 16 11 O -1.00 -42.06 15.27 -127.65 -1.95 -44.01 16 12 O -0.98 -38.81 12.58 -127.65 -1.61 -40.41 16 13 C -0.59 -21.10 3.20 71.98 0.23 -20.87 16 14 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 15 C -0.17 -8.30 7.77 71.98 0.56 -7.74 16 16 C -0.16 -7.59 7.81 71.98 0.56 -7.03 16 17 C -0.51 -25.77 8.01 25.60 0.21 -25.57 16 18 H 0.07 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.02 0.85 5.15 84.65 0.44 1.29 16 20 N -0.91 -49.87 9.35 21.45 0.20 -49.67 16 21 Si 0.95 41.35 29.54 68.60 2.03 43.38 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.08 1.97 10.41 84.67 0.88 2.85 16 26 N -0.51 -12.07 10.27 -183.89 -1.89 -13.96 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.17 1.42 7.33 -2.91 -0.02 1.40 16 32 H 0.06 1.74 5.15 -2.39 -0.01 1.72 16 33 H 0.10 1.64 7.37 -2.39 -0.02 1.62 16 34 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 35 H 0.10 1.24 7.76 -2.39 -0.02 1.22 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.48 4.25 -2.39 -0.01 1.47 16 38 H 0.42 9.78 6.21 -96.75 -0.60 9.18 16 39 H 0.15 4.52 5.64 -2.39 -0.01 4.51 16 40 H 0.14 4.46 7.97 -2.39 -0.02 4.44 16 41 H 0.04 1.90 5.19 -2.39 -0.01 1.89 16 42 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 46 H 0.02 1.11 5.74 -2.38 -0.01 1.10 16 47 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 48 H 0.15 3.35 5.77 -2.91 -0.02 3.33 16 Total: -1.00 -70.15 368.08 1.42 -68.72 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.38 Total: 32.06 kcal Atomic # 6 Polarization: -64.32 SS G_CDS: 5.29 Total: -59.03 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -2.49 Total: -93.65 kcal Atomic # 8 Polarization: -80.87 SS G_CDS: -3.56 Total: -84.42 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 93.17 SS G_CDS: -0.23 Total: 92.95 kcal Total: -70.15 1.42 -68.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451394271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.502 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds