Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38281 * 119.92871 * 2 1 4 4 C 1.38115 * 120.06908 * 180.02562 * 3 2 1 5 5 C 1.38869 * 119.93127 * 359.97070 * 4 3 2 6 6 N 1.39928 * 120.07154 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99998 * 292.12942 * 6 5 4 8 8 C 1.50703 * 109.47104 * 269.99696 * 7 6 5 9 9 H 1.08003 * 119.99620 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00267 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99517 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00215 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46964 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47396 * 120.00202 * 12 10 8 15 15 H 1.48502 * 109.47193 * 240.00332 * 12 10 8 16 16 C 1.34780 * 119.99788 * 112.12717 * 6 5 4 17 17 O 1.21280 * 120.00252 * 355.26524 * 16 6 5 18 18 C 1.50700 * 119.99575 * 175.26916 * 16 6 5 19 19 C 1.53001 * 109.46932 * 179.97438 * 18 16 6 20 20 N 1.46498 * 109.47452 * 180.02562 * 19 18 16 21 21 C 1.35770 * 119.62588 * 89.99422 * 20 19 18 22 22 C 1.35350 * 120.69928 * 180.27812 * 21 20 19 23 23 C 1.40198 * 119.95031 * 359.44165 * 22 21 20 24 24 C 1.36405 * 119.26318 * 0.57319 * 23 22 21 25 25 C 1.34656 * 119.62591 * 270.02510 * 20 19 18 26 26 O 1.22068 * 119.98474 * 359.97438 * 25 20 19 27 27 C 1.38869 * 119.86034 * 0.25779 * 5 4 3 28 28 C 1.38115 * 119.92476 * 359.51266 * 27 5 4 29 29 H 1.09000 * 109.47084 * 90.00625 * 1 2 3 30 30 H 1.09001 * 109.46837 * 210.00202 * 1 2 3 31 31 H 1.09000 * 109.47500 * 330.00387 * 1 2 3 32 32 H 1.07996 * 119.96384 * 359.97178 * 3 2 1 33 33 H 1.08000 * 120.03166 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47359 * 29.99500 * 7 6 5 35 35 H 1.08999 * 109.47040 * 150.00177 * 7 6 5 36 36 H 0.97007 * 119.99672 * 179.97438 * 11 10 8 37 37 H 1.08994 * 109.47404 * 60.00088 * 18 16 6 38 38 H 1.08998 * 109.47379 * 299.99774 * 18 16 6 39 39 H 1.09001 * 109.47314 * 59.99815 * 19 18 16 40 40 H 1.08999 * 109.47173 * 299.99603 * 19 18 16 41 41 H 1.07996 * 119.64596 * 0.02562 * 21 20 19 42 42 H 1.08000 * 120.02240 * 179.70585 * 22 21 20 43 43 H 1.07994 * 120.36642 * 180.31886 * 23 22 21 44 44 H 1.07994 * 120.34595 * 179.73838 * 24 23 22 45 45 H 1.08000 * 120.03762 * 179.74570 * 27 5 4 46 46 H 1.08004 * 119.96457 * 180.22842 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6731 0.0000 -0.0015 7 6 6.4047 0.4774 -1.1776 8 6 6.6552 -0.6754 -2.1154 9 1 6.3049 -1.6648 -1.8605 10 6 7.3316 -0.4672 -3.2986 11 7 7.7586 0.7375 -3.6086 12 14 7.6415 -1.8959 -4.4614 13 1 7.0651 -3.1372 -3.8849 14 1 7.0025 -1.6151 -5.7720 15 1 9.1038 -2.0716 -4.6511 16 6 6.3478 -0.4391 1.0795 17 8 5.7453 -0.7532 2.0840 18 6 7.8509 -0.5396 1.0398 19 6 8.3629 -1.0601 2.3844 20 7 9.8241 -1.1573 2.3462 21 6 10.5777 -0.0936 2.7256 22 6 11.9293 -0.1577 2.6935 23 6 12.5644 -1.3358 2.2762 24 6 11.8057 -2.4033 1.8950 25 6 10.4047 -2.3005 1.9346 26 8 9.7137 -3.2483 1.5965 27 6 3.5781 -1.2018 -0.0053 28 6 2.1970 -1.1984 0.0001 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1327 -0.0005 33 1 4.1162 2.1381 -0.0010 34 1 5.8152 1.2392 -1.6877 35 1 7.3574 0.9044 -0.8643 36 1 8.2349 0.8840 -4.4409 37 1 8.2760 0.4452 0.8462 38 1 8.1484 -1.2260 0.2470 39 1 7.9378 -2.0449 2.5785 40 1 8.0655 -0.3734 3.1769 41 1 10.0934 0.8146 3.0525 42 1 12.5180 0.6967 2.9932 43 1 13.6424 -1.3960 2.2529 44 1 12.2767 -3.3179 1.5664 45 1 4.1164 -2.1381 -0.0094 46 1 1.6552 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726940421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = -11.982622 kcal Electronic energy + Delta-G solvation = -29092.238849 eV Core-core repulsion = 25140.232810 eV Total energy + Delta-G solvation = -3952.006039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25244 -39.93896 -38.26370 -36.76037 -35.37992 -34.88014 -32.89686 -31.71174 -30.62788 -30.57084 -29.71375 -27.54618 -26.32324 -24.82138 -23.64643 -23.18256 -22.23243 -22.14995 -20.98900 -18.83135 -17.66743 -17.24956 -16.81214 -16.64768 -16.28322 -15.85938 -15.44633 -15.24841 -15.01018 -14.59013 -14.54088 -14.20162 -14.05797 -13.94284 -13.51159 -13.07507 -12.97522 -12.86860 -12.44718 -12.35673 -12.22272 -12.10408 -11.92689 -11.76670 -11.67488 -11.42862 -11.28735 -11.02438 -10.95234 -10.79857 -10.71926 -10.23810 -10.10275 -9.84962 -9.78404 -9.33205 -8.62451 -8.52846 -8.49861 -7.91434 -7.65568 -6.24265 -4.31236 0.86803 1.68451 1.81484 1.93386 2.69001 3.14840 3.21701 3.30270 3.36765 3.67090 3.81044 4.13578 4.32251 4.56946 4.70027 4.91354 5.09965 5.10499 5.12943 5.15132 5.16642 5.24018 5.27320 5.36863 5.41972 5.55564 5.63136 5.70682 5.79156 5.88101 5.98090 6.00929 6.04963 6.10457 6.12304 6.26766 6.30195 6.41095 6.57005 6.60068 6.78396 6.91150 6.91596 7.08019 7.17834 7.21577 7.57849 7.71542 7.95334 8.08827 8.17186 8.68819 8.83932 9.37127 10.82757 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.003776 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.191747 B = 7413.353080 C = 9312.130981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.113 4.113 4 C -0.120 4.120 5 C 0.170 3.830 6 N -0.559 5.559 7 C 0.239 3.761 8 C -0.538 4.538 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.891 5.891 12 Si 0.895 3.105 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.529 3.471 17 O -0.561 6.561 18 C -0.147 4.147 19 C 0.106 3.894 20 N -0.493 5.493 21 C 0.140 3.860 22 C -0.242 4.242 23 C -0.019 4.019 24 C -0.245 4.245 25 C 0.510 3.490 26 O -0.545 6.545 27 C -0.102 4.102 28 C -0.112 4.112 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.161 0.839 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.120 0.880 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 3.047 11.137 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.105 4.105 3 C -0.132 4.132 4 C -0.140 4.140 5 C 0.079 3.921 6 N -0.286 5.286 7 C 0.121 3.879 8 C -0.576 4.576 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.318 3.682 17 O -0.441 6.441 18 C -0.188 4.188 19 C -0.015 4.015 20 N -0.202 5.202 21 C 0.012 3.988 22 C -0.265 4.265 23 C -0.041 4.041 24 C -0.267 4.267 25 C 0.312 3.688 26 O -0.427 6.427 27 C -0.121 4.121 28 C -0.131 4.131 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.149 0.851 44 H 0.163 0.837 45 H 0.138 0.862 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.436 2.368 11.276 11.530 hybrid contribution 0.522 -0.521 -1.092 1.317 sum 0.958 1.847 10.185 10.395 Atomic orbital electron populations 1.20716 0.91605 1.02222 1.01908 1.19803 0.95701 0.93236 1.01712 1.20762 0.93460 0.97283 1.01706 1.21164 0.94180 0.97377 1.01244 1.17537 0.83390 0.92875 0.98268 1.45926 1.03409 1.62223 1.17006 1.19593 0.91735 0.95691 0.80906 1.21461 1.37084 0.95164 1.03900 0.91910 1.24900 0.95022 0.95990 0.97640 1.69922 1.37908 1.20600 1.24493 0.86458 0.78170 0.82502 0.80600 1.19484 1.20743 1.20682 1.20219 0.89396 0.76238 0.82344 1.90646 1.70775 1.50627 1.32022 1.21888 0.93192 1.04653 0.99040 1.21780 0.76155 1.05388 0.98183 1.45642 1.09104 1.12860 1.52639 1.22011 0.92559 0.91132 0.93073 1.20598 0.93049 1.00531 1.12316 1.21393 1.00456 0.91842 0.90374 1.22126 0.92326 1.01909 1.10302 1.17198 0.89907 0.82030 0.79665 1.90994 1.65317 1.36427 1.49956 1.21229 0.94050 0.97725 0.99130 1.20815 0.93564 0.97338 1.01396 0.91548 0.91933 0.91943 0.86264 0.86077 0.94173 0.94085 0.92500 0.88544 0.86566 0.87496 0.88610 0.82175 0.83971 0.85092 0.83695 0.86218 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.10 -1.55 5.88 -104.59 -0.62 -2.17 16 3 C -0.11 -1.74 9.69 -39.61 -0.38 -2.13 16 4 C -0.12 -2.15 9.69 -39.39 -0.38 -2.53 16 5 C 0.17 3.47 4.74 -83.69 -0.40 3.07 16 6 N -0.56 -11.90 2.51 -114.74 -0.29 -12.19 16 7 C 0.24 5.62 4.88 -5.19 -0.03 5.60 16 8 C -0.54 -14.12 9.16 -34.44 -0.32 -14.44 16 9 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -24.46 13.29 55.43 0.74 -23.72 16 12 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.53 10.76 7.53 -10.98 -0.08 10.68 16 17 O -0.56 -12.16 15.75 5.56 0.09 -12.07 16 18 C -0.15 -2.62 4.69 -27.88 -0.13 -2.75 16 19 C 0.11 1.62 4.62 -4.04 -0.02 1.60 16 20 N -0.49 -6.98 2.58 -119.77 -0.31 -7.29 16 21 C 0.14 1.44 10.28 -16.84 -0.17 1.27 16 22 C -0.24 -2.20 10.01 -39.88 -0.40 -2.60 16 23 C -0.02 -0.19 10.10 -39.51 -0.40 -0.59 16 24 C -0.24 -3.27 9.99 -39.38 -0.39 -3.66 16 25 C 0.51 8.56 7.41 -15.45 -0.11 8.45 16 26 O -0.55 -11.50 16.64 4.86 0.08 -11.42 16 27 C -0.10 -1.98 9.56 -39.39 -0.38 -2.35 16 28 C -0.11 -1.83 9.69 -39.61 -0.38 -2.22 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.04 1.00 7.86 -51.93 -0.41 0.59 16 35 H 0.04 0.96 6.47 -51.93 -0.34 0.63 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.10 1.56 7.26 -51.93 -0.38 1.18 16 38 H 0.12 2.42 7.91 -51.93 -0.41 2.01 16 39 H 0.11 1.87 7.35 -51.93 -0.38 1.49 16 40 H 0.10 1.22 7.97 -51.93 -0.41 0.81 16 41 H 0.16 1.11 8.04 -52.49 -0.42 0.69 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 46 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -33.22 394.70 -9.61 -42.83 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.52 Total: 5.59 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.33 Total: -3.87 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.14 Total: -43.19 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.17 Total: -23.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.22 -9.61 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.848 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds