Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31888 * 119.62071 * 2 1 4 4 C 1.31849 * 121.72550 * 180.30590 * 3 2 1 5 5 C 1.38229 * 120.76494 * 359.71342 * 4 3 2 6 6 C 1.38624 * 119.16056 * 359.97438 * 5 4 3 7 7 C 1.38185 * 119.61688 * 179.73085 * 2 1 3 8 8 C 1.50704 * 120.41789 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47144 * 84.72019 * 8 7 2 10 10 N 1.46500 * 109.47128 * 179.97438 * 9 8 7 11 11 C 1.34774 * 120.00119 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00304 * 0.02562 * 11 10 9 13 13 C 1.50704 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.50699 * 109.47208 * 180.02562 * 13 11 10 15 15 C 1.38328 * 119.96230 * 269.97915 * 14 13 11 16 16 C 1.38281 * 120.13505 * 180.02562 * 15 14 13 17 17 C 1.38120 * 120.06679 * 359.68445 * 16 15 14 18 18 C 1.38852 * 119.93490 * 0.58817 * 17 16 15 19 19 O 1.35752 * 120.07221 * 179.70368 * 18 17 16 20 20 C 1.34829 * 116.99954 * 354.17311 * 19 18 17 21 21 H 1.07998 * 119.99999 * 5.03596 * 20 19 18 22 22 C 1.38656 * 119.99670 * 185.03445 * 20 19 18 23 23 N 1.31550 * 120.00275 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47010 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46908 * 119.99967 * 24 22 20 27 27 H 1.48504 * 109.47373 * 240.00300 * 24 22 20 28 28 C 1.38073 * 119.96534 * 89.99715 * 14 13 11 29 29 H 1.08997 * 109.47411 * 270.26740 * 1 2 3 30 30 H 1.09003 * 109.47044 * 30.26834 * 1 2 3 31 31 H 1.09002 * 109.47174 * 150.26666 * 1 2 3 32 32 H 1.08000 * 119.61705 * 179.72742 * 4 3 2 33 33 H 1.07999 * 120.41633 * 179.97438 * 5 4 3 34 34 H 1.08000 * 120.78983 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.46571 * 324.72255 * 8 7 2 36 36 H 1.08998 * 109.47190 * 204.72703 * 8 7 2 37 37 H 1.09008 * 109.46644 * 60.00215 * 9 8 7 38 38 H 1.08998 * 109.47635 * 300.00411 * 9 8 7 39 39 H 0.97001 * 119.99420 * 0.02562 * 10 9 8 40 40 H 1.09002 * 109.46571 * 59.99894 * 13 11 10 41 41 H 1.08992 * 109.46782 * 300.00158 * 13 11 10 42 42 H 1.08001 * 119.93314 * 0.02562 * 15 14 13 43 43 H 1.07993 * 119.96315 * 179.97438 * 16 15 14 44 44 H 1.08006 * 120.03715 * 180.31908 * 17 16 15 45 45 H 0.96999 * 119.99936 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.03547 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1465 0.0000 4 6 3.4764 1.1950 -0.0060 5 6 4.2267 0.0340 -0.0066 6 6 3.5765 -1.1903 -0.0003 7 6 2.1899 -1.2013 0.0056 8 6 1.4372 -2.5069 0.0124 9 6 1.0669 -2.8895 -1.4220 10 7 0.3357 -4.1589 -1.4155 11 6 -0.0939 -4.6951 -2.5750 12 8 0.1253 -4.1270 -3.6238 13 6 -0.8465 -6.0007 -2.5683 14 6 -1.2101 -6.3783 -3.9812 15 6 -2.4108 -5.9551 -4.5222 16 6 -2.7482 -6.2999 -5.8181 17 6 -1.8837 -7.0628 -6.5786 18 6 -0.6802 -7.4939 -6.0365 19 8 0.1688 -8.2489 -6.7794 20 6 -0.2670 -8.6467 -7.9917 21 1 -1.2178 -8.2964 -8.3654 22 6 0.5055 -9.5055 -8.7587 23 7 1.6635 -9.9325 -8.3033 24 14 -0.0987 -10.0572 -10.4379 25 1 -1.4207 -9.4404 -10.7156 26 1 0.8731 -9.6330 -11.4776 27 1 -0.2286 -11.5365 -10.4559 28 6 -0.3445 -7.1465 -4.7342 29 1 -0.3634 0.0048 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 3.9753 2.1528 -0.0102 33 1 5.3056 0.0802 -0.0119 34 1 4.1367 -2.1137 -0.0010 35 1 0.5291 -2.3996 0.6057 36 1 2.0645 -3.2857 0.4458 37 1 1.9750 -2.9967 -2.0153 38 1 0.4396 -2.1106 -1.8554 39 1 0.1607 -4.6135 -0.5766 40 1 -1.7548 -5.8933 -1.9753 41 1 -0.2193 -6.7794 -2.1344 42 1 -3.0861 -5.3542 -3.9312 43 1 -3.6865 -5.9684 -6.2375 44 1 -2.1454 -7.3275 -7.5925 45 1 2.2037 -10.5336 -8.8397 46 1 0.5925 -7.4771 -4.3110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890834163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -14.455360 kcal Electronic energy + Delta-G solvation = -27300.790888 eV Core-core repulsion = 23348.677623 eV Total energy + Delta-G solvation = -3952.113265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80408 -39.77160 -38.74272 -36.57668 -35.86966 -33.61305 -33.33830 -32.35608 -31.95078 -29.73545 -29.08731 -27.97449 -26.89310 -25.22692 -24.18927 -22.73449 -21.74442 -21.62731 -21.18133 -20.13882 -17.65145 -17.27798 -17.03722 -16.90098 -16.67503 -16.14265 -15.64569 -15.08410 -15.00546 -14.77374 -14.61577 -14.33107 -13.98776 -13.73496 -13.55199 -13.43106 -13.33952 -13.33067 -12.87096 -12.58915 -12.56215 -12.40555 -12.30275 -12.10336 -11.80496 -11.58542 -11.42945 -11.23941 -10.80337 -10.72622 -10.56834 -10.39415 -10.11643 -9.84205 -9.70523 -9.28337 -9.16825 -9.14718 -8.79328 -8.01107 -7.16227 -6.39579 -3.98341 0.69551 0.90621 2.14278 2.44713 2.78539 3.11731 3.16911 3.17724 3.22615 3.40844 3.95635 4.00951 4.30102 4.36058 4.50519 4.57304 4.59131 4.66655 4.88018 4.93723 5.05332 5.14017 5.15630 5.16748 5.19665 5.24792 5.29280 5.35053 5.51665 5.54797 5.63123 5.70667 5.77629 5.79948 5.82637 5.90976 5.98560 6.23165 6.30432 6.35595 6.39296 6.71365 6.97298 7.12954 7.31970 7.41715 7.44447 7.49756 7.63610 7.88605 8.05880 8.32294 9.06450 9.77870 10.78886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.001823 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.826571 B =15351.421717 C =16151.117177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.135 3.865 3 N -0.485 5.485 4 C 0.100 3.900 5 C -0.178 4.178 6 C -0.066 4.066 7 C -0.133 4.133 8 C -0.088 4.088 9 C 0.124 3.876 10 N -0.741 5.741 11 C 0.513 3.487 12 O -0.517 6.517 13 C -0.093 4.093 14 C -0.034 4.034 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.230 4.230 18 C 0.154 3.846 19 O -0.180 6.180 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.037 3.963 23 N -0.865 5.865 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.268 0.732 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.441 15.705 21.267 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.003 4.003 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.198 4.198 6 C -0.092 4.092 7 C -0.135 4.135 8 C -0.126 4.126 9 C 0.000 4.000 10 N -0.395 5.395 11 C 0.299 3.701 12 O -0.390 6.390 13 C -0.133 4.133 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.101 3.899 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.194 4.194 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.173 0.827 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.078 0.922 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.335 16.673 20.423 26.367 hybrid contribution 0.333 -1.165 -0.476 1.301 sum -0.003 15.508 19.947 25.267 Atomic orbital electron populations 1.20844 0.88830 1.04041 1.03178 1.21198 0.97044 0.87754 0.94313 1.67542 1.10135 1.29199 1.12584 1.22761 0.89439 0.98579 0.94924 1.22143 1.01613 0.93405 1.02612 1.21551 0.93692 0.98739 0.95218 1.20477 0.94373 0.95721 1.02976 1.20733 1.00687 0.94051 0.97121 1.21266 0.97063 0.86026 0.95660 1.46023 1.59540 1.24453 1.09513 1.20792 0.79132 0.86895 0.83256 1.90774 1.55158 1.62155 1.30937 1.20587 1.00926 0.94799 0.96984 1.18659 0.94465 0.97191 0.93122 1.20349 0.97946 1.06592 0.96633 1.20679 0.98049 0.96768 0.93849 1.21176 0.96497 1.05769 1.01527 1.19282 0.89211 0.90725 0.90691 1.83976 1.37631 1.58733 1.28073 1.21367 1.06008 1.28079 0.91141 0.89073 1.25277 0.95527 0.96026 0.99794 1.70049 1.10881 1.31474 1.37611 0.85653 0.78806 0.78624 0.80364 1.19122 1.20206 1.20193 1.19945 1.00849 1.05665 0.92918 0.90258 0.90249 0.90185 0.82725 0.84670 0.84628 0.89664 0.89914 0.91370 0.91273 0.76719 0.88356 0.88239 0.87938 0.87485 0.85626 0.92180 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.39 36.01 0.34 -0.46 16 2 C 0.13 1.23 6.78 -82.59 -0.56 0.67 16 3 N -0.49 -4.98 10.27 -9.47 -0.10 -5.08 16 4 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 5 C -0.18 -1.25 10.11 -39.44 -0.40 -1.65 16 6 C -0.07 -0.49 9.84 -39.28 -0.39 -0.87 16 7 C -0.13 -1.05 5.15 -104.48 -0.54 -1.59 16 8 C -0.09 -0.54 4.77 -27.88 -0.13 -0.67 16 9 C 0.12 1.14 5.46 -4.04 -0.02 1.12 16 10 N -0.74 -6.92 5.56 -60.29 -0.33 -7.26 16 11 C 0.51 7.21 7.82 -10.98 -0.09 7.12 16 12 O -0.52 -10.10 16.03 5.56 0.09 -10.01 16 13 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.20 -3.57 9.70 -39.53 -0.38 -3.96 16 16 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 17 C -0.23 -5.27 9.17 -39.40 -0.36 -5.64 16 18 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 19 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 20 C -0.39 -11.21 9.49 30.89 0.29 -10.91 16 21 H 0.09 2.44 5.21 -52.49 -0.27 2.16 16 22 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 24 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.52 5.40 -51.93 -0.28 0.24 16 32 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.08 0.40 7.02 -51.93 -0.36 0.04 16 36 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 39 H 0.40 2.27 8.47 -40.82 -0.35 1.92 16 40 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 42 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -37.19 390.99 -9.03 -46.22 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.12 Total: 4.85 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -4.19 Total: -20.16 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.33 Total: -37.45 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.19 -9.03 -46.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890834163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.762 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds