Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36545 * 120.26908 * 2 1 4 4 C 1.48316 * 120.73597 * 359.97438 * 3 2 1 5 5 O 1.21486 * 120.00301 * 255.78695 * 4 3 2 6 6 N 1.34783 * 119.99933 * 75.79763 * 4 3 2 7 7 C 1.46501 * 120.00230 * 184.94329 * 6 4 3 8 8 C 1.52994 * 109.47050 * 184.97721 * 7 6 4 9 9 C 1.50696 * 115.55065 * 304.38221 * 8 7 6 10 10 H 1.08000 * 120.00135 * 143.07413 * 9 8 7 11 11 C 1.37877 * 120.00027 * 323.06745 * 9 8 7 12 12 N 1.31516 * 120.00083 * 168.81804 * 11 9 8 13 13 Si 1.86797 * 119.99937 * 348.82664 * 11 9 8 14 14 H 1.48505 * 109.47326 * 95.56858 * 13 11 9 15 15 H 1.48501 * 109.47159 * 215.56860 * 13 11 9 16 16 H 1.48501 * 109.47311 * 335.56531 * 13 11 9 17 17 C 1.53009 * 117.49647 * 158.71206 * 8 7 6 18 18 C 1.53001 * 117.49807 * 90.05631 * 8 7 6 19 19 C 1.47082 * 118.52075 * 180.02562 * 3 2 1 20 20 C 1.39822 * 120.68011 * 180.02562 * 19 3 2 21 21 C 1.36589 * 119.82888 * 179.97438 * 20 19 3 22 22 C 1.38855 * 120.52585 * 0.02562 * 21 20 19 23 23 C 1.37748 * 120.63468 * 359.97253 * 22 21 20 24 24 C 1.39283 * 119.82779 * 0.02562 * 23 22 21 25 25 N 1.37839 * 120.43366 * 180.26400 * 24 23 22 26 26 C 1.46498 * 119.33502 * 0.03132 * 25 24 23 27 27 C 1.34444 * 121.33008 * 180.28000 * 25 24 23 28 28 O 1.21822 * 119.50740 * 179.72372 * 27 25 24 29 29 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47017 * 299.97569 * 1 2 3 31 31 H 1.08994 * 109.47909 * 59.97727 * 1 2 3 32 32 H 0.97003 * 119.99847 * 4.93842 * 6 4 3 33 33 H 1.09002 * 109.46768 * 304.97808 * 7 6 4 34 34 H 1.09000 * 109.47251 * 64.97225 * 7 6 4 35 35 H 0.97003 * 119.99890 * 185.00829 * 12 11 9 36 36 H 1.08999 * 117.49893 * 359.97438 * 17 8 7 37 37 H 1.08995 * 117.49727 * 145.01867 * 17 8 7 38 38 H 1.09003 * 117.49546 * 214.97919 * 18 8 7 39 39 H 1.08995 * 117.49893 * 359.97151 * 18 8 7 40 40 H 1.07994 * 120.08884 * 359.96027 * 20 19 3 41 41 H 1.07999 * 119.74036 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.68351 * 179.97438 * 22 21 20 43 43 H 1.07991 * 120.08379 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47523 * 180.25274 * 26 25 24 45 45 H 1.09008 * 109.46885 * 300.24969 * 26 25 24 46 46 H 1.09002 * 109.47576 * 60.24764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1793 0.0000 4 6 1.4763 2.4766 -0.0006 5 8 1.4082 3.1329 -1.0206 6 7 0.8987 2.9274 1.1307 7 6 0.0974 4.1536 1.1056 8 6 -0.3365 4.5084 2.5292 9 6 -1.0838 3.4291 3.2690 10 1 -0.9234 3.2898 4.3279 11 6 -1.9726 2.6194 2.5941 12 7 -2.4576 1.5453 3.1779 13 14 -2.4877 3.0478 0.8505 14 1 -1.6410 2.3002 -0.1137 15 1 -3.9116 2.6772 0.6497 16 1 -2.3200 4.5066 0.6290 17 6 -0.7346 5.9598 2.8053 18 6 0.5893 5.4130 3.3451 19 6 3.6654 1.1344 -0.0006 20 6 4.4152 2.3146 -0.0001 21 6 5.7797 2.2527 -0.0001 22 6 6.4300 1.0258 -0.0011 23 6 5.7115 -0.1495 -0.0016 24 6 4.3192 -0.1103 -0.0016 25 7 3.5879 -1.2786 0.0034 26 6 4.2896 -2.5646 0.0094 27 6 2.2435 -1.2619 -0.0021 28 8 1.6304 -2.3146 -0.0025 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5135 0.8903 31 1 -0.3635 0.5141 -0.8897 32 1 1.0136 2.4400 1.9615 33 1 0.6927 4.9683 0.6935 34 1 -0.7850 3.9983 0.4849 35 1 -3.0252 0.9368 2.6795 36 1 -0.6871 6.6618 1.9729 37 1 -1.5369 6.1338 3.5223 38 1 0.6575 5.2275 4.4171 39 1 1.5076 5.7549 2.8678 40 1 3.9168 3.2727 0.0001 41 1 6.3574 3.1651 0.0007 42 1 7.5094 0.9927 -0.0016 43 1 6.2264 -1.0987 -0.0020 44 1 3.5616 -3.3759 0.0082 45 1 4.9184 -2.6395 -0.8779 46 1 4.9111 -2.6354 0.9021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935781685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = 14.822354 kcal Electronic energy + Delta-G solvation = -30353.512159 eV Core-core repulsion = 26402.668471 eV Total energy + Delta-G solvation = -3950.843688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52547 -39.45065 -38.75597 -37.14197 -35.87403 -35.03073 -33.49943 -32.33392 -31.35768 -30.15675 -28.35721 -27.62394 -26.65969 -25.24979 -23.48118 -22.86340 -22.40188 -21.54670 -20.06887 -19.39834 -18.80860 -17.84075 -17.31049 -16.79001 -16.35777 -16.08045 -15.83730 -15.39187 -15.17710 -14.69066 -14.51166 -14.44340 -13.80787 -13.76730 -13.63512 -13.28708 -13.14437 -12.98010 -12.87125 -12.66338 -12.53004 -12.38697 -12.16756 -12.00147 -11.51895 -11.40011 -10.97039 -10.70602 -10.67632 -10.57823 -10.49325 -10.26515 -10.05199 -9.73757 -9.48715 -9.34712 -9.08583 -8.63072 -8.53337 -8.31320 -8.00816 -6.28182 -4.26193 0.31904 1.02957 1.57214 2.42396 2.79209 2.91872 3.19431 3.29754 3.33789 3.43458 3.73811 4.22068 4.24404 4.35558 4.49949 4.67339 4.71552 4.92615 4.94742 5.04186 5.06546 5.12355 5.24346 5.35249 5.45190 5.46659 5.53334 5.57435 5.71867 5.78988 5.85217 5.93239 6.04440 6.06081 6.11258 6.23460 6.28091 6.34039 6.37170 6.43009 6.48248 6.56142 6.57482 6.77110 6.92221 6.96893 7.06702 7.56789 7.79846 7.96406 8.33059 8.51348 8.75111 9.33172 10.81149 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004535 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.770284 B = 6173.089077 C = 7480.570944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C -0.048 4.048 4 C 0.557 3.443 5 O -0.540 6.540 6 N -0.687 5.687 7 C 0.138 3.862 8 C -0.008 4.008 9 C -0.492 4.492 10 H 0.081 0.919 11 C 0.086 3.914 12 N -0.881 5.881 13 Si 0.876 3.124 14 H -0.271 1.271 15 H -0.298 1.298 16 H -0.262 1.262 17 C -0.199 4.199 18 C -0.185 4.185 19 C -0.092 4.092 20 C -0.053 4.053 21 C -0.147 4.147 22 C -0.072 4.072 23 C -0.162 4.162 24 C 0.179 3.821 25 N -0.523 5.523 26 C 0.062 3.938 27 C 0.542 3.458 28 O -0.522 6.522 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.269 0.731 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.485 -3.046 -5.814 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.123 4.123 3 C -0.054 4.054 4 C 0.341 3.659 5 O -0.418 6.418 6 N -0.337 5.337 7 C 0.016 3.984 8 C -0.009 4.009 9 C -0.529 4.529 10 H 0.099 0.901 11 C -0.119 4.119 12 N -0.516 5.516 13 Si 0.707 3.293 14 H -0.197 1.197 15 H -0.225 1.225 16 H -0.188 1.188 17 C -0.238 4.238 18 C -0.222 4.222 19 C -0.095 4.095 20 C -0.071 4.071 21 C -0.165 4.165 22 C -0.091 4.091 23 C -0.182 4.182 24 C 0.079 3.921 25 N -0.240 5.240 26 C -0.080 4.080 27 C 0.337 3.663 28 O -0.400 6.400 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.252 0.748 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.806 -3.433 -6.497 18.342 hybrid contribution -0.264 0.024 -0.549 0.610 sum 16.542 -3.409 -7.046 18.301 Atomic orbital electron populations 1.20899 0.87772 1.04816 1.03913 1.22134 0.97887 0.90110 1.02120 1.21059 0.92293 0.93937 0.98074 1.18068 0.79123 0.84374 0.84363 1.90765 1.61292 1.57168 1.32602 1.45995 1.49529 1.27190 1.10997 1.21418 0.93807 0.85380 0.97778 1.19518 0.99321 0.90804 0.91302 1.20312 1.22380 1.13403 0.96799 0.90124 1.24935 0.94866 0.94363 0.97723 1.69866 1.33413 1.11177 1.37173 0.87166 0.77312 0.79570 0.85259 1.19695 1.22547 1.18841 1.23118 0.98275 0.99498 1.02868 1.22823 0.92859 1.06819 0.99721 1.18248 0.90826 0.92249 1.08215 1.20941 0.94110 0.97044 0.95023 1.20808 0.94199 0.98208 1.03331 1.21084 1.00021 0.91646 0.96303 1.20759 0.90569 0.99727 1.07190 1.17819 0.91580 0.84644 0.98057 1.45020 1.06669 1.06757 1.65584 1.22059 0.98467 0.84715 1.02722 1.18053 0.80764 0.90208 0.77301 1.90857 1.66400 1.32819 1.49892 0.89693 0.88757 0.90578 0.74759 0.92111 0.92031 0.92126 0.91179 0.89294 0.89720 0.90836 0.84848 0.85248 0.85162 0.84814 0.87974 0.90712 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.83 36.01 0.32 -1.87 16 2 C -0.12 -2.10 6.08 -102.08 -0.62 -2.72 16 3 C -0.05 -0.83 5.80 -102.78 -0.60 -1.43 16 4 C 0.56 10.72 5.16 -12.11 -0.06 10.66 16 5 O -0.54 -11.68 17.08 5.38 0.09 -11.58 16 6 N -0.69 -13.44 5.08 -61.10 -0.31 -13.75 16 7 C 0.14 2.88 4.36 -4.04 -0.02 2.86 16 8 C -0.01 -0.18 1.41 -155.66 -0.22 -0.39 16 9 C -0.49 -12.41 8.86 -34.44 -0.31 -12.71 16 10 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 11 C 0.09 2.25 5.42 -17.82 -0.10 2.15 16 12 N -0.88 -24.54 13.95 55.43 0.77 -23.77 16 13 Si 0.88 20.93 24.03 -169.99 -4.09 16.85 16 14 H -0.27 -6.32 6.56 56.52 0.37 -5.95 16 15 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.26 -6.14 6.38 56.52 0.36 -5.77 16 17 C -0.20 -3.90 9.96 -26.69 -0.27 -4.16 16 18 C -0.18 -3.44 9.93 -26.69 -0.27 -3.70 16 19 C -0.09 -1.35 5.89 -104.83 -0.62 -1.97 16 20 C -0.05 -0.68 9.44 -39.58 -0.37 -1.05 16 21 C -0.15 -1.44 9.97 -39.95 -0.40 -1.84 16 22 C -0.07 -0.61 10.02 -39.53 -0.40 -1.00 16 23 C -0.16 -1.53 9.26 -39.37 -0.36 -1.90 16 24 C 0.18 2.30 6.53 -83.89 -0.55 1.75 16 25 N -0.52 -7.03 3.03 -122.52 -0.37 -7.40 16 26 C 0.06 0.58 9.20 59.85 0.55 1.13 16 27 C 0.54 9.09 7.58 -13.25 -0.10 8.99 16 28 O -0.52 -9.72 15.26 5.08 0.08 -9.64 16 29 H 0.08 1.52 7.20 -51.93 -0.37 1.15 16 30 H 0.09 1.92 8.08 -51.92 -0.42 1.51 16 31 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 32 H 0.42 8.06 7.97 -40.82 -0.33 7.74 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.77 16 34 H 0.06 1.41 2.57 -51.93 -0.13 1.27 16 35 H 0.27 7.14 8.32 -40.82 -0.34 6.81 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.13 1.79 7.23 -52.49 -0.38 1.41 16 41 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.13 0.89 6.67 -52.49 -0.35 0.54 16 44 H 0.10 1.06 6.80 -51.93 -0.35 0.71 16 45 H 0.07 0.52 7.89 -51.92 -0.41 0.12 16 46 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -30.87 375.51 -8.69 -39.57 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.15 Total: 11.28 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.38 Total: -7.21 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.09 Total: -44.92 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.17 Total: -21.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.09 Total: 16.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.87 -8.69 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.388 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds