Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31885 * 119.61583 * 2 1 4 4 C 1.31861 * 121.72221 * 180.31140 * 3 2 1 5 5 C 1.38221 * 120.76526 * 359.71377 * 4 3 2 6 6 C 1.38623 * 119.16262 * 359.97438 * 5 4 3 7 7 C 1.38179 * 119.61837 * 179.74384 * 2 1 3 8 8 C 1.50702 * 120.41755 * 359.96782 * 7 2 1 9 9 C 1.53000 * 109.47251 * 84.73008 * 8 7 2 10 10 N 1.46496 * 109.47565 * 179.97438 * 9 8 7 11 11 C 1.34770 * 120.00180 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99866 * 180.02562 * 11 10 9 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 11 10 15 15 C 1.38303 * 119.92897 * 269.72884 * 14 13 11 16 16 C 1.38101 * 120.06592 * 179.72065 * 15 14 13 17 17 C 1.38872 * 119.92893 * 0.57375 * 16 15 14 18 18 O 1.35752 * 120.06769 * 179.67803 * 17 16 15 19 19 C 1.34835 * 117.00188 * 174.48187 * 18 17 16 20 20 H 1.08004 * 119.99711 * 5.06169 * 19 18 17 21 21 C 1.38654 * 120.00249 * 185.06037 * 19 18 17 22 22 N 1.31559 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99896 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47103 * 59.99898 * 23 21 19 25 25 H 1.48506 * 109.46874 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47202 * 299.99225 * 23 21 19 27 27 C 1.38877 * 119.86621 * 359.69745 * 17 16 15 28 28 C 1.38102 * 119.92887 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47040 * 270.25901 * 1 2 3 30 30 H 1.08995 * 109.47498 * 30.26248 * 1 2 3 31 31 H 1.09000 * 109.47302 * 150.26344 * 1 2 3 32 32 H 1.07997 * 119.61392 * 179.73219 * 4 3 2 33 33 H 1.07995 * 120.42157 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.79735 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47203 * 324.72699 * 8 7 2 36 36 H 1.09005 * 109.46931 * 204.72855 * 8 7 2 37 37 H 1.09008 * 109.46807 * 59.99456 * 9 8 7 38 38 H 1.09002 * 109.46812 * 300.00517 * 9 8 7 39 39 H 0.96999 * 119.99693 * 0.02562 * 10 9 8 40 40 H 1.08996 * 109.47291 * 299.99460 * 13 11 10 41 41 H 1.08998 * 109.47203 * 59.99750 * 13 11 10 42 42 H 1.08003 * 119.96427 * 359.97438 * 15 14 13 43 43 H 1.07996 * 120.03647 * 180.26452 * 16 15 14 44 44 H 0.96998 * 119.99848 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03917 * 179.97438 * 27 17 16 46 46 H 1.08002 * 119.96608 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2267 0.0341 -0.0068 6 6 3.5766 -1.1902 -0.0005 7 6 2.1899 -1.2012 0.0054 8 6 1.4372 -2.5068 0.0119 9 6 1.0670 -2.8893 -1.4225 10 7 0.3358 -4.1587 -1.4162 11 6 -0.0945 -4.6943 -2.5757 12 8 0.1231 -4.1250 -3.6243 13 6 -0.8472 -5.9999 -2.5691 14 6 -1.2128 -6.3761 -3.9819 15 6 -2.4166 -5.9565 -4.5181 16 6 -2.7520 -6.2947 -5.8144 17 6 -1.8843 -7.0669 -6.5755 18 8 -2.2141 -7.4065 -7.8479 19 6 -1.2801 -8.0590 -8.5690 20 1 -0.3527 -8.3605 -8.1047 21 6 -1.5101 -8.3427 -9.9065 22 7 -2.6399 -7.9758 -10.4719 23 14 -0.2163 -9.2472 -10.9053 24 1 0.0398 -10.5767 -10.2954 25 1 -0.7018 -9.4269 -12.2972 26 1 1.0412 -8.4575 -10.9174 27 6 -0.6788 -7.4915 -6.0323 28 6 -0.3466 -7.1451 -4.7374 29 1 -0.3633 0.0046 1.0277 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5097 32 1 3.9752 2.1529 -0.0103 33 1 5.3056 0.0803 -0.0122 34 1 4.1367 -2.1136 -0.0013 35 1 0.5292 -2.3997 0.6053 36 1 2.0647 -3.2857 0.4453 37 1 1.9751 -2.9963 -2.0158 38 1 0.4397 -2.1103 -1.8558 39 1 0.1608 -4.6135 -0.5775 40 1 -0.2196 -6.7789 -2.1363 41 1 -1.7550 -5.8929 -1.9754 42 1 -3.0932 -5.3602 -3.9239 43 1 -3.6902 -5.9632 -6.2341 44 1 -2.8007 -8.1740 -11.4077 45 1 -0.0021 -8.0925 -6.6216 46 1 0.5906 -7.4753 -4.3142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890833892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -14.633580 kcal Electronic energy + Delta-G solvation = -27174.911954 eV Core-core repulsion = 23222.790961 eV Total energy + Delta-G solvation = -3952.120993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83176 -39.75669 -38.75587 -36.61566 -35.87629 -33.62742 -33.36615 -32.42851 -31.40344 -30.10785 -29.55910 -27.95190 -26.58220 -25.16250 -24.09539 -22.75311 -21.92690 -21.75339 -21.09638 -20.00979 -17.93379 -17.30690 -17.03628 -16.91309 -16.70231 -16.29047 -15.61456 -15.17434 -14.81192 -14.70025 -14.53339 -14.22633 -13.98764 -13.70361 -13.57171 -13.46449 -13.43823 -13.30041 -12.88997 -12.65796 -12.59487 -12.50517 -12.35986 -12.12714 -11.79499 -11.61241 -11.42996 -11.21934 -10.80895 -10.71619 -10.59958 -10.40244 -10.14809 -9.85566 -9.69305 -9.28452 -9.19182 -9.16738 -8.77445 -8.10233 -7.11635 -6.40270 -3.98863 0.66717 0.87421 2.29458 2.30776 2.78544 3.11153 3.15971 3.19150 3.20303 3.38329 3.93335 4.00819 4.27128 4.32773 4.47666 4.55528 4.56091 4.64696 4.84651 5.00053 5.03930 5.12837 5.13991 5.16184 5.23493 5.28479 5.31991 5.35386 5.37025 5.50962 5.61222 5.69068 5.74792 5.77051 5.79967 5.87725 5.89487 6.26335 6.28491 6.33308 6.46606 6.75120 6.96299 7.09914 7.28365 7.41473 7.44044 7.50092 7.61177 7.88938 8.04947 8.32974 9.05311 9.76139 10.77827 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.001737 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.007093 B =16113.751050 C =16645.323459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.135 3.865 3 N -0.485 5.485 4 C 0.100 3.900 5 C -0.178 4.178 6 C -0.067 4.067 7 C -0.133 4.133 8 C -0.087 4.087 9 C 0.123 3.877 10 N -0.742 5.742 11 C 0.508 3.492 12 O -0.518 6.518 13 C -0.079 4.079 14 C -0.171 4.171 15 C -0.060 4.060 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.233 4.233 28 C -0.057 4.057 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 11.123 26.195 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.002 4.002 3 N -0.194 5.194 4 C -0.057 4.057 5 C -0.198 4.198 6 C -0.092 4.092 7 C -0.136 4.136 8 C -0.126 4.126 9 C 0.000 4.000 10 N -0.397 5.397 11 C 0.294 3.706 12 O -0.392 6.392 13 C -0.119 4.119 14 C -0.172 4.172 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.252 4.252 28 C -0.075 4.075 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.173 0.827 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.634 12.340 25.010 29.506 hybrid contribution 1.394 -1.342 -0.073 1.936 sum 11.028 10.997 24.937 29.401 Atomic orbital electron populations 1.20850 0.88791 1.04098 1.03202 1.21206 0.97072 0.87745 0.94209 1.67553 1.10127 1.29201 1.12532 1.22768 0.89444 0.98586 0.94874 1.22135 1.01587 0.93414 1.02685 1.21536 0.93680 0.98688 0.95345 1.20479 0.94363 0.95739 1.03001 1.20732 1.00673 0.94002 0.97160 1.21256 0.97003 0.86199 0.95579 1.46081 1.59586 1.24412 1.09613 1.21093 0.79086 0.87255 0.83127 1.90763 1.55186 1.62169 1.31044 1.20404 1.00300 0.94002 0.97181 1.18633 0.97148 1.06572 0.94840 1.20401 0.95534 0.97654 0.94222 1.20155 1.01297 1.04967 0.94650 1.19380 0.92371 0.91720 0.86260 1.83977 1.40158 1.65422 1.18619 1.21277 0.98269 1.34981 0.92199 0.89156 1.25284 0.97727 0.97658 0.95889 1.70033 1.23189 1.43757 1.12880 0.85787 0.79625 0.79455 0.78590 1.19539 1.20301 1.19519 1.21104 0.99369 1.08154 0.96570 1.20504 0.97071 0.96340 0.93605 0.90235 0.90201 0.90170 0.82714 0.84693 0.84698 0.89656 0.90000 0.91515 0.91287 0.76810 0.89024 0.88947 0.87379 0.86546 0.92024 0.85611 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.39 36.00 0.34 -0.45 16 2 C 0.14 1.21 6.78 -82.59 -0.56 0.65 16 3 N -0.48 -4.88 10.27 -9.48 -0.10 -4.98 16 4 C 0.10 0.79 11.18 -17.55 -0.20 0.59 16 5 C -0.18 -1.18 10.11 -39.45 -0.40 -1.58 16 6 C -0.07 -0.46 9.84 -39.28 -0.39 -0.84 16 7 C -0.13 -1.01 5.15 -104.48 -0.54 -1.55 16 8 C -0.09 -0.50 4.77 -27.88 -0.13 -0.63 16 9 C 0.12 1.08 5.46 -4.04 -0.02 1.06 16 10 N -0.74 -6.52 5.56 -60.29 -0.33 -6.86 16 11 C 0.51 6.79 7.82 -10.99 -0.09 6.70 16 12 O -0.52 -9.81 16.03 5.55 0.09 -9.72 16 13 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 14 C -0.17 -2.98 4.38 -104.57 -0.46 -3.44 16 15 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 16 C -0.19 -4.24 9.99 -39.40 -0.39 -4.63 16 17 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 18 O -0.18 -5.25 9.76 0.03 0.00 -5.25 16 19 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 20 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.83 13.67 55.48 0.76 -25.08 16 23 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 28 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.52 5.40 -51.93 -0.28 0.24 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.08 0.38 7.02 -51.93 -0.36 0.02 16 36 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.07 0.71 6.88 -51.93 -0.36 0.36 16 39 H 0.40 2.06 8.47 -40.82 -0.35 1.72 16 40 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 43 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 46 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -36.91 390.98 -9.03 -45.94 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.12 Total: 4.22 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -4.20 Total: -20.13 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.33 Total: -36.91 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.91 -9.03 -45.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890833892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds