Wall clock time and date at job start Sat Apr 11 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31885 * 119.61583 * 2 1 4 4 C 1.31861 * 121.72221 * 180.31140 * 3 2 1 5 5 C 1.38221 * 120.76526 * 359.71377 * 4 3 2 6 6 C 1.38623 * 119.16262 * 359.97438 * 5 4 3 7 7 C 1.38179 * 119.61837 * 179.74384 * 2 1 3 8 8 C 1.50702 * 120.41755 * 359.96782 * 7 2 1 9 9 C 1.53000 * 109.47251 * 84.73008 * 8 7 2 10 10 N 1.46496 * 109.47565 * 179.97438 * 9 8 7 11 11 C 1.34770 * 120.00180 * 179.97438 * 10 9 8 12 12 O 1.21286 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99866 * 180.02562 * 11 10 9 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 11 10 15 15 C 1.38303 * 119.92897 * 269.72884 * 14 13 11 16 16 C 1.38101 * 120.06592 * 179.72065 * 15 14 13 17 17 C 1.38872 * 119.92893 * 0.57375 * 16 15 14 18 18 O 1.35752 * 120.06769 * 179.67803 * 17 16 15 19 19 C 1.34835 * 117.00188 * 174.48187 * 18 17 16 20 20 H 1.08004 * 119.99711 * 5.06169 * 19 18 17 21 21 C 1.38654 * 120.00249 * 185.06037 * 19 18 17 22 22 N 1.31559 * 119.99726 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99896 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47103 * 59.99898 * 23 21 19 25 25 H 1.48506 * 109.46874 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47202 * 299.99225 * 23 21 19 27 27 C 1.38877 * 119.86621 * 359.69745 * 17 16 15 28 28 C 1.38102 * 119.92887 * 0.02562 * 27 17 16 29 29 H 1.09000 * 109.47040 * 270.25901 * 1 2 3 30 30 H 1.08995 * 109.47498 * 30.26248 * 1 2 3 31 31 H 1.09000 * 109.47302 * 150.26344 * 1 2 3 32 32 H 1.07997 * 119.61392 * 179.73219 * 4 3 2 33 33 H 1.07995 * 120.42157 * 179.97438 * 5 4 3 34 34 H 1.07997 * 120.79735 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47203 * 324.72699 * 8 7 2 36 36 H 1.09005 * 109.46931 * 204.72855 * 8 7 2 37 37 H 1.09008 * 109.46807 * 59.99456 * 9 8 7 38 38 H 1.09002 * 109.46812 * 300.00517 * 9 8 7 39 39 H 0.96999 * 119.99693 * 0.02562 * 10 9 8 40 40 H 1.08996 * 109.47291 * 299.99460 * 13 11 10 41 41 H 1.08998 * 109.47203 * 59.99750 * 13 11 10 42 42 H 1.08003 * 119.96427 * 359.97438 * 15 14 13 43 43 H 1.07996 * 120.03647 * 180.26452 * 16 15 14 44 44 H 0.96998 * 119.99848 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03917 * 179.97438 * 27 17 16 46 46 H 1.08002 * 119.96608 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1950 -0.0061 5 6 4.2267 0.0341 -0.0068 6 6 3.5766 -1.1902 -0.0005 7 6 2.1899 -1.2012 0.0054 8 6 1.4372 -2.5068 0.0119 9 6 1.0670 -2.8893 -1.4225 10 7 0.3358 -4.1587 -1.4162 11 6 -0.0945 -4.6943 -2.5757 12 8 0.1231 -4.1250 -3.6243 13 6 -0.8472 -5.9999 -2.5691 14 6 -1.2128 -6.3761 -3.9819 15 6 -2.4166 -5.9565 -4.5181 16 6 -2.7520 -6.2947 -5.8144 17 6 -1.8843 -7.0669 -6.5755 18 8 -2.2141 -7.4065 -7.8479 19 6 -1.2801 -8.0590 -8.5690 20 1 -0.3527 -8.3605 -8.1047 21 6 -1.5101 -8.3427 -9.9065 22 7 -2.6399 -7.9758 -10.4719 23 14 -0.2163 -9.2472 -10.9053 24 1 0.0398 -10.5767 -10.2954 25 1 -0.7018 -9.4269 -12.2972 26 1 1.0412 -8.4575 -10.9174 27 6 -0.6788 -7.4915 -6.0323 28 6 -0.3466 -7.1451 -4.7374 29 1 -0.3633 0.0046 1.0277 30 1 -0.3634 0.8876 -0.5179 31 1 -0.3634 -0.8923 -0.5097 32 1 3.9752 2.1529 -0.0103 33 1 5.3056 0.0803 -0.0122 34 1 4.1367 -2.1136 -0.0013 35 1 0.5292 -2.3997 0.6053 36 1 2.0647 -3.2857 0.4453 37 1 1.9751 -2.9963 -2.0158 38 1 0.4397 -2.1103 -1.8558 39 1 0.1608 -4.6135 -0.5775 40 1 -0.2196 -6.7789 -2.1363 41 1 -1.7550 -5.8929 -1.9754 42 1 -3.0932 -5.3602 -3.9239 43 1 -3.6902 -5.9632 -6.2341 44 1 -2.8007 -8.1740 -11.4077 45 1 -0.0021 -8.0925 -6.6216 46 1 0.5906 -7.4753 -4.3142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890833892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:34 Heat of formation + Delta-G solvation = -39.936974 kcal Electronic energy + Delta-G solvation = -27176.009191 eV Core-core repulsion = 23222.790961 eV Total energy + Delta-G solvation = -3953.218231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40145 -41.00724 -40.31892 -38.24424 -36.73698 -34.42993 -34.33704 -33.90062 -32.81747 -31.76298 -30.31918 -28.62943 -27.96137 -26.95003 -24.87056 -23.62318 -23.31901 -22.50366 -22.30640 -21.17969 -19.83430 -18.84853 -17.97396 -17.76250 -17.32801 -17.16717 -16.67570 -16.36473 -16.11919 -15.95512 -15.55577 -15.50509 -15.36467 -15.13686 -14.82279 -14.56364 -14.38713 -14.13216 -14.02185 -13.94036 -13.59411 -13.40547 -13.16062 -12.95585 -12.93581 -12.84048 -12.59497 -12.44821 -12.29948 -12.21785 -12.14350 -12.09261 -11.17223 -10.93497 -10.75367 -10.66810 -10.38135 -10.04132 -9.74847 -9.72941 -8.88460 -8.46951 -6.15209 0.12510 0.34129 0.62914 0.69281 1.33372 1.44781 1.50263 1.77714 2.17743 2.27850 2.80350 2.87001 3.18748 3.42933 3.53944 3.77113 3.86374 3.90040 3.97580 4.04918 4.07475 4.09576 4.20354 4.31149 4.31966 4.50968 4.53385 4.61534 4.63094 4.66487 4.73510 4.75880 4.80221 4.82839 4.95287 5.02613 5.11267 5.15251 5.21279 5.25904 5.32429 5.36560 5.51129 5.58204 5.72889 5.79779 5.81228 6.03257 6.25343 6.69061 6.97361 7.05469 7.42164 7.79146 8.76322 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.001737 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.007093 B =16113.751050 C =16645.323459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.112 3.888 3 N -0.520 5.520 4 C 0.083 3.917 5 C -0.179 4.179 6 C -0.074 4.074 7 C -0.141 4.141 8 C -0.074 4.074 9 C 0.126 3.874 10 N -0.716 5.716 11 C 0.509 3.491 12 O -0.585 6.585 13 C -0.077 4.077 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.208 4.208 17 C 0.110 3.890 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.260 1.260 27 C -0.246 4.246 28 C -0.061 4.061 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.421 0.579 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.111 0.889 44 H 0.273 0.727 45 H 0.117 0.883 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 10.420 30.285 34.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.025 4.025 3 N -0.230 5.230 4 C -0.074 4.074 5 C -0.199 4.199 6 C -0.100 4.100 7 C -0.143 4.143 8 C -0.112 4.112 9 C 0.002 3.998 10 N -0.370 5.370 11 C 0.296 3.704 12 O -0.464 6.464 13 C -0.116 4.116 14 C -0.147 4.147 15 C -0.076 4.076 16 C -0.227 4.227 17 C 0.060 3.940 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.179 1.179 25 H -0.195 1.195 26 H -0.185 1.185 27 C -0.265 4.265 28 C -0.079 4.079 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.259 0.741 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.743 11.640 29.235 33.587 hybrid contribution 0.790 -0.934 -0.938 1.542 sum 12.533 10.706 28.296 32.747 Atomic orbital electron populations 1.20861 0.88111 1.03734 1.03975 1.21544 0.97884 0.88201 0.94892 1.67531 1.11361 1.30265 1.13847 1.23176 0.89156 1.00087 0.94955 1.22451 1.02878 0.92980 1.01569 1.21922 0.93742 0.99724 0.94584 1.20677 0.94913 0.95963 1.02780 1.20672 1.01735 0.93636 0.95145 1.21201 0.95736 0.85509 0.97355 1.45799 1.57757 1.24002 1.09455 1.21233 0.78660 0.87286 0.83186 1.90772 1.58044 1.64015 1.33532 1.20544 1.02896 0.94362 0.93790 1.19306 0.95334 1.02736 0.97280 1.20903 0.96828 0.97015 0.92889 1.20454 1.00993 1.05007 0.96260 1.19949 0.94503 0.93836 0.85692 1.83936 1.41513 1.67961 1.20731 1.21781 0.98819 1.35435 0.93033 0.88283 1.26628 1.00305 0.98533 0.96777 1.70186 1.25890 1.46506 1.13404 0.84639 0.76373 0.78425 0.76697 1.17852 1.19459 1.18470 1.21241 0.98476 1.08424 0.98334 1.20955 0.98728 0.96041 0.92191 0.88832 0.91472 0.89581 0.81090 0.82223 0.82449 0.87873 0.87631 0.93359 0.93165 0.74064 0.85094 0.84839 0.83447 0.87098 0.91852 0.86540 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.39 71.24 0.67 -0.77 16 2 C 0.11 1.89 6.78 42.54 0.29 2.18 16 3 N -0.52 -10.34 10.27 -183.89 -1.89 -12.23 16 4 C 0.08 1.24 11.18 84.68 0.95 2.19 16 5 C -0.18 -2.04 10.11 22.36 0.23 -1.81 16 6 C -0.07 -0.83 9.84 22.47 0.22 -0.61 16 7 C -0.14 -1.82 5.15 -19.77 -0.10 -1.92 16 8 C -0.07 -0.57 4.77 29.85 0.14 -0.43 16 9 C 0.13 1.86 5.46 86.38 0.47 2.34 16 10 N -0.72 -9.31 5.56 -463.06 -2.57 -11.88 16 11 C 0.51 11.52 7.82 87.66 0.69 12.20 16 12 O -0.58 -21.03 16.03 -3.05 -0.05 -21.08 16 13 C -0.08 -1.40 5.83 29.10 0.17 -1.23 16 14 C -0.15 -4.57 4.38 -19.83 -0.09 -4.66 16 15 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 16 C -0.21 -9.46 9.99 22.39 0.22 -9.24 16 17 C 0.11 5.84 6.65 22.57 0.15 5.99 16 18 O -0.23 -14.85 9.76 -22.81 -0.22 -15.07 16 19 C -0.41 -25.24 9.49 67.92 0.64 -24.59 16 20 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 21 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 22 N -0.92 -58.40 13.67 21.61 0.30 -58.11 16 23 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 24 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 28 C -0.06 -2.21 9.69 22.25 0.22 -1.99 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.97 5.40 -2.39 -0.01 0.96 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 35 H 0.10 0.47 7.02 -2.39 -0.02 0.45 16 36 H 0.11 0.37 8.06 -2.38 -0.02 0.35 16 37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.05 0.96 6.88 -2.39 -0.02 0.95 16 39 H 0.42 1.77 8.47 -92.71 -0.79 0.98 16 40 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 41 H 0.13 1.49 8.08 -2.39 -0.02 1.47 16 42 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 46 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -90.21 390.98 3.57 -86.63 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.23 Total: 21.75 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 5.75 Total: -36.40 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -4.17 Total: -82.22 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.27 Total: -36.15 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -90.21 3.57 -86.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890833892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.697 kcal (2) G-P(sol) polarization free energy of solvation -90.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds